Literature DB >> 35723062

Revolutionized virome research using systems microbiology approaches.

Suwalak Chitcharoen1,2, Pavaret Sivapornnukul2,3, Sunchai Payungporn2,3.   

Abstract

Currently, both pathogenic and commensal viruses are continuously being discovered and acknowledged as ubiquitous components of microbial communities. The advancements of systems microbiological approaches have changed the face of virome research. Here, we focus on viral metagenomic approach to study virus community and their interactions with other microbial members as well as their hosts. This review also summarizes challenges, limitations, and benefits of the current virome approaches. Potentially, the studies of virome can be further applied in various biological and clinical fields.

Entities:  

Keywords:  Virome; systems microbiology; viral metagenomic; virus discovery; virus–host interaction

Mesh:

Year:  2022        PMID: 35723062      PMCID: PMC9335507          DOI: 10.1177/15353702221102895

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  164 in total

1.  Single-particle measurements of filamentous influenza virions reveal damage induced by freezing.

Authors:  Jack C Hirst; Edward C Hutchinson
Journal:  J Gen Virol       Date:  2019-12       Impact factor: 3.891

2.  Effect of Oral Capsule- vs Colonoscopy-Delivered Fecal Microbiota Transplantation on Recurrent Clostridium difficile Infection: A Randomized Clinical Trial.

Authors:  Dina Kao; Brandi Roach; Marisela Silva; Paul Beck; Kevin Rioux; Gilaad G Kaplan; Hsiu-Ju Chang; Stephanie Coward; Karen J Goodman; Huiping Xu; Karen Madsen; Andrew Mason; Gane Ka-Shu Wong; Juan Jovel; Jordan Patterson; Thomas Louie
Journal:  JAMA       Date:  2017-11-28       Impact factor: 56.272

3.  The Role of Maternal Breast Milk in Preventing Infantile Diarrhea in the Developing World.

Authors:  Christie G Turin; Theresa J Ochoa
Journal:  Curr Trop Med Rep       Date:  2014-06-01

4.  Zoonotic transmission of tuberculosis between pastoralists and their livestock in South-East Ethiopia.

Authors:  Balako Gumi; Esther Schelling; Stefan Berg; Rebuma Firdessa; Girume Erenso; Wondale Mekonnen; Elena Hailu; Ermias Melese; Jemal Hussein; Abraham Aseffa; Jakob Zinsstag
Journal:  Ecohealth       Date:  2012-04-17       Impact factor: 3.184

5.  A virome-wide clonal integration analysis platform for discovering cancer viral etiology.

Authors:  Xun Chen; Jason Kost; Arvis Sulovari; Nathalie Wong; Winnie S Liang; Jian Cao; Dawei Li
Journal:  Genome Res       Date:  2019-03-14       Impact factor: 9.043

6.  virMine: automated detection of viral sequences from complex metagenomic samples.

Authors:  Andrea Garretto; Thomas Hatzopoulos; Catherine Putonti
Journal:  PeerJ       Date:  2019-04-10       Impact factor: 2.984

7.  Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands.

Authors:  Joanna Warwick-Dugdale; Natalie Solonenko; Karen Moore; Lauren Chittick; Ann C Gregory; Michael J Allen; Matthew B Sullivan; Ben Temperton
Journal:  PeerJ       Date:  2019-04-25       Impact factor: 2.984

Review 8.  The Commensal Microbiota and Viral Infection: A Comprehensive Review.

Authors:  Na Li; Wen-Tao Ma; Ming Pang; Qin-Lei Fan; Jin-Lian Hua
Journal:  Front Immunol       Date:  2019-07-04       Impact factor: 7.561

9.  Reproducible protocols for metagenomic analysis of human faecal phageomes.

Authors:  Andrey N Shkoporov; Feargal J Ryan; Lorraine A Draper; Amanda Forde; Stephen R Stockdale; Karen M Daly; Siobhan A McDonnell; James A Nolan; Thomas D S Sutton; Marion Dalmasso; Angela McCann; R Paul Ross; Colin Hill
Journal:  Microbiome       Date:  2018-04-10       Impact factor: 14.650

10.  ViruSurf: an integrated database to investigate viral sequences.

Authors:  Arif Canakoglu; Pietro Pinoli; Anna Bernasconi; Tommaso Alfonsi; Damianos P Melidis; Stefano Ceri
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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  1 in total

Review 1.  Crosstalk between the Intestinal Virome and Other Components of the Microbiota, and Its Effect on Intestinal Mucosal Response and Diseases.

Authors:  Njinju Asaba Clinton; Sodiq Ayobami Hameed; Eugene Kusi Agyei; Joy Chinwendu Jacob; Victor Oyewale Oyebanji; Cyril Ekabe Jabea
Journal:  J Immunol Res       Date:  2022-09-27       Impact factor: 4.493

  1 in total

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