| Literature DB >> 35720840 |
Muhammad Shoaib1,2, Amjad Islam Aqib3, Muhammad Muddassir Ali4, Muhammad Ijaz5, Huma Sattar6, Awais Ghaffar7, Muhammad Sajid Hasni8, Zeeshan Ahmad Bhutta9, Khurram Ashfaq10, Muhammad Fakhar-E-Alam Kulyar11, Wanxia Pu1.
Abstract
Staphylococcus aureus (S. aureus) has become a leading animal and public health pathogen that keeps on transferring from one host to other, giving rise to newer strains by genetic shifts. The current study was designed to investigate the epidemiology and genetic relatedness of mecA gene in S. aureus isolated from pets, immediate individuals in contact with pets, and veterinary clinic environments. A total of n = 300 samples were collected from different veterinary hospitals in Pakistan using convenience sampling. The collected samples were subjected to microbiological and biochemical examination for the isolation of S. aureus. Methicillin resistance was investigated by both phenotypically using oxacillin disk diffusion assay and by genotypically targeting mecA gene by PCR. PCR amplicons were subjected for sequencing by Sanger method of sequencing, which were subsequently submitted to NCBI GenBank under the accession numbers MT874770, MT874771, and MT874772. Sequence evolutionary analysis and mecA gene characterization was done using various bioinformatics tools. Overall, 33.66% mecA genes harboring S. aureus strains were isolated from all sources (33.33% from pets, 46.0% from surrounding, and 28.0% from immediate contact individuals). The bioinformatics analysis noted that one SNP was identified at position c.253C>A (Transvertion). The phylogenetic tree (two clades) of S. aureus mecA revealed a possibility of inter-transmission of disease between the environment and pets. Frequency of adenine and thymine nucleotide in motifs were found to be the same (0.334). Cytosine and guanine frequency were also the same (0.166). Threonine was replaced by asparagine (p.T84D) in each sample of cat, environment, and human. On the other hand, protein structures ofcat-1 and cat-2 proteins were found identical while cat-3, environmental, and human proteins shared identical structures. The study thus concludes rising circulation of methicillin-resistant S. aureus (MRSA) strains in animal-human-environment interfaces, forecasting the development of novel strains withmodified range of resistance.Entities:
Keywords: MRSA; S. aureus; mecA gene; pet owners; pets; phylogenetic analysis
Year: 2022 PMID: 35720840 PMCID: PMC9201917 DOI: 10.3389/fvets.2022.900480
Source DB: PubMed Journal: Front Vet Sci ISSN: 2297-1769
Nucleotide sequence of the primers used for detection of mecA gene.
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| 310 | ( | |
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Figure 1Phenotypic identification of Staphylococcus aureus and methicillin-resistant S. aureus (MRSA). (A) A Yellow color growth of S. aureus (pinpoint colonies) on mannitol salt agar, NB: C3 mentioned on plate is sample number tested (B) methicillin resistant S. aureus (MRSA) identified by oxacillin disc (black arrow) diffusion assay.
Figure 2PCR pic of mecA gene at 310 bp. Lane L showing the ladder DNA, where Lane 8 and 9 are negative and positive control, respectively, and Lane 1–2 and 5–7 show mecA positive samples while Lane 3–4 express negative mecA isolates.
Infection status of methicillin resistance Staphylococcus aureus (mecA gene) isolates.
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| Cats | UAF Teaching Hospital Faisalabad, Pakistan | 70 | 62 (88.57) | 27 (38.57) |
| Al-Huda Pet Clinic and Boarding Center Faisalabad, Pakistan | 30 | 21 (70.0) | 13 (43.33) | |
| Pet-Aid Clinic Faisalabad, Pakistan | 50 | 37 (74.0) | 10 (20.0) | |
| Total | 150 | 120 (80.0) | 50 (33.33) | |
| Pet-Owner | UAF Teaching Hospital Faisalabad, Pakistan | 40 | 28 (70.0) | 12 (30.0) |
| Al-Huda Pet Clinic and Boarding Center Faisalabad, Pakistan | 30 | 17 (56.66) | 9 (30.0) | |
| Pet-Aid Clinic Faisalabad, Pakistan | 30 | 20 (66.66) | 7 (23.33) | |
| Total | 100 | 65 (65.0) | 28 (28.0) | |
| Environment | UAF Teaching Hospital Faisalabad, Pakistan | 20 | 15 (75.0) | 10 (50.0) |
| Al-Huda Pet Clinic and Boarding Center Faisalabad, Pakistan | 15 | 10 (66.66) | 8 (53.33) | |
| Pet-Aid Clinic Faisalabad, Pakistan | 15 | 10 (66.66) | 5 (33.33) | |
| Total | 50 | 35 (70.0) | 23 (46.0) | |
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| 300 | 220 (73.33) | 101 (33.66) |
No significant difference (P > 0.05) was noted at Staphylococcus aureus cadre.
Significant difference (P < 0.05) was noted at MRSA cadre among different sources.
Figure 3Alignment of Staphylococcus aureus mecA gene (Cat-1, Cat-2, Cat-3, Environmental, and Human sequence).
Figure 4Alignment of Staphylococcus aureus mecA protein sequences (A) Cat-1 and Cat-2 (B) Environment, Human, and Cat-3.
Polymorphic sites in the Staphylococcus aureus mecA gene.
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| Cat-1 | C |
| Cat-2 | C |
| Cat-3 | A |
| Environmental | A |
| Human | A |
Figure 5Phylogenetic tree of Staphylococcus aureus mecA gene.
Figure 6Nucleotide motifs of Staphylococcus aureus mecA gene.
Figure 7mecA protein motifs of Staphylococcus aureus.
Figure 8Gene structure of Staphylococcus aureus mecA gene amplified fragment.
Amino acid change in Staphylococcus aureus mecA protein.
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| 84 | Threonine | Threonine | Asparagine | Asparagine | Asparagine |
Figure 9Protein structure of Staphylococcus aureus mecA gene (A) Cat-1 and Cat-2, and (B) Environment, Human, and Cat-3.
Staphylococcus aureus mecA protein physical and chemical properties of proteins (Cat-1. Cat-2, Cat-3, Environmental, and Human).
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| Number of amino acids | 87 | 87 | 87 | 87 | 87 |
| MW | 9,915.28 | 9,915.28 | 9,928.28 | 9,928.28 | 9,928.28 |
| pI | 6.97 | 6.97 | 6.97 | 6.97 | 6.97 |
| Number of negatively charged residues | 12 | 12 | 12 | 12 | 12 |
| Number of positively charged residues | 12 | 12 | 12 | 12 | 12 |
| Total number of atoms | 1,397 | 1,397 | 1,397 | 1,397 | 1,397 |
| II | 36.30 | 36.30 | 39.03 | 39.03 | 39.03 |
| Aliphatic index | 72.87 | 72.87 | 72.87 | 72.87 | 72.87 |
| GRAVY | −0.779 | −0.779 | −0.811 | −0.811 | −0.811 |