| Literature DB >> 35719929 |
Han Yue1,2, Binbin Xu1,2, Jian Gao3, Yingwen Bi4, Kang Xue1,2, Jie Guo1,2, Rui Zhang1,2, Hui Ren1,2, Yifei Yuan1,2, Jiang Qian1,2.
Abstract
Purpose: To establish an easy and widely applicable prognostic prediction model for uveal melanoma (UM) based on a Chinese population. Patients andEntities:
Keywords: external validation; nomogram; prognostic model; survival probabilities; uveal melanoma (UM)
Year: 2022 PMID: 35719929 PMCID: PMC9201029 DOI: 10.3389/fonc.2022.879394
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Demographics and clinicopathologic characteristics of the patients in the training cohort and the validation cohorts.
| Variables | Training cohort | Validation cohorts | P value | |
|---|---|---|---|---|
| China | SEER | TCGA | ||
| (n = 295) | (n = 179) | (n = 77) | ||
| 49.4 ± 13.8 | 61.2 ± 14.1 | 61.7 ± 14.1 | <0.001 | |
| 12.6 ± 3.6 | ||||
| 8.8 ± 3.1 | ||||
| 0.010 | ||||
| Female | 157 (53.2) | 70 (39.1) | 34 (44.2) | |
| Male | 138 (46.8) | 109 (60.9) | 43 (55.8) | |
| 0.635 | ||||
| Right | 136 (46.1) | 87 (48.6) | ||
| Left | 159 (53.9) | 92 (51.4) | ||
| ≤0.05 | 147 (49.8) | |||
| >0.05, ≤0.3 | 81 (27.5) | |||
| >0.3 | 76 (22.7) | |||
| <0.001 | ||||
| No | 250 (84.8) | 119 (66.5) | 59 (76.6) | |
| Yes | 45 (15.2) | 60 (33.5) | 18 (23.4) | |
| 0.0157 | ||||
| No | 288 (97.6) | 173 (96.7) | ||
| Yes | 7 (2.4) | 6 (3.3) | ||
| 0.002 | ||||
| Spindle | 169 (57.3) | 28 (36.4) | ||
| Epithelioid | 40 (13.6) | 12 (15.6) | ||
| Mix | 86 (29.1) | 37 (48.0) | ||
| 0.005 | ||||
| Spindle | 169 (57.3) | 96 (53.6) | 28 (36.4) | |
| Non-spindle | 126 (42.7) | 83 (46.4) | 49 (63.6) | |
| 0.020 | ||||
| No | 282 (95.6) | 159 (88.8) | 71 (92.2) | |
| Yes | 13 (4.4) | 20 (11.2) | 6 (7.8) | |
| <0.001 | ||||
| T1 | 16 (5.4) | 28 (15.6) | 0 (0.0) | |
| T2 | 104 (35.3) | 49 (27.4) | 5 (6.5) | |
| T3 | 129 (43.7) | 61 (34.1) | 34 (44.2) | |
| T4 | 46 (15.6) | 41 (22.9) | 38 (49.3) | |
| <0.001 | ||||
| I | 13 (4.4) | 15 (8.4) | 0 (0.0) | |
| IIA | 91 (30.8) | 49 (27.4) | 4 (5.2) | |
| IIB | 120 (40.7) | 48 (26.8) | 29 (37.7) | |
| IIIA | 51 (17.3) | 40 (22.3) | 29 (37.7) | |
| IIIB | 20 (6.8) | 20 (11.2) | 11 (14.3) | |
| IIIC | 0 (0.0) | 6 (3.3) | 1 (1.3) | |
| IV | 0 (0.0) | 1 (0.6) | 3 (3.9) | |
| <0.001 | ||||
| A | 239 (81.0) | 105 (58.7) | 56 (72.7) | |
| B | 43 (14.6) | 54 (30.2) | 15 (19.5) | |
| C | 11 (3.7) | 11 (6.1) | 3 (3.8) | |
| D | 2 (0.6) | 6 (3.4) | 2 (2.6) | |
| E | 0 (0.0) | 3 (1.7) | 1 (1.3) | |
*Extent of the disease: A: without ciliary body involvement and extraocular extension; B: with ciliary body involvement; C: without ciliary body involvement but with extraocular extension ≤ 5 mm in diameter; D: with ciliary body involvement and extraocular extension ≤ 5 mm in diameter; E: Any tumor size category with extraocular extension > 5 mm in diameter.
Figure 1Flow chart of the inclusion and exclusion criteria for the training and validation cohorts. (A) Training cohort; (B) TCGA validation cohort; (C) SEER validation cohort. *Patients with the 7th edition of the TNM classification were diagnosed between 2010 and 2015 in the SEER database.
Figure 2The overall survival curves for the training and validation cohorts.
Cox multivariate regression analysis of the prediction model in the training cohort.
| Variables | Model I | P value | Model II | |||||
|---|---|---|---|---|---|---|---|---|
| β | Se | HR (95% CI) | β | Se | HR (95% CI) | P value | ||
| Age | 0.018 | 0.009 | 1.02 (1.00,1.04) | 0.053 | 0.017 | 0.009 | 1.02 (1.00,1.04) | 0.075 |
| Largest basal diameter | 0.109 | 0.036 | 1.15 (1.04,1.20) | 0.002 | ||||
| Ciliary body involvement | 0.699 | 0.320 | 2.01 (1.07,3.77) | 0.029 | 0.676 | 0.333 | 1.97 (1.02,3.78) | 0.042 |
| Non-spindle cell type | 0.806 | 0.286 | 2.24 (1.28,3.92) | 0.005 | 0.888 | 0.283 | 2.43 (1.40,4.23) | 0.002 |
| Extra-scleral extension | 1.453 | 0.421 | 4.28 (1.87,9.76) | <0.001 | 1.693 | 0.437 | 5.44 (2.31,12.80) | <0.001 |
| Tumor size categories | ||||||||
| 1 | – | – | 1.00 | – | ||||
| 2 | 0.329 | 0.759 | 1.39 (0.31,6.14) | 0.664 | ||||
| 3 | 0.842 | 0.743 | 2.32 (0.54,9.95) | 0.257 | ||||
| 4 | 1.343 | 0.756 | 3.83 (0.87,16.87) | 0.076 | ||||
Figure 3The nomogram for the overall survival of patients in the training cohort (Model II).
Internal and external validations of the prediction models.
| Discrimination | TNM stage | Model I | Model II | |
|---|---|---|---|---|
| C-index (95% CI) | Training cohort | 0.652 (0.580,0.725) | 0.730 (0.660,0.800) | 0.737 (0.672,0.801) |
| Internal Validation (Bootstrap) | 0.643 (0.570,0.716) | 0.726 (0.657,0.795) | 0.730 (0.661,0.793) | |
| External Validation: TCGA | 0.632 (0.480,0.783) | NA | 0.747 (0.622,0.872) | |
| External Validation: SEER | 0.705 (0.615,0.794) | NA | 0.798 (0.721,0.875) | |
| 3-year AUC (95% CI) | Training cohort | 0.681 (0.580,0.782) | 0.763 (0.670,0.857) | 0.772 (0.684,0.859) |
| Internal Validation (Bootstrap) | 0.672 (0.556,0.737) | 0.756 (0.664,0.850) | 0.767 (0.679,0.853) | |
| External Validation: TCGA | 0.615 (0.444,0.787) | NA | 0.800 (0.669,0.931) | |
| External Validation: SEER | 0.682 (0.574,0.790) | NA | 0.795 (0.706,0.884) | |
| 5-year AUC (95% CI) | Training cohort | 0.663 (0.572,0.755) | 0.746 (0.650,0.841) | 0.747 (0.655,0.839) |
| Internal Validation (Bootstrap) | 0.655 (0.566,0.747) | 0.741 (0.645,0.835) | 0.742 (0.650,0.833) | |
| External Validation: TCGA | 0.700 (0.409,0.961) | NA | 0.770 (0.475,0.941) | |
| External Validation: SEER | 0.784 (0.694,0.882) | NA | 0.891 (0.822,0.961) | |
| 3-year Brier score (95% CI) | Training cohort | 0.087 (0.055,0.152) | 0.079 (0.049,0142) | 0.082 (0.053,0.111) |
| Internal Validation (Bootstrap) | 0.090 (0.070,0.161) | 0.082 (0.054,0150) | 0.095 (0.064,0.158) | |
| External Validation: TCGA | 0.175 (0.118,0.311) | NA | 0.114 (0.097,0.168) | |
| External Validation: SEER | 0.126 (0.071,0.161) | NA | 0.092 (0.062,0.121) | |
| 5-year Brier score (95% CI) | Training cohort | 0.121 (0.085,0.174) | 0.119 (0.086,0152) | 0.123 (0.090,0.157) |
| Internal Validation (Bootstrap) | 0.125 (0.084,0.180) | 0.120 (0.087,0154) | 0.129 (0.092,0.167) | |
| External Validation: TCGA | 0.193 (0.127,0.355) | NA | 0.167 (0.110,0.189) | |
| External Validation: SEER | 0.137 (0.077,0.169) | NA | 0.104 (0.075,0.149) |
NA, not available.
Figure 4ROC curves for the training cohort. (A) The 3-, 5-, and 10-year ROC curves of the training cohort; (B) ROC curves of Nomogram Model I, Model II and the TNM staging system for the training cohort.
Figure 5Calibration curves of Model II for the training and validation cohorts. Nomogram-predicted OS is plotted on the x-axis; actual OS is plotted on the y-axis. A plot along the 45° line indicates a perfect calibration model in which the predicted OS is identical to the actual outcomes. (A–C) The 3-, 5-, and 10-year calibration curves for the training cohort; (D) The 3-year calibration curve for the TCGA validation cohort; (E) The 3-year calibration curve for the SEER validation cohort.
Figure 6Decision curve analysis (DCA) curves with net benefit score on the vertical axis and high risk thresholds on the horizontal axis for the training and validation cohorts. The net benefit is determined by calculating the difference between the expected benefit and the expected harm associated with each prediction model. The gray line denotes the assumption that all patients had outcome events (death) during follow-up. The dark black line represents the assumption that no patients had outcome events (death) during follow-up. Other curves represent different prediction models. The curve with the highest benefit score at that threshold is the best choice (17). (A) Training cohort; (B) TCGA validation cohort; (C) SEER validation cohort.
Figure 7Risk group stratification of the training and validation cohorts by the cutoff value of 170. (A) Training cohort; (B) TCGA validation cohort; (C) SEER validation cohort.
Prognostic prediction models for uveal melanoma.
| Prognosis models | Variables | Data resource/n | Access method | Main outcome | Risk stratification | Validation |
|---|---|---|---|---|---|---|
| TNM staging system | Tumor location, LBTD, thickness, extraocular extension, lymph glands, distant metastasis | American Joint Committee on Cancer | Staging Form | Stage and Grouping | I, IIA, IIB, IIIA, IIIB, IIIC, IV | Multiple centers |
| Gene expression profile ( | Gene expression profile; | NA/25; | Commercial: DecisionDx-UM test | Class 1A, Class 1B, Class 2 | Class 1A, Class 1B, Class 2 | Multiple centers |
| The Cancer Genome Atlas Classification ( | Chr3, Chr8 | TCGA database/80 | TCGA Class Table | Class A, B, C, D | Class A, B, C, D | Multiple centers |
| LUMPO (LUMPO3) ( | Clinical: age, sex, LBTD, thickness, anterior margin, extraocular extension | Mainland Britain/3658 | Online | All-cause mortality | No | Multiple centers |
| Artificial neural network ( | Demographics, LBTD, thickness, internal reflectivity by ultrasonography, regularity, vascularity, extra-scleral extension, liver function, liver imaging | Israel/153 | 5-year mortality | No | No | |
| Nomogram-SEER ( | Age, histological type, T stage, M stage | SEER database/588 (training cohort) and 251 (validation cohort) | Nomogram model table | 1-, 3-, and 5-year cause-specific survival | Low-risk, high-risk | Internal validation, no external validation |
| Parsimonious model ( | LBTD, Chr3 | England, Scotland, and | Risk Table | 2-, 5-, and 10-year metastatic mortality | No | No |
| Markov multistate model ( | Age, sex, anterior margin position, LBTD, thickness, extraocular extension, cell type, closed loops, mitotic count, Chr3, Chr8 | England, Scotland and | 2- and 5-year metastatic death survival | No | No |
LBTD, largest basal tumor diameter; Chr3, chromosome 3 status; Chr8, chromosome 8 status; NA, not available.