| Literature DB >> 35741726 |
Harbans S Bariana1, Prashanth Babu1,2, Kerrie L Forrest3, Robert F Park1, Urmil K Bansal1.
Abstract
Breeding for leaf rust resistance has been successful worldwide and is underpinned by the discovery and characterisation of genetically diverse sources of resistance. An English scientist, Arthur Watkins, collected pre-Green Revolution wheat genotypes from 33 locations worldwide in the early part of the 20th Century and this collection is now referred to as the 'Watkins Collection'. A common wheat genotype, Aus27352 from Yugoslavia, showed resistance to currently predominating Australian pathotypes of the wheat leaf rust pathogen. We crossed Aus27352 with a leaf rust susceptible wheat selection Avocet S and a recombinant inbred line (RIL) F6 population of 200 lines was generated. Initial screening at F3 generation showed monogenic segregation for seedling response to leaf rust in Aus27352. These results were confirmed by screening the Aus27352/Avocet S RIL population. The underlying locus was temporarily named LrAW2. Bulked segregant analysis using the 90K Infinium SNP array located LrAW2 in the long arm of chromosome 2B. Tests with molecular markers linked to two leaf rust resistance genes, Lr50 and Lr58, previously located in chromosome 2B, indicated the uniqueness of LrAW2 and it was formally designated Lr82. Kompetitive allele-specific polymerase chain reaction assays were developed for Lr82-linked SNPs. KASP_22131 mapped 0.8 cM proximal to Lr82 and KASP_11333 was placed 1.2 cM distal to this locus. KASP_22131 showed 91% polymorphism among a set of 89 Australian wheat cultivars. We recommend the use of KASP_22131 for marker assisted pyramiding of Lr82 in breeding programs following polymorphism check on parents.Entities:
Keywords: gene mapping; leaf rust; marker development; triple rust resistance; wheat
Mesh:
Substances:
Year: 2022 PMID: 35741726 PMCID: PMC9222540 DOI: 10.3390/genes13060964
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Responses of parental lines to six pathotypes of P. triticina.
| Pathotype ^ | Culture Number * | Aus27352 | Avocet S |
|---|---|---|---|
| 104-2,3,6,(7) | 231 | 3+ | 23- |
| 10-1,2,3,4 | 348 | 3+ | 23- |
| 104-1,(2),3,(6),(7),11,13 | 547 | 3+ | 23- |
| 10-1,3,9,10,11,12 | 592 | 3+ | ; |
| 104-1,3,4,6,7,8,10,12+Lr37 | 634 | ;11+c | 3+ |
| 76-3,5,7,9,10,12,13+Lr37 | 625 | 11- | 3+ |
^ 1= Lr20, 2 = Lr23, 3 = Lr14a, 4 = Lr15, 5 = Lr3Ka, 6 = Lr27+Lr31, 7 = Lr17a, 8 = Lr28, 9 = Lr26, 10 = Lr13, 11 = Lr16, 12 = Lr17b, 13 = Lr24; Lr37+ denotes virulence for Lr37; the Pt group 104 is virulent on Lr1 and Lr3a; culture 592 is avirulent on Lr73 and virulent on Lr1. Pt group 76 is virulent on Lr3a and Lr13, and avirulent on Lr1. * These numbers represent the unique identity of a purified and confirmed pathotype.
Distribution of Aus27352/AvS RIL population when tested with pathotype 104-1,3,4,6,7,8,10,12+Lr37.
| Leaf Rust Response | Infection Type | No. of Lines | χ2 (1:1) | |
|---|---|---|---|---|
| Observed | Expected | |||
| Homozygous resistant | ;11+ | 88 | 100 | 1.44 |
| Homozygous susceptible | 3+ | 112 | 100 | 1.44 |
| Total | 200 | 200 | 2.88 | |
Table value of χ2 (1:1) at p = 0.05 is 3.84 and 1 d.f.
KASP markers used to generate a genetic linkage map of Aus27352/AvS RIL population.
| Marker | Physical Distance (bp) | Allele 1 a | Allele 2 b | Common |
|---|---|---|---|---|
|
| 785,138,741 | gagccactgatctgatcactt | gagccactgatctgatcactc | tcgtcggtgtttccctgttt |
|
| 784,551,365 | ctgaagcacttcgcccca | ctgaagcacttcgccccg | gaatctacgacgaggctgc |
|
| 785,890,263 | ttgtgtatgtatgttcatttggca | ttgtgtatgtatgttcatttggcg | tctttgtaggttgaaagggct |
|
| 786,230,653 | tgacccatactttgcaacacaa | tgacccatactttgcaacacag | acacgtgatggaaaaggttct |
|
| 786,105,954 | gacatggcggggtcgact | gacatggcggggtcgacc | gaactgacgtgagccatgct |
|
| 786,229,479 | ttacaacgataaggccaccaa | ttacaacgataaggccaccag | cagtgaacttcttcaggcgg |
|
| 789,608,961 | cggatttctggacatcgtca | cggatttctggacatcgtcg | tcaaactttccttgttgttcgtac |
|
| 788,524,814 | tccaccatcccgcagcaa | tccaccatcccgcagcag | aggccttggggacacaatcc |
|
| 788,524,885 | ccccaaggcctctttcgt | ccccaaggcctctttcgg | gccagtttgatgtcgaagagat |
|
| 788,657,195 | tggtagtgctgcaaaacga | tggtagtgctgcaaaacgg | ggtgttggttactacagcagc |
|
| 788,655,517 | gtccaaggccgaggaggat | gtccaaggccgaggaggac | cctgctcagccaacaccattatg |
|
| 788,656,700 | ggctagtgttgtttttgtacca | ggctagtgttgtttttgtaccg | catacaggtagcagatacgcaa |
|
| 790,751,851 | cacggaaccagactggca | cacggaaccagactggcg | gaacccgttctcagcgaat |
|
| 793,148,680 | cagatgatggtggatggtatgtatt | cagatgatggtggatggtatgtatc | atggttgtgggaagcacgaa |
a A1 primer labelled with FAM: GAAGGTGACCAAGTTCATGCT; b A2 primer labelled with HEX: GAAGGTCGGAGTCAACGGATT.
Figure 1Genetic linkage map of Aus27352/AvS RIL population showing the location of LrAW2.
Genotyping of markers flanking Lr82 for polymorphism on Australian wheat cultivars.
| Cultivars * |
|
|
|---|---|---|
| Aus27352 |
|
|
| Avocet S |
|
|
| AGT Katana, Axe, Baxter, Bolac, Carnamah, Catalina, Chara, Cobra, Corack, Crusader, Dart, Derrimut, EGA Bonnie Rock, EGA Burke, EGA Gregory, EGA Wedgetail, EGA Wylie, Elmore CL PLus, Emu Rock, Envoy, Estoc, Forrest, Gauntlet, Gazelle, GBA Sapphire, Giles, Grenade CL Plus, Harper, Impala, Janz, Justica CL Plus, King Rock, Kord CL Plus, Kunjin, Lancer, Lang, Lincoln, Livingston, LRPB Reliant, Mace, Magenta, Mansfield, Merinda, Preston, SF Adagio, SF Scenario, Shield, Sunco, Sunguard, SunMax, Sunvale, Sunzell, Wallup, Westonia, Wyalkatchem, Wylah, Yandanooka, Yitpi, Young |
|
|
| Beaufort, Calingiri, Coolah, DS Faraday, EGA Bounty, Fortune, LRPB Flanker, Mackellar, Merlin, Naparoo, Ninja, Phantom, Scout, Sentinel, Spitfire, SQP Revenue, Strzelecki, Suntop, Trojan, Ventura, Waagan |
|
|
| Correll, Espada, LRPB Kittyhawk, Orion |
|
|
| Chief CL Plus, Gladius, Impose CL Plus, LRPB Arrow, Wedin |
|
|
* Leaf rust responses of these cultivars can be viewed at https://www.sydney.edu.au/content/dam/corporate/documents/faculty-of-science/research/life-and-environmental-sciences/cereal-rust-research/cereal-rust-report--2020-vol-17-3.pdf (accessed on 20 May 2022).
Figure 2Physical location of annotated genes in the interval containing Lr82. Positions (Mbp) shown refer to the International Wheat Genome Sequencing Consortium (IWGSC) Chinese Spring wheat genome assembly v1.0. Orange marks are high confidence (HC) gene annotations and pink marks are low confidence (LC) gene annotations. The location of flanking KASP markers and two genes predicted to encode TIR-NBS-LRR disease resistance proteins are indicated with triangles.