Literature DB >> 35726370

Increased expression of tribbles homolog 3 predicts poor prognosis and correlates with tumor immunity in clear cell renal cell carcinoma: a bioinformatics study.

Xin-Qiang Wu1,2, Xi Tian1,2, Fu-Jiang Xu1, Yue Wang1,2, Wen-Hao Xu1,2, Jia-Qi Su1,2, Yuan-Yuan Qu1,2, Jian-Yuan Zhao3, Hai-Liang Zhang1,2, Ding-Wei Ye1,2.   

Abstract

Tribbles homolog 3 (TRIB3), a pseudokinase that regulates multiple intracellular signaling pathways, has been reported to promote the growth of multiple tumors. However, its role in clear cell renal cell carcinoma (ccRCC) remains unelucidated. We evaluated the role of TRIB3 in ccRCC using publicly available data from The Cancer Genome Atlas and analyzed its relationship with the tumor microenvironment; moreover, we used gene knockout and overexpression techniques to detect the effects of TRIB3 on the biological behavior of ccRCC cells. RT-qPCR and western blotting were used to detect transfection efficiency, and the invasiveness of ccRCC cells was determined by Transwell migration assays. We found that TRIB3 overexpression was significantly associated with increased grade, stage, and distant metastasis, positively correlated with ccRCC invasiveness, and also an independent risk factor for overall survival (OS). In addition, 361 differentially expressed genes (DEGs) related to TRIB3 were identified. Functional enrichment analysis showed that DEGs were mainly enriched in humoral immune responses, collagen-containing extracellular matrix, and serine hydrolase activity. Immune landscape characterization revealed that TRIB3 expression was significantly and negatively associated with CD8+ T and hematopoietic stem cells, whereas it was positively associated with NK T and macrophage M1 cells. Single-cell sequencing showed that localization and binding targets of TRIB3 mainly involved monocytes/macrophages and CD4+ and CD8+ T cells. Overall, our study revealed that elevated TRIB3 expression represents a promising prognostic marker for ccRCC patients and may play a key role in tumor microenvironment modulation.

Entities:  

Keywords:  TRIB3; biological significance; ccRCC; immune landscape characterization

Mesh:

Substances:

Year:  2022        PMID: 35726370      PMCID: PMC9275882          DOI: 10.1080/21655979.2022.2086380

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   6.832


Highlights

Elevated TRIB3 levels are associated with poorer clinicopathological variables TRIB3 overexpression enhances the invasiveness of ccRCC cells High TRIB3 levels represent an independent risk factor for OS Localization and binding targets of TRIB3 and 361 DEGs related to it are identified

Introduction

Renal cell carcinoma (RCC) is one of the most common tumors of the urinary system [1]. Worldwide, approximately 400,000 people are diagnosed with RCC and 175,000 die from the disease annually [2], and its incidence continues to rise. RCC demonstrates histological subtypes, the most common being kidney renal clear cell carcinoma (ccRCC) [3]. Recently, the incidence of ccRCC has increased [4]. The identification of molecular markers with high specificity for ccRCC is crucial for effective early diagnosis, treatment, and accurate prediction of prognosis, and it is also important for the designing individualized treatment regimens. TRIB3 is the mammalian homolog of the Drosophila Trbl gene [5] which encodes a pseudokinase that acts as a negative regulator of various signaling pathways. Early studies showed that TRIB3 plays an important role in apoptosis, differentiation, and the cellular responses to stress [6-8]. Recent studies have found that TRIB3 is highly expressed in many tumors, including breast [9], lung [10,11], colorectal [12], and liver [13] cancers, and it is closely related to tumor stage, recurrence, and prognosis [14]. TRIB3 has also been shown to plays an anti-apoptotic role in doxorubicin-treated gastric cancer cell lines and be highly expressed in gastric cancer tumors, and is related to poor patient prognosis [15]. In addition, high TRIB3 expression correlates with advanced clinical stage and poor differentiation in many cancers [16]. Several studies have also shown that TRIB3 knockdown inhibits the growth of rectal cancer and breast cancer cells [17,18]. Collectively, these results suggest a role for TRIB3 in promoting cancer growth and indicate that TRIB3 may be a prognostic marker and/or therapeutic target. However, the role of TRIB3 in ccRCC or its correlation with clinicopathological features and prognosis remains unknown. Thus, it is suggested that TRIB3 may be a safe and effective novel target for tumor therapy. TRIB3 may be highly expressed in ccRCC, which preliminarily unveils the role of TRIB3 in the occurrence and development of RCC, but the relationship and mechanism involving TRIB3 and clinicopathological variables in ccRCC remain unclear; hence, further research is needed. In this study, we explored the correlation between TRIB3 expression and clinical pathological grade in ccRCC and the prognosis of patients in order to clarify the influence of promoting or inhibiting TRIB3 expression on cell biological behavior, such as the invasiveness of ccRCC cells. Concurrently, we explored DEGs related to TRIB3 expression and potential signaling pathways involving TRIB3 and clarified the correlation between TRIB3 and tumor-infiltrating immune cells in ccRCC. This is of great significance to further explore the molecular regulatory mechanisms in ccRCC and can provide novel therapeutic strategies and targets for developing new methods for the diagnosis and treatment of ccRCC.

Materials and methods

RNA sequencing datasets and bioinformatics analysis

The ccRCC gene expression dataset (611 samples, Workflow Type: HTSeq-FPKM) and corresponding clinical information were downloaded from The Cancer Genome Atlas (TCGA) in June 2021. Of the 611 samples, 72 were normal paracancerous kidney samples and 539 were ccRCC samples. After excluding 47 samples with incomplete information, the dataset consisted of 72 normal samples and 496 ccRCC samples (Table 1). The Gene Expression Profiling Interactive Analysis (GEPIA) portal was also employed. The GEPIA ccRCC dataset consists of 100 normal samples and 523 ccRCC samples. For analysis of TRIB3-high and TRIB3-low groups within TCGA dataset, patients were assigned to two groups using the median TRIB3 expression level as the cutoff value.
Table 1.

Clinicopathological characteristics of patients in TCGA ccRCC dataset.

Clinical characteristics Total (496)%
Age at diagnosis (y)<60≥6022826845.9754.03
GradeG1102.02
G221443.15
G319639.52
G47615.32
StageI24248.79
II5110.28
III12224.60
IV8116.33
GenderFemale17134.48
Male32565.52
Tumor sizeT124850.00
T26212.50
T317535.28
T4112.22
NodeNX24850.00
N023346.98
N1153.02
MetastasisM041884.27
M17815.73
Clinicopathological characteristics of patients in TCGA ccRCC dataset.

Identification of DEGs related to TRIB3 expression and functional enrichment analysis

The DEGs between low and high TRIB3 expression groups (cutoff value was set as median expression level of TRIB3) were identified using the limma package [19]. DEGs with log|FC| (fold change) ≥ and P-value <0.01 were considered statistically significant. Then the DEGs were uploaded to the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING; http://string-db.org) and a protein–protein interaction (PPI) network was constructed (interaction score was set > 0.900). Next, functional enrichment analysis based on gene ontology (GO) [20] and Kyoto Encyclopedia of Genes and Genomes (KEGG) [21] databases were utilized to explore the potential biological functions of the DEGs by using the ClusterProfiler package [22].

Abundance of tumor-infiltrating lymphocytes (TILs) and the single-cell sequencing across ccRCC

The Tumor IMmune Estimation Resource algorithm database (https://cistrome.shinyapps.io/timer/) was used to estimate the abundance of TILs in the ccRCC samples [23]. Meanwhile, the single-cell RNA-seq datasets, GSE111360, GSE139555, and GSE145281, were investigated in this study from the Tumor Immune Single-cell Hub to characterize tumor microenvironments at the single-cell resolution [24].

Gene set enrichment analysis (GSEA)

GSEA was performed using the GSEA 4.1.0 software (http://software.broadinstitute.org/gsea/index.jsp) [25]. KEGG pathway enrichment analysis was performed using the dataset release number v.7.4. The TRIB3-high and TRIB3-low expression groups were used as phenotype labels. Enrichment was performed 1,000 times, and the nominal P-value and normalized enrichment scores were used to identify pathways enriched for each phenotype.

TRIB3 association with immune phenotype

The Tumor and Immune System Interaction Database (TISIDB; http://cis.hku.hk/TISIDB/index.php) was used to analyze the relationship between TRIB3 and tumor immunity [26]. TISIDB is a web portal that integrates multiple heterogeneous data types. We screened all tumor immune factors related to TRIB3 using the parameters (i) relationships between abundance of 28 TIL subtypes and expression, copy number, methylation, or mutation of TRIB3, (ii) relationships between three kinds of immunomodulators and the expression, copy number, methylation, or mutation of TRIB3, and (iii) the distribution of TRIB3 expression across immune and molecular subtypes, and selected for presentation those most significantly related to TRIB3.

Cell lines, culture conditions, and reagents

786O cells were obtained from ATCC, and was maintained in DMEM (Gibco, 11960044) supplemented with 10% fetal bovine serum (Gibco). Transwell assay-related reagent consumables were as follows: Matrigel Basement Membrane Matrix (BD, #356234, USA), Costar 6.5-mm Transwell Permeable Support with 8.0-μm Pore Polycarbonate Membrane (Corning, #3422, USA), Crystal Violet Stain solution, 0.1% (Solarbio, #G1063, China). TRIB3-overexpression plasmid (Qingke, China). TRIB3 target sequences: Human-TRIB3-siRNA-F: 5′-GGAGUUGGAUGACAACUUATT-3′; Human-TRIB3-siRNA-R: 5′-UAAGUUGUCAUCCAACUCCTT-3′.

Reverse transcription and quantitative reverse transcription-PCR (RT-qPCR)

Total RNA was isolated from cultured cells and converted into cDNA using specific primers and the HiScript III cDNA synthesis kit (Vazyme, Nanjing, China). The following primers were used: TRIB3-F: 5′-CGAGGCCGTCACCAAGAAC-3′, TRIB3-R: 5′-GTAGTGGTCGATGCGGTAGA-3′. The mRNA levels of IR were determined using RT-qPCR on a CFX96 Touch real-time PCR detection system (Bio-Rad, Hercules, CA, USA). Actin was used as an internal reference gene.

Western blot analysis

Cultured cells were lysed using 0.5% NP-40 buffer containing 50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 0.5% Nonidet P-40, and a cocktail of protease inhibitors (Sigma-Aldrich, St. Louis, Missouri, USA). After centrifugation at 16,000 × g at 4°C for 15 min, lysate supernatants were analyzed using western blotting according to standard procedures. Anti-TRIB3 antibody (ABclonal, A5424, 1:1000). Protein abundance was detected by measuring chemiluminescence on a Typhoon FLA 9500 instrument (GE Healthcare, Little Chalfont, UK).

Statistical analyses

All statistical analyses were performed using the R software (v.3.6.3). Wilcoxon’s signed rank test and logistic regression were used to analyze the relationship between clinicopathological characteristics and TRIB3 levels. Cox regression and Kaplan–Meier methods were used to analyze clinicopathological features associated with OS. Multivariate Cox analysis was used to compare the relationships among TRIB3 expression, survival, and other clinical features. Spearman’s correlation coefficient was used to examine relationships between TRIB3 and immune parameters. P < 0.05 was considered statistically significant.

Result

Our study was the first to systematically reveal the correlation between TRIB3 and clinical pathological grade of ccRCC and patient prognosis and to clarify the influence of promoting or inhibiting TRIB3 in terms of cell biological behaviors such as the invasiveness of ccRCC cells. Simultaneously, we explored the DEGs related to TRIB3 expression and potential signaling pathways related to TRIB3 and clarified the correlation between TRIB3 and tumor-infiltrating immune cells in ccRCC, which is novel and of great significance.

Patient characteristics

Clinicopathological and gene expression data for 496 patients with confirmed primary ccRCC were downloaded from TCGA (Table 1). Of the 496 patients, 325 (65.52%) were male and 268 (54.03%) were aged above 60 years. In our cohort, tumor grade frequencies were G1, 10 cases (2.02%); G2, 214 cases (43.15%); G3, 196 cases (39.52%); and G4, 76 cases (15.32%). There were 242 cases (48.79%) with stage I disease, 51 cases (10.28%) with stage II, 122 cases (24.60%) with stage III, and 81 (16.33%) stage IV cases. With respect to tumor–node–metastasis (TNM) staging, most cases were T1, N0, M0, and distant metastasis was absent in 418 patients (84.27%).

Expression of TRIB3 in ccRCC and adjacent tissues

We first analyzed the expression of TRIB3 in 496 ccRCC tissues and 72 adjacent normal tissues in TCGA dataset. Notably, TRIB3 was expressed at significantly higher levels in tumor tissue than in normal kidney tissue (Figure 1(a), p < 0.001). Similar results were obtained for the evaluation of TRIB3 in 72 pairs of tumor samples and paracancerous tissues in TCGA dataset, which showed that TRIB3 was expressed at significantly higher levels in ccRCC tissue than in normal kidney tissue (Figure 1(b), p < 0.001). These results suggested that TRIB3 expression was dysregulated in ccRCC; thus, it may play an important role in promoting tumor growth.
Figure 1.

Associations between TRIB3 expression and clinicopathologic characteristics of ccRCC patients.

Associations between TRIB3 expression and clinicopathologic characteristics of ccRCC patients.

Associations between TRIB3 expression in ccRCC and clinicopathological variables

We next determined whether TRIB3 expression in ccRCC tumors correlated with common clinicopathological variables. The 496 patients in TCGA dataset were assigned to high and low TRIB3 expression groups using the median TRIB3 expression level as the cutoff. As shown in Figure 1(c–h), high TRIB3 expression was significantly correlated with clinical stage (P < 0.001), pathological grade (P < 0.001), gender (P < 0.001), primary tumor size (P < 0.001), distant metastasis (P = 0.003), and patient follow-up status (fustat). Univariate Cox regression analysis showed that high TRIB3 levels were significantly associated with poor prognosis (Table 2); that is, high TRIB3 expression correlated significantly with grade (hazard ratio [HR] = 7.37 for G4 vs G1), stage (HR = 1.87 for stage III vs stage I, HR = 2.13 for stage IV vs stage I), primary tumor (HR = 2.05 for T3 vs T1), distant metastasis (HR = 1.98 for M1 vs M0), and gender (HR = 2.17 for male vs female) (all P < 0.05).
Table 2.

Logistic regression analysis of the associations between TRIB3 expression and clinicopathological characteristics.

Clinical characteristicsTotal (N)Hazard ratio in TRIB3 expressionp-Value
Grade (G4 vs. G1)897.37 (2.19–29.48).002
Stage (III vs. I)3881.87 (1.21–2.89).004
Stage (IV vs. I)3472.13 (1.29–3.57).003
Tumor size (T3 vs. T1)4502.05 (1.40–3.01).000
Metastasis (M1 vs. M0)4961.98 (1.21–3.31).007
Gender (male vs. female)4962.17 (1.51–3.13).000
Logistic regression analysis of the associations between TRIB3 expression and clinicopathological characteristics.

Effects of inhibiting TRIB3 expression and overexpression of TRIB3 on cell invasiveness as seen using Transwell assays

To examine the functional role of TRIB3 in ccRCC in vitro, we constructed TRIB3-siRNA and TRIB3-overexpression plasmids to study the effects of TRIB3 on the biological behavior of ccRCC cells, and we selected the invasive force of cells as the measurement index. We verified the transfection efficiency of TRIB3-siRNA and TRIB3-overexpression plasmids using RT-qPCR and western blotting, respectively (Figure 1(i–n)). Results showed that inhibiting the expression of TRIB3 subdued the invasiveness of ccRCC cells, whereas promoting the expression of TRIB3 enhanced the invasiveness of ccRCC cells (Figure 1(o,p)). Therefore, the upregulation of TRIB3 expression is related to advanced disease and distant metastasis and positively correlated with the invasiveness of ccRCC cells.

Survival outcomes and Cox regression analysis

Kaplan–Meier survival analysis of TCGA ccRCC dataset showed that patients with high TRIB3-expressing tumors had significantly shorter survival times than patients with low TRIB3-expressing tumors (Figure 2(a), p < 0.001). The results of this analysis was verified using an independent GEPIA dataset (Figure 2(b), p < 0.001). Univariate analysis of clinicopathological characteristics and OS of the patients in TCGA ccRCC cohort showed that age, grade, stage, T, M, and TRIB3 expression were significantly correlated with OS (P < 0.001; Table 3), and age, grade, stage, and TRIB3 expression remained significantly associated with OS in multivariate analysis (Figure 2(c), p < 0.05). Other factors, such as lymph node infiltration, were not included in the analysis because of the large number of Nx cases.
Figure 2.

Survival outcomes and Cox regression analysis in ccRCC patients.

Table 3.

Univariate and multivariate analysis of the associations between TRIB3 expression and overall survival of ccRCC patients.

ParameterUnivariate analysis
Multivariate analysis
HR95% CIp-ValueHR95% CIp-Value
Age1.031.02–1.050.0001.041.02–1.05.000
Grader2.291.85–2.840.0001.461.15–1.85.002
Stage1.881.65–2.160.0001.791.15–2.78.010
Tumor size1.941.63–2.300.0000.810.54–1.21.301
Metastasis4.283.11–5.910.0001.260.65–2.44.500
TRIB31.011.01–1.020.0001.011.00–1.02.003

Bold values indicate P < 0.05. HR, hazard ratio; CI, confidence interval.

Univariate and multivariate analysis of the associations between TRIB3 expression and overall survival of ccRCC patients. Bold values indicate P < 0.05. HR, hazard ratio; CI, confidence interval. Survival outcomes and Cox regression analysis in ccRCC patients.

DEGs related to TRIB3 expression were identified

As depicted in Figure 2(d), a total of 361 DEGs related to TRIB3 were identified and DEGs with most significant changes included ITPKA, LMO1, TRIM54, and PPDPFL. A PPI network was constructed using STRING (Figure 2(e)). Functional enrichment analysis (Figure 2(f,g), Table 4) indicated that the DEGs were mostly enriched in humoral immune responses, collagen-containing extracellular matrix, serine hydrolase activity and rheumatoid arthritis.
Table 4.

GO (a) and KEGG (b) pathways enrichment analysis of DEGs in the most significant module.

TermDescriptionGene Ratiop-Value(adjusted)
a.   
GO:0017171serine hydrolase activity8/421.87E-06
GO:0020037heme binding6/424.13E-05
GO:0004497monooxygenase activity5/420.000100021
GO:0006959humoral immune response8/430.001652096
GO:0023061signal release8/430.001652096
GO:0050714GO:0062023positive regulation of protein secretion6/436/430.0029326340.0120258860.012025886
GO:0072562collagen-containing extracellular4/430.012025886
GO:0035580matrix3/43 
b.blood microparticle 7.54E-05
hsa04657specific granule lumen6/310.001220886
hsa04668IL-17 signaling pathway5/310.008917891
hsa04061TNF signaling pathway Viral protein interaction with cytokine and cytokine receptor4/31 

Abbreviations: GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; DEGs: differentially expressed genes.

GO (a) and KEGG (b) pathways enrichment analysis of DEGs in the most significant module. Abbreviations: GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; DEGs: differentially expressed genes.

Abundance of TILs and single-cell sequencing across ccRCC

As shown in Figure 3(a), TRIB3 expression exhibited a significantly negative association with CD8+ T (cor. = −0.278) and hematopoietic stem cell (cor. = −0.261) numbers and positive association with NK T cells (cor. = 0.373) and macrophage M1 (cor. = 0.317). As shown in Figure 3(b–d), the single-cell sequencing dataset GSE111360, GSE139555, and GSE145281 suggested localization and binding targets of TRIB3 mainly in monocytes/macrophages and CD4+ and CD8+ T cells.
Figure 3.

Abundance of tumor-infiltrating lymphocytes (TILs) and single-cell sequencing across ccRCC.

Abundance of tumor-infiltrating lymphocytes (TILs) and single-cell sequencing across ccRCC.

GSEA identifies potential TRIB3-related signaling pathways

To investigate the involvement of TRIB3 in ccRCC, we performed GSEA for tumors with high and low TRIB3 expression. GSEA showed that TRIB3 was enriched in distinct pathways for the two tumor phenotypes. Thus, ‘adipocytokine signaling pathway’, ‘adherens junction’, and ‘pathways in cancer’ were enriched in the TRIB3-low expression phenotype, whereas ‘ribosome’, ‘amyotrophic lateral sclerosis’, and ‘alpha linolenic acid metabolism’ were enriched in the TRIB3-high expression phenotype (Figure 4(a–f)).
Figure 4.

Gene set enrichment analysis of TRIB3 expression in ccRCC.

Gene set enrichment analysis of TRIB3 expression in ccRCC.

TRIB3 correlations with tumor-infiltrating immune cells in ccRCC

To explore the relationship between TRIB3 expression and tumor immunity, we performed Spearman’s correlation analysis in TISIDB using the immunostimulator (which samples a range of immunostimulatory molecules) and lymphocyte settings (which samples the abundance of TILs across a range of human cancers). We found that the expression of TRIB3 was positively correlated with the expression of immunostimulator and abundance of TILs in ccRCC (Figure 5(j,k)), and was significantly correlated with the abundance of activated CD4+ T cells (r = 0.283, Figure 5(a)), CD56dim natural killer cells (r = 0.274, Figure 5(b)), central memory CD4+ T cells (r = 0.28, Figure 5(c)), and central memory CD8+ T cells (r = 0.405, Figure 5(d)), as well as with increased expression of CD276 (r = 0.339, Figure 5e), IL-6 (r = 0.464, figure 5(f)), TNFRSF18 (r = 0.326, Figure 5(g)), and TNFSF9 (r = 0.315, Figure 5(h)). Finally, Figure 5(i) shows that TRIB3 expression was widely distributed in different immune subtype – wound healing (C1), IFN-gamma dominant (C2), inflammatory (C3), lymphocyte-depleted (C4), immunologically quiet (C5), and TGF-b dominant (C6) – in ccRCC, indicating that TRIB3 has influence on all immune phenotypes.
Figure 5.

TRIB3 expression differentially correlates with immune cell infiltration in ccRCC and other cancers.

TRIB3 expression differentially correlates with immune cell infiltration in ccRCC and other cancers.

Discussion

ccRCC is a malignant tumor that has devastating effects on human health. Moreover, the economic burden of ccRCC is substantial, affecting both families and society. It is important to have accurate and concise information about the pathology of ccRCC when treating patients. This will improve the decision-making process related to patient care and individualized treatments; therefore, it is important to use various approaches, such as data mining, to find robust molecular markers and therapeutic targets to use in the diagnosis, prognosis, and treatment of ccRCC. As a stress sensor, TRIB3 responds to a variety of stresses [27-29]. It regulates homeostasis, metabolic diseases, and cancer by interacting with intracellular signals and functional protein pathways [5,30,31]. In this study, we implemented computational biology methods and experimental verification techniques to identify and characterize the role of TRIB3 in the development, progression, and metastasis of ccRCC. We demonstrated the efficiency of integrating bioinformatics with in vitro experiments to explore potential biomarkers and therapeutic targets for ccRCC. Furthermore, we revealed the role of TRIB3 in the malignant progression, immune landscape characteristics, tumor microenvironment, and clinical outcomes of patients with ccRCC. These findings encourage further exploration of the pathogenesis of ccRCC. Previous studies have shown that TRIB3 expression is elevated in several types of cancer, and it promotes the migration of tumor cells through modulation of various oncoproteins [11,12,32,33]. Inhibiting the expression of TRIB3 may significantly reduce the occurrence and progression of cancer [34,35]. In this study, we found that the expression of TRIB3 increased with the advancement of clinical stage, pathological grade, primary tumor size, distant metastasis, and patient fustat, suggesting that TRIB3 promotes ccRCC progression and increases the risk of invasion and deterioration of ccRCC. Kaplan–Meier analysis showed that high expression of TRIB3 correlated with shorter OS rates. These results suggest that the expression level of TRIB3 may serve as an index to predict clinical outcomes in patients with ccRCC. Similarly, in lung, breast, and ovarian cancers, high TRIB3 expression promotes tumor malignancy [9,11,36]. Evidently, TRIB3 may play a tumor-promoting role. In addition, TRIB3 is closely associated with tumor immunity. The immune landscape characteristics examined in this study showed that TRIB3 expression had a significant negative association with CD8+ T and hematopoietic stem cells; by contrast, it had a positive association with NK cells and M1 macrophages. Single-cell sequencing revealed the binding targets of TRIB3 and their locations, which were mainly in monocytes/macrophages, CD4+ T cells, and CD8+ T cells. The association of TRIB3 and tumor immunity has been reported in other types of tumors [37,38]; for example, in colorectal cancer, TRIB3 can reduce CD8+ T cell infiltration and induce immune evasion by inhibiting the STAT1-CXCL10 axis, suggesting that TRIB3 may be an attractive therapeutic target for ‘warming up’ of immune-resistant ‘cold’ tumors [37]. The mechanism of TRIB3 has been investigated; previous studies have shown that TRIB3 promotes MYC-associated lymphoma development through suppression of UBE3B-mediated MYC degradation [33]. Additionally, TRIB3 interacts with β-catenin and TCF4 to increase the stem cell features of colorectal cancer stem cells and trigger tumorigenesis [12]. In our study, we performed enrichment analysis of 361 DEGs related to TRIB3. The analysis showed that TRIB3 was related to humoral immune responses, the collagen-containing extracellular matrix, serine hydrolase activity, and rheumatoid arthritis. This highlights the focus areas for future research. Thus, we concluded that TRIB3 is a potential oncogene and therapeutic target for ccRCC.

Conclusion

In summary, this study provided the first evidence demonstrating that TRIB3 knockdown or overexpression can affect cell invasiveness and revealed that high levels of TRIB3 represent an independent risk factor for OS. Immune landscape characterization showed that TRIB3 was significantly associated with the tumor immune microenvironment in ccRCC, including altered patterns of TILs. Elevated TRIB3 expression is a promising prognostic marker for ccRCC patients and may play a key role in tumor microenvironments, which indicates a novel molecular mechanism involving TRIB3 in ccRCC and identifies TRIB3 as a novel therapeutic target for ccRCC therapy from bench to clinic. Click here for additional data file.
  38 in total

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Journal:  OMICS       Date:  2012-03-28

2.  TRIB3 promotes hepatocellular carcinoma growth and predicts poor prognosis.

Authors:  Xiao-Jun Wang; Fei-Fei Li; Yi-Jing Zhang; Man Jiang; Wan-Hua Ren
Journal:  Cancer Biomark       Date:  2020       Impact factor: 4.388

3.  The stress-regulated protein p8 mediates cannabinoid-induced apoptosis of tumor cells.

Authors:  Arkaitz Carracedo; Mar Lorente; Ainara Egia; Cristina Blázquez; Stephane García; Valentin Giroux; Cedric Malicet; Raquel Villuendas; Meritxell Gironella; Luis González-Feria; Miguel Angel Piris; Juan L Iovanna; Manuel Guzmán; Guillermo Velasco
Journal:  Cancer Cell       Date:  2006-04       Impact factor: 31.743

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Authors:  Taiwen Li; Jingyu Fan; Binbin Wang; Nicole Traugh; Qianming Chen; Jun S Liu; Bo Li; X Shirley Liu
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

6.  TISIDB: an integrated repository portal for tumor-immune system interactions.

Authors:  Beibei Ru; Ching Ngar Wong; Yin Tong; Jia Yi Zhong; Sophia Shek Wa Zhong; Wai Chung Wu; Ka Chi Chu; Choi Yiu Wong; Chit Ying Lau; Ian Chen; Nam Wai Chan; Jiangwen Zhang
Journal:  Bioinformatics       Date:  2019-10-15       Impact factor: 6.937

7.  TRIB3 reduces CD8+ T cell infiltration and induces immune evasion by repressing the STAT1-CXCL10 axis in colorectal cancer.

Authors:  Shuang Shang; Yu-Wei Yang; Fei Chen; Liang Yu; Shuo-Hao Shen; Ke Li; Bing Cui; Xiao-Xi Lv; Cheng Zhang; Chen Yang; Jing Liu; Jiao-Jiao Yu; Xiao-Wei Zhang; Ping-Ping Li; Sheng-Tao Zhu; Hai-Zeng Zhang; Fang Hua
Journal:  Sci Transl Med       Date:  2022-01-05       Impact factor: 17.956

8.  Down-regulation of TRIB3 inhibits the progression of ovarian cancer via MEK/ERK signaling pathway.

Authors:  Shuang Wang; Caixia Wang; Xiao Li; Yuexin Hu; Rui Gou; Qian Guo; Xin Nie; Juanjuan Liu; Liancheng Zhu; Bei Lin
Journal:  Cancer Cell Int       Date:  2020-08-28       Impact factor: 5.722

Review 9.  Epidemiology of Renal Cell Carcinoma.

Authors:  Umberto Capitanio; Karim Bensalah; Axel Bex; Stephen A Boorjian; Freddie Bray; Jonathan Coleman; John L Gore; Maxine Sun; Christopher Wood; Paul Russo
Journal:  Eur Urol       Date:  2018-09-19       Impact factor: 20.096

10.  TRIB3 supports breast cancer stemness by suppressing FOXO1 degradation and enhancing SOX2 transcription.

Authors:  Jin-Mei Yu; Wei Sun; Zhen-He Wang; Xiao Liang; Fang Hua; Ke Li; Xiao-Xi Lv; Xiao-Wei Zhang; Yu-Ying Liu; Jiao-Jiao Yu; Shan-Shan Liu; Shuang Shang; Feng Wang; Zhao-Na Yang; Chen-Xi Zhao; Xue-Ying Hou; Ping-Ping Li; Bo Huang; Bing Cui; Zhuo-Wei Hu
Journal:  Nat Commun       Date:  2019-12-16       Impact factor: 14.919

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