| Literature DB >> 35728900 |
Martin Risch1,2,3, Kirsten Grossmann1,4, Diederick E Grobbee5,6, Maureen Cronin7, David Conen8, Brianna M Goodale7, Lorenz Risch9,3,10, Stefanie Aeschbacher11, Ornella C Weideli1, Marc Kovac3, Fiona Pereira12, Nadia Wohlwend3, Corina Risch3, Dorothea Hillmann3, Thomas Lung3, Harald Renz13, Raphael Twerenbold11,14, Martina Rothenbühler7, Daniel Leibovitz7, Vladimir Kovacevic7, Andjela Markovic7,15,16, Paul Klaver17, Timo B Brakenhoff17, Billy Franks17, Marianna Mitratza5,6, George S Downward5,6, Ariel Dowling18, Santiago Montes19.
Abstract
OBJECTIVES: We investigated machinelearningbased identification of presymptomatic COVID-19 and detection of infection-related changes in physiology using a wearable device.Entities:
Keywords: COVID-19; Health & safety; Health informatics; Infection control; Public health; VIROLOGY
Mesh:
Year: 2022 PMID: 35728900 PMCID: PMC9240454 DOI: 10.1136/bmjopen-2021-058274
Source DB: PubMed Journal: BMJ Open ISSN: 2044-6055 Impact factor: 3.006
Figure 1COVI-GAPP participants (n=1163) wore a certified medical device at night while they slept, syncing it to a complementary smartphone application on waking. The device and app were originally designed for fertility tracking in naturally menstruating women but adapted for the purposes of this study. Instead of real-time fertility indications, participants saw ‘Fertility Unknown’ on syncing (A). Additionally, the in-app daily diary asked participants about potential confounds (B) and COVID-19 symptoms (C) rather than fertility-related questions.
Figure 2Recurrent neural network (RNN) architecture for the detection of a presymptomatic case of COVID-19. The RNN consisted of two hidden layers and one output layer. The first hidden layer contained 16 and second layer contained 64 long short-term memory (LSTM) units. The LSTM output activation was a sigmoid function, while the recurrent activation on hidden layers was the rectified linear unit function. The input of RNN was eight consecutive values of physiological signal originating from eight consecutive nights of data. The output was an indication about the potential COVID-19 infection.
Figure 3Class depiction based on the recurrent neural network (RNN). Here, class 0 represents healthy days and class 1 represents the presymptomatic phase of COVID-19 (SO-10 to SO-2). Vectors of marked classes represent training input for the RNN. SO, symptom onset.
Figure 4Study flow chart. From 2170 GAPP participants, 1163 participants were enrolled in the COVI-GAPP study. A total of 127 participants presented laboratory-confirmed COVID-19 disease and from these, a total of 66 positive tested participants had complete bracelet data available used for the algorithm development.
Overall participant characteristics stratified according to whether they contracted COVID-19
| Variables | Total n=1163 | COVID-19 n=127 | No COVID-19 | Test statistic | Significance |
| Sex ratio (F:M) | 667:494 | 74:53 | 594:441 |
| 0.982 |
| Mean age, years (SD) | 44.08 (5.57) | 43.66 (5.64) | 44.14 (5.56) | F(1, 1071)=0.59 | 0.444 |
| BMI, kg/m2 (SD) | 24.72 (3.97) | 24.74 (4.00) | 24.72 (3.97) | F(1, 1071)=0.02 | 0.90 |
| Smoking status, N (never: current: past smoker) | 654:110:102 | 93:10:12 | 561:100:90 |
| 0.304 |
| N of household contacts with COVID-19 | 111 | 53 | 58 |
| <0.0001* |
| N of work colleagues with COVID-19 | 279 | 49 | 230 |
| <0.0001* |
*Indicates p≤0.002, significant difference with Bonferroni correction.
BMI, body mass index.
Clinical characteristics of participants who contracted COVID-19 stratified according to whether they did (compliant group) or did not (non-compliant group) wear the bracelet regularly
| Variables (n) | Compliant group (n=66) | Non-compliant group (n=61) | Test statistic | Significance |
| Sex ratio (F:M) | 45:21 | 29:32 |
| 0.030 |
| Mean age, years (SD) | 42.88 (5.59) | 44.54 (5.60) | F(1, 116)=2.85 | 0.094 |
| BMI, kg/m² (SD) | 23.75 (3.69) | 25.81 (4.06) | F(1, 116)=10.39 | 0.002* |
| Hospitalisation rate | 3 | 7 |
| 0.425 |
| Smoking status, N | 57:4:5 | 36:6:7 |
| 0.22 |
| N of household contacts with COVID-19 | 35 | 18 |
| 0.123 |
| N of work colleagues with COVID-19 | 28 | 21 |
| 1 |
| COVID-19 symptoms: | ||||
| Fever | 17 | 23 |
| 0.344 |
| Chills | 14 | 11 |
| 0.432 |
| Cough | 26 | 30 |
| 0.616 |
| Runny nose | 26 | 25 |
| 0.938 |
| Difficulty breathing | 11 | 10 |
| 0.530 |
| Loss of the sense of smell | 26 | 24 |
| 0.543 |
| Loss of the sense of taste | 20 | 22 |
| 0.896 |
| Chest pressure | 7 | 10 |
| 0.636 |
| Sore throat | 18 | 19 |
| 1 |
| Muscle pain | 27 | 32 |
| 0.593 |
| Headache | 44 | 29 |
| 0.005 |
| Fatigue | 27 | 38 |
| 0.135 |
| Malaise | 19 | 25 |
| 0.670 |
| Diarrhoea | 13 | 13 |
| 0.896 |
| Sickness | 9 | 5 |
| 0.256 |
| Vomiting | 1 | 5 |
| 0.169 |
| Hospitalisation | 3 | 7 |
| 0.425 |
| Long-term effects of COVID-19 (≥10 day) | 5 | 15 |
| 0.017 |
| Mean symptom duration | 8.54 (5.10) | 10.16 (10.98) | F(1, 116)=1.31 | 0.254 |
*Indicates p≤0.002, significant difference with Bonferroni correction.
BMI, body mass index.
Multi-level linear mixed models reveal the relationship between COVID-19 phases and physiological parameters
| Predictors | Respiratory rate | Heart rate | Heart rate variability (SDNN) | Heart rate variability (RMSSD) | Heart rate variability ratio | Wrist skin temperature | Skin perfusion |
| Intercept | 15.10† (0.26) | 55.43† (0.83) | 59.64† (1.43) | 43.71† (1.16) | 0.50† (0.02) | 35.32† (0.06) | −0.01† (0.00) |
| COVID-19 phase | |||||||
| Baseline | Reference group | Reference group | Reference group | Reference group | Reference group | Reference group | Reference group |
| Incubation | 0.02 (0.06) | 0.87† (0.29) | −1.48* (0.59) | −0.37 (0.48) | −0.01* (0.01) | 0.13† (0.04) | 0.00 (0.00) |
| Presymptomatic | 0.14 (0.12) | 1.00† (0.36) | −1.70* (0.64) | −0.75 (0.53) | −0.02* (0.01) | 0.18† (0.05) | 0.00 (0.00) |
| Symptomatic | 1.00† (0.18) | 2.15† (0.48) | −1.45* (0.73) | 0.12 (0.51) | 0.00 (0.01) | 0.30† (0.05) | 0.00 (0.00) |
| Recovery | 0.10 (0.06) | 0.87† (0.22) | −0.92 (0.51) | 0.04 (0.44) | 0.00 (0.01) | 0.20† (0.03) | 0.00 (0.00) |
Unstandardised β -coefficient values reported, with SEs in brackets.
*P<0.05.
†0.007, respectively, with Bonferroni correction.
RMSSD, root mean square of successive differences; SDNN, SD of the normal-to-normal interval.
Figure 5The wearable device can detect changes in five physiological parameters across the clinical course of COVID-19. The values of each physiological parameter (with 95% CIs) collapsed across individuals (n=66) were normalised using baseline measurements and are shown centred around participant-reported symptom onset (SO). SDNN, SD of the normal-to-normal interval.
Performance metrics of the algorithm in the detection of COVID-19 2 days prior to symptom onset class 1 represented an 8-day long training instance extracted from day 10 to day 2 before SO
| Sample | Class | Precision | Recall | F-score |
| Training set | 0 | 0.60 | 0.45 | 0.51 |
| 1 | 0.60 | 0.73 | 0.66 | |
| Test set | 0 | 0.50 | 0.36 | 0.42 |
| 1 | 0.54 | 0.68 | 0.60 |
Class 0 represented a training instance extracted from all other 8 days long consecutive measurements (eg, SO-11 to SO-3). The training set consisted of 40 days measurements from 66 participants with 70:30 train-test split. Sensitivity is reflected in the recall of class 1, while specificity is determined by the recall of class 0.
SO, symptom onset.