Literature DB >> 35728307

Molecular simulations of complex carbohydrates and glycoconjugates.

Elisa Fadda1.   

Abstract

Complex carbohydrates (glycans) are the most abundant and versatile biopolymers in nature. The broad diversity of biochemical functions that carbohydrates cover is a direct consequence of the variety of 3D architectures they can adopt, displaying branched or linear arrangements, widely ranging in sizes, and with the highest diversity of building blocks of any other natural biopolymer. Despite this unparalleled complexity, a common denominator can be found in the glycans' inherent flexibility, which hinders experimental characterization, but that can be addressed by high-performance computing (HPC)-based molecular simulations. In this short review, I present and discuss the state-of-the-art of molecular simulations of complex carbohydrates and glycoconjugates, highlighting methodological strengths and weaknesses, important insights through emblematic case studies, and suggesting perspectives for future developments.
Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights reserved.

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Year:  2022        PMID: 35728307     DOI: 10.1016/j.cbpa.2022.102175

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  1 in total

1.  Extension of the CHARMM Classical Drude Polarizable Force Field to N- and O-Linked Glycopeptides and Glycoproteins.

Authors:  Abhishek A Kognole; Asaminew H Aytenfisu; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2022-08-25       Impact factor: 3.466

  1 in total

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