Literature DB >> 35727440

Designing Overlap Extension PCR Primers for Protein Mutagenesis: A Programmatic Approach.

Xiaofang Huang1,2, Liangting Xu1,2, Chuyun Bi1,2, Lili Zhao1,2, Limei Zhang1,2, Xuanyang Chen1,2, Shiqian Qi3, Shiqiang Lin4,5.   

Abstract

Overlap extension PCR is one of the routinely used methods to generate mutagenic genes for the functional and structural study of proteins. However, it is time-consuming to design the overlapping mutagenic primers and gene primers by manual operation. In this chapter, we present a Python script that is able to search all the possible primer combinations according to the preset definitions and calculate the necessary parameters of each primer for the users, which could facilitate the primer design process. Up to 256 pairs of primers can be provided for selection using this script.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Overlap extension PCR; Overlapping mutagenic primers; Primer design; Site-directed mutagenesis

Mesh:

Substances:

Year:  2022        PMID: 35727440     DOI: 10.1007/978-1-0716-2152-3_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  1 in total

1.  A simple and ultra-low cost homemade seamless ligation cloning extract (SLiCE) as an alternative to a commercially available seamless DNA cloning kit.

Authors:  Yuki Okegawa; Ken Motohashi
Journal:  Biochem Biophys Rep       Date:  2015-09-11
  1 in total

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