| Literature DB >> 35733554 |
Eman Masoud Abd El Gayed1, Heba Maged Abo Shady2, Mohammed Elhelbawy3, Eman S El Deen Arafat1.
Abstract
Background: Maternal and perinatal mortality is caused by a variety of factors, including preeclampsia. PE's onset and progression may be influenced by lncRNAs. The effect of long non-coding RNA (lncRNA) Colon cancer-associated transcription factor 1 (CCAT1) expression in the placenta of preeclampsia patients on preeclampsia progression was the focus of this investigation.Entities:
Keywords: Colon cancer-associated transcription factor 1 (CCAT1); Cyclin-dependent protein kinase 4 (CDK4); Preeclampsia; Real time PCR
Year: 2022 PMID: 35733554 PMCID: PMC9207606 DOI: 10.1016/j.bbrep.2022.101294
Source DB: PubMed Journal: Biochem Biophys Rep ISSN: 2405-5808
Figure (1)Amplification plot of CCAT1 gene expression (normalised fluorescence signal (ΔRn) plotted versus cycle number).
Demographic, clinical and laboratory data in the studied groups.
| PE Cases (n = 80) | Control (n = 80) | Test of Sig. | p | |
|---|---|---|---|---|
| Mean ± SD. | 27.3 ± 4.8 | 26 ± 4.5 | t = 1.745 | 0.083 |
| Mean ± SD | 36.1 ± 3.2 | 34.5 ± 4.2 | t = 2.858* | 0.005* |
| 6 (7.5%) | 0 (0%) | χ2 = 6.234* | FEp = 0.028* | |
| Mean ± SD | 3 ± 0.4 | 3.2 ± 0.3 | t = 4.786* | <0.001* |
| Mean ± SD. | 148.4 ± 16 | 114.6 ± 6.9 | t = 17.291* | <0.001* |
| Mean ± SD. | 97.8 ± 13.5 | 73.4 ± 6.4 | t = 14.613* | <0.001* |
| 80 (100%) | 0 (0%) | χ2 = 160.0 | <0.001* | |
| +1 | 38 (47.5%) | – | – | – |
| +2 | 27 (33.8%) | – | ||
| +3 | 6 (7.5%) | – | ||
| +4 | 9 (11.3%) | – | ||
| Mean ± SD. | 26.2 ± 4.6 | 22.4 ± 2.4 | U= | <0.001* |
| Mean ± SD. | 1.4 ± 0.2 | 0.8 ± 0.1 | U= | <0.001* |
| Mean ± SD. | 5.6 ± 0.9 | 4.3 ± 0.7 | t = 10.006* | <0.001* |
| Mean ± SD. | 34.4 ± 32.6 | 23.5 ± 4.7 | U = 1660.0* | <0.001* |
| Mean ± SD. | 23.6 ± 22.3 | 17.3 ± 5.5 | U = 2697.0 | 0.085 |
| Mean ± SD. | 11.1 ± 1 | 11.6 ± 1.2 | t = 2.422* | 0.017* |
| Mean ± SD. | 206 ± 76.7 | 216.8 ± 50.4 | t = 2955.50 | 0.400 |
SD: Standard deviation.
t: Student t-test.
U: Mann Whitney test.
χ2: Chi square test.
FE: Fisher Exact.
p: p value for comparing between the studied groups.
*: Statistically significant at p ≤ 0.05.
Comparison between the two studied groups according to CCAT1 expression and CD4.
| CCAT1 expression | PE Cases (n = 80) | Control (n = 80) | Test of Sig. | p |
|---|---|---|---|---|
| Mean ± SD. | 7.4 ± 1.9 | 3.3 ± 0.8 | U = 182.50* | <0.001* |
| Median (Min. – Max.) | 7.9(4–9.8) | 3(1–5) | ||
| Mean ± SD. | 0.8 ± 0.4 | 1.7 ± 0.2 | t = 20.175* | <0.001* |
| Median (Min. – Max.) | 0.7(0.4–1.6) | 1.7(1.5–2.5) | ||
SD: Standard deviation.
t: Student t-test.
U: Mann Whitney test.
p: p value for comparing between the studied groups.
*: Statistically significant at p ≤ 0.05.
correlation between long non coding RNA level and demographic, clinical and laboratory data in patients' group.
| CCAT1 expression | CDK4 | |||
|---|---|---|---|---|
| rs | P | r | p | |
| 0.162 | 0.151 | −0.050 | 0.660 | |
| 0.141 | 0.211 | 0.072 | 0.526 | |
| −0.060 | 0.598 | 0.084 | 0.458 | |
| 0.364 | 0.001* | −0.255 | 0.023* | |
| 0.349 | 0.002* | −0.225 | 0.045* | |
| 0.066 | 0.563 | −0.087 | 0.442 | |
| 0.227 | 0.043* | −0.240 | 0.032* | |
| 0.237 | 0.034* | −0.221 | 0.049* | |
| 0.122 | 0.280 | −0.193 | 0.086 | |
| −0.044 | 0.696 | 0.086 | 0.449 | |
| 0.047 | 0.679 | 0.058 | 0.611 | |
| −0.030 | 0.791 | 0.066 | 0.558 | |
| −0.025 | 0.828 | −0.070 | 0.540 | |
rs: Spearman coefficient.
r: Pearson coefficient.
*: Statistically significant at p ≤ 0.05.
Figure (2)Correlation between CCAT1 expression and CDK4 in PE Cases (n = 80).
Figure (3)ROC curve for CCAT1 expression and CDK4 to discriminate PE patients (n = 80) from control (n = 80).
validity (AUC, sensitivity, specificity) for CCAT1 expression and CDK4 to discriminate PE patients (n = 80) from control (n = 80).
| AUC | p | 95% C.I | Cut off | Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|---|---|---|---|
| 0.971 | <0.001* | 0.951–0.992 | >4 | 93.75 | 87.50 | 88.24 | 93.33 | |
| 0.969 | <0.001* | 0.944–0.993 | ≤1.5 | 91.25 | 86.25 | 86.90 | 90.79 |
AUC: Area Under a Curve p value: Probability value.
CI: Confidence Intervals.
NPV: Negative predictive value.
PPV: Positive predictive value.
*: Statistically significant at p ≤ 0.05.
logistic regression analysis of demographic, clinical and laboratory data affecting preeclampsia.
| Univariate | ||
|---|---|---|
| P | OR (95%C.I) | |
| 0.084 | 1.062(0.992–1.136) | |
| 1.130(1.036–1.233) | ||
| 0.134(0.053–0.341) | ||
| 6.371(0.0–2.116) | ||
| 1.684(1.362–2.083) | ||
| 1.538(1.329–1.780) | ||
| 8.721(3.590–21.183) | ||
| 7.801(4.041–15.062) | ||
| 1.166(1.091–1.247) | ||
| 1.056(1.011–1.103) | ||
| 0.708(0.531–0.943) | ||
| 0.997(0.993–1.002) | ||
| 8.932(4.011–19.889) | ||
| 0.0(0.0–0.001) | ||
OR: Odd's ratio.
C.I: Confidence interval LL: Lower limit UL: Upper Limit.
#: All variables with p < 0.05 was included in the multivariate.
*: Statistically significant at p ≤ 0.05.
Univariate and multivariate logistic regression analysis for the parameters affecting PE patients.
| Univariate | #Multivariate | |||
|---|---|---|---|---|
| P | OR (95%C.I) | p | OR (95%C.I) | |
| 8.932(4.011–19.889) | 0.002* | 9.862(2.314–42.019) | ||
| 0.0(0.0–0.001) | 0.012* | 0.0(0.0–0.045) | ||
| 8.932(4.011–19.889) | 0.036* | 42.512(1.28–1414.32) | ||
| 1.684(1.362–2.083) | 0.056 | 1.966(0.98–3.93) | ||
| 1.130(1.036–1.233) | 0.174 | 1.350(0.87–2.08) | ||
| 0.0(0.0–0.001) | 0.021* | 1.770(1.09–2.87) | ||
| 1.684(1.362–2.083) | 0.086 | 1.879(0.91–3.87) | ||
| 1.130(1.036–1.233) | 0.054 | 0.0(0.0–1.42) | ||
OR: Odd's ratio.
C.I: Confidence interval.
LL: Lower limit.
UL: Upper Limit.
#: All variables with p < 0.05 was included in the multivariate.
*: Statistically significant at p ≤ 0.05.