Literature DB >> 35733010

In Vitro Histone Demethylase Assays.

Shengjiang Tu1.   

Abstract

Dynamic histone methylation regulates gene activation and repression. It is involved in proliferation, differentiation, lineage specification, and development. Histone demethylase assays are invaluable in studying histone demethylation substrate recognition, kinetics, regulation, and inhibition by small molecules, many of which are potential therapeutics. Here we describe general procedures to purify recombinant enzymes from different expression hosts, and to prepare a broad range of substrates, as well as to set up a variety of in vitro histone demethylase assays. These assays provide useful tools for discoveries from enzymes to drugs.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Chromatin; Demethylase assays; Gene transcription; Histone demethylases; Histone methylation; Histone modifications; Histones; Nucleosome

Mesh:

Substances:

Year:  2022        PMID: 35733010     DOI: 10.1007/978-1-0716-2481-4_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

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Authors:  Yu-ichi Tsukada; Jia Fang; Hediye Erdjument-Bromage; Maria E Warren; Christoph H Borchers; Paul Tempst; Yi Zhang
Journal:  Nature       Date:  2005-12-18       Impact factor: 49.962

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Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

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Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

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Journal:  Cell       Date:  1996-03-22       Impact factor: 41.582

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Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

6.  Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.

Authors:  Yujiang Shi; Fei Lan; Caitlin Matson; Peter Mulligan; Johnathan R Whetstine; Philip A Cole; Robert A Casero; Yang Shi
Journal:  Cell       Date:  2004-12-29       Impact factor: 41.582

7.  Identification of histone demethylases in Saccharomyces cerevisiae.

Authors:  Shengjiang Tu; Esther M M Bulloch; Lanhao Yang; Chen Ren; Wei-Chieh Huang; Pang-Hung Hsu; Chein-Hung Chen; Chung-Lin Liao; Hui-Ming Yu; Wan-Sheng Lo; Michael A Freitas; Ming-Daw Tsai
Journal:  J Biol Chem       Date:  2007-03-16       Impact factor: 5.157

8.  A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p.

Authors:  J Taunton; C A Hassig; S L Schreiber
Journal:  Science       Date:  1996-04-19       Impact factor: 47.728

9.  The site-specific installation of methyl-lysine analogs into recombinant histones.

Authors:  Matthew D Simon; Feixia Chu; Lisa R Racki; Cecile C de la Cruz; Alma L Burlingame; Barbara Panning; Geeta J Narlikar; Kevan M Shokat
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

Review 10.  Histone demethylases in chromatin biology and beyond.

Authors:  Emilia Dimitrova; Anne H Turberfield; Robert J Klose
Journal:  EMBO Rep       Date:  2015-11-12       Impact factor: 8.807

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