| Literature DB >> 35726370 |
Xin-Qiang Wu1,2, Xi Tian1,2, Fu-Jiang Xu1, Yue Wang1,2, Wen-Hao Xu1,2, Jia-Qi Su1,2, Yuan-Yuan Qu1,2, Jian-Yuan Zhao3, Hai-Liang Zhang1,2, Ding-Wei Ye1,2.
Abstract
Tribbles homolog 3 (TRIB3), a pseudokinase that regulates multiple intracellular signaling pathways, has been reported to promote the growth of multiple tumors. However, its role in clear cell renal cell carcinoma (ccRCC) remains unelucidated. We evaluated the role of TRIB3 in ccRCC using publicly available data from The Cancer Genome Atlas and analyzed its relationship with the tumor microenvironment; moreover, we used gene knockout and overexpression techniques to detect the effects of TRIB3 on the biological behavior of ccRCC cells. RT-qPCR and western blotting were used to detect transfection efficiency, and the invasiveness of ccRCC cells was determined by Transwell migration assays. We found that TRIB3 overexpression was significantly associated with increased grade, stage, and distant metastasis, positively correlated with ccRCC invasiveness, and also an independent risk factor for overall survival (OS). In addition, 361 differentially expressed genes (DEGs) related to TRIB3 were identified. Functional enrichment analysis showed that DEGs were mainly enriched in humoral immune responses, collagen-containing extracellular matrix, and serine hydrolase activity. Immune landscape characterization revealed that TRIB3 expression was significantly and negatively associated with CD8+ T and hematopoietic stem cells, whereas it was positively associated with NK T and macrophage M1 cells. Single-cell sequencing showed that localization and binding targets of TRIB3 mainly involved monocytes/macrophages and CD4+ and CD8+ T cells. Overall, our study revealed that elevated TRIB3 expression represents a promising prognostic marker for ccRCC patients and may play a key role in tumor microenvironment modulation.Entities:
Keywords: TRIB3; biological significance; ccRCC; immune landscape characterization
Mesh:
Substances:
Year: 2022 PMID: 35726370 PMCID: PMC9275882 DOI: 10.1080/21655979.2022.2086380
Source DB: PubMed Journal: Bioengineered ISSN: 2165-5979 Impact factor: 6.832
Clinicopathological characteristics of patients in TCGA ccRCC dataset.
| Clinical characteristics | Total (496) | % | |
|---|---|---|---|
| Age at diagnosis (y) | <60 | 228 | 45.97 |
| Grade | G1 | 10 | 2.02 |
| G2 | 214 | 43.15 | |
| G3 | 196 | 39.52 | |
| G4 | 76 | 15.32 | |
| Stage | I | 242 | 48.79 |
| II | 51 | 10.28 | |
| III | 122 | 24.60 | |
| IV | 81 | 16.33 | |
| Gender | Female | 171 | 34.48 |
| Male | 325 | 65.52 | |
| Tumor size | T1 | 248 | 50.00 |
| T2 | 62 | 12.50 | |
| T3 | 175 | 35.28 | |
| T4 | 11 | 2.22 | |
| Node | NX | 248 | 50.00 |
| N0 | 233 | 46.98 | |
| N1 | 15 | 3.02 | |
| Metastasis | M0 | 418 | 84.27 |
| M1 | 78 | 15.73 |
Figure 1.Associations between TRIB3 expression and clinicopathologic characteristics of ccRCC patients.
Logistic regression analysis of the associations between TRIB3 expression and clinicopathological characteristics.
| Clinical characteristics | Total (N) | Hazard ratio in TRIB3 expression | p-Value |
|---|---|---|---|
| Grade (G4 vs. G1) | 89 | 7.37 (2.19–29.48) | . |
| Stage (III vs. I) | 388 | 1.87 (1.21–2.89) | . |
| Stage (IV vs. I) | 347 | 2.13 (1.29–3.57) | . |
| Tumor size (T3 vs. T1) | 450 | 2.05 (1.40–3.01) | . |
| Metastasis (M1 vs. M0) | 496 | 1.98 (1.21–3.31) | . |
| Gender (male vs. female) | 496 | 2.17 (1.51–3.13) | . |
Figure 2.Survival outcomes and Cox regression analysis in ccRCC patients.
Univariate and multivariate analysis of the associations between TRIB3 expression and overall survival of ccRCC patients.
| Parameter | Univariate analysis | Multivariate analysis | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI | p-Value | HR | 95% CI | p-Value | |
| Age | 1.03 | 1.02–1.05 | 1.04 | 1.02–1.05 | . | |
| Grader | 2.29 | 1.85–2.84 | 1.46 | 1.15–1.85 | . | |
| Stage | 1.88 | 1.65–2.16 | 1.79 | 1.15–2.78 | . | |
| Tumor size | 1.94 | 1.63–2.30 | 0.81 | 0.54–1.21 | .301 | |
| Metastasis | 4.28 | 3.11–5.91 | 1.26 | 0.65–2.44 | .500 | |
| TRIB3 | 1.01 | 1.01–1.02 | 1.01 | 1.00–1.02 | . | |
Bold values indicate P < 0.05. HR, hazard ratio; CI, confidence interval.
GO (a) and KEGG (b) pathways enrichment analysis of DEGs in the most significant module.
| Term | Description | Gene Ratio | p-Value |
|---|---|---|---|
| a. | |||
| GO:0017171 | serine hydrolase activity | 8/42 | 1.87E-06 |
| GO:0020037 | heme binding | 6/42 | 4.13E-05 |
| GO:0004497 | monooxygenase activity | 5/42 | 0.000100021 |
| GO:0006959 | humoral immune response | 8/43 | 0.001652096 |
| GO:0023061 | signal release | 8/43 | 0.001652096 |
| GO:0050714 | positive regulation of protein secretion | 6/43 | 0.0029326340.012025886 |
| GO:0072562 | collagen-containing extracellular | 4/43 | 0.012025886 |
| GO:0035580 | matrix | 3/43 | |
| b. | blood microparticle | 7.54E-05 | |
| hsa04657 | specific granule lumen | 6/31 | 0.001220886 |
| hsa04668 | IL-17 signaling pathway | 5/31 | 0.008917891 |
| hsa04061 | TNF signaling pathway Viral protein interaction with cytokine and cytokine receptor | 4/31 |
Abbreviations: GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; DEGs: differentially expressed genes.
Figure 3.Abundance of tumor-infiltrating lymphocytes (TILs) and single-cell sequencing across ccRCC.
Figure 4.Gene set enrichment analysis of TRIB3 expression in ccRCC.
Figure 5.TRIB3 expression differentially correlates with immune cell infiltration in ccRCC and other cancers.