Literature DB >> 35728469

Mechanism of trypsin activation by pulsed electric field treatment revealed based on chemical experiments and molecular dynamics simulations.

Yinli Li1, Zihan Yuan1, Yuanhong Gao1, Zhijie Bao1, Na Sun1, Songyi Lin2.   

Abstract

A pulsed electric field (PEF) treatment exhibits different effects on trypsin; however, the mechanism of enzyme activation remains unclear. Herein, chemical experiments combined with molecular dynamics simulations revealed the mechanism of trypsin activation by PEF treatment at the molecular level. The results indicated that compared with the values at 0 kV/cm, the enzyme activity, Vmax, and Kcat at 20 kV/cm increased by 9.30%, 4.74%, and 4.30%, respectively, and Km decreased by 11.14%, indicating an improved interaction between the enzyme and substrate. The simulation results revealed that PEF treatment increased the number of molecular hydrogen bonds and the solvent-accessible surface area, while decreasing the rotation radius and random coil content by 5.00% and 3.37%, respectively. Molecular docking indicated that PEF treatment altered the active center and increased the affinity between the enzyme and substrate. The simulation results were consistent with those of the spectroscopic experiments conducted on trypsin after PEF treatment.
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Activation; Conformational changes; Molecular docking; Molecular dynamics simulation; Pulsed electric field; Trypsin

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Year:  2022        PMID: 35728469     DOI: 10.1016/j.foodchem.2022.133477

Source DB:  PubMed          Journal:  Food Chem        ISSN: 0308-8146            Impact factor:   9.231


  1 in total

1.  C-Terminal Modification on the Immunomodulatory Activity, Antioxidant Activity, and Structure-Activity Relationship of Pulsed Electric Field (PEF)-Treated Pine Nut Peptide.

Authors:  Shuyu Zhang; Liu Dong; Zhijie Bao; Songyi Lin
Journal:  Foods       Date:  2022-08-31
  1 in total

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