| Literature DB >> 35719727 |
Hyeryeong Lee1, Eun Mi Lee1, Stacy Simai Reginald1, In Seop Chang2.
Abstract
Here, we present a protocol for constructing direct electron transfer (DET)-based enzyme-electrodes using gold-binding peptide (GBP). We describe fusion of four GBPs to flavin adenine dinucleotide (FAD)-dependent glucose dehydrogenase gamma-alpha complex (GDHγα), as model oxidoreductase, to generate four GDHγα variants. We then detail the measurements of catalytic and bioelectrochemical properties of these GDHγα variants on electrode together with surface morphology of GDHγα variants immobilized on gold surface. This protocol is useful for construction and validation of enzyme-based electrocatalytic system. For complete details on the use and execution of this protocol, please refer to Lee et al. (2021).Entities:
Keywords: Atomic Force Microscopy (AFM); Biophysics; Biotechnology and bioengineering; Material sciences; Microscopy; Molecular Biology; Protein Biochemistry; Protein expression and purification
Mesh:
Substances:
Year: 2022 PMID: 35719727 PMCID: PMC9204793 DOI: 10.1016/j.xpro.2022.101466
Source DB: PubMed Journal: STAR Protoc ISSN: 2666-1667
Figure 1AFM images for bare Au surface used for enzyme binding studies
(A and B) (A) Image in 2-D topography; (B) image in 3-D topography; scanned area is 1 μm × 1 μm.
Figure 2AFM images of enzyme-immobilized gold surface
(A and B) (A) wild-type GDHγα, and (B) GBP-fused GDHγα immobilized on gold substrates. 5 mm × 5 mm of gold substrate were immersed in 0.1 μM of each protein for 2 h, for formation of enzymatic biofilm; scanned area is 1 μm × 1 μm: (upper panel) 3-D topography; (middle panel) 2-D topography; (lower panel) cross-sectional profile along the arrow in middle panel.
Figure 3CV profiles of enzyme-modified SPGEs
(A–C) CV profiles at (A) wild-type GDHγα/SPGE, (B) MGBP-fused GDHγα/SPGE, and (C) TGBP-fused GDHγα/SPGE in the absence and presence of 100 mM glucose in PBS buffer (pH 7.4) (scan rate: 100 mV/s); inserted graph in (A): CV graphs of the selected region in the figures.
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| DH5α Chemically Competent | (Enzynomics, | CP010 |
| Rosetta (DE3) Chemically Competent | (Enzynomics, | CP1010 |
| pET21a (+) plasmid encoding GDHγα of | ( | (Available upon request) |
| Q5® Hot Start High-Fidelity 2× Master Mix | New England Biolabs (Ipswich, MA, USA) | M0494S |
| KLD enzyme mix | New England Biolabs (Ipswich, MA, USA) | M0554S |
| Expin™ PCR SV | GeneAll (Seoul, South Korea) | 103-150 |
| Tryptone | Sigma-Aldrich (St. Louis, MO) | T9410 |
| Yeast extract | BD Difco, USA | 212750 |
| SOC medium | New England Biolabs (Ipswich, MA, USA) | B9020 |
| 2,6-dichloroindophenol | Sigma-Aldrich (St. Louis, MO) | D1878 |
| Phenazine methosulfate | Sigma-Aldrich (St. Louis, MO) | P9625 |
| TEV protease and 10× TEV Protease Reaction Buffer | New England Biolabs (Ipswich, MA, USA) | P8112S |
| Ni-NTA Agarose | QIAGEN (Hilden, Germany) | 30210 |
| Ampicillin sodium salt | Sigma-Aldrich (St. Louis, MO) | A9518-5G |
| IPTG | GoldBio | 367-93-1 |
| Gold-coated silicon wafer | Sigma-Aldrich (St. Louis, MO) | 643262 |
| Hydrogen Peroxide Solution 30% | Sigma-Aldrich (St. Louis, MO) | 7722-84-1 |
| Sulfuric acid | Sigma-Aldrich (St. Louis, MO) | 258105-2.5L |
| Urea | Junsei, Japan | 57-13-6 |
| Imidazole | Sigma-Aldrich (St. Louis, MO) | 56750 |
| 99.9% nitrogen gas | Sinil Gas, Korea | N/A |
| LGBP_Forward: GCCGCCGTCTCGTCTGCCGTCTTGATTTT | This study | N/A |
| LGBP_Reverse: AGGTGAGCTTTCAGGCCGCCACCACCG | This study | N/A |
| MGBP_Forward CAACCTCGGGCACGATCCAAAGTTGAC | This study | N/A |
| MGBP_Reverse: CTTGTGTCTTACCGTGCATCCCGCCCC | This study | N/A |
| TGBP_Forward: ATTGCTACTCCGGGTGTGTAGCTGAAA | This study | N/A |
| TGBP_Reverse: CAGTACGGACGTACCAGTGCCGCCACC | This study | N/A |
| VGBP_Forward: TCCCCGGATAGCTAGCTGAAAG | This study | N/A |
| VGBP_Reverse: GCTACCGCTTACGCCGCCACCACCGCC | This study | N/A |
| XEI software | Park Systems | |
| Nova 1.11 | Metrohm Autolab | |
| 0.45-μm syringe filter | ADVANTEC, Japan | 25cs045as |
| Amicon Ultra-15 30K filter | Millipore, USA | UFC903024 |
| 96-well plate | SPL Life Sciences, Korea | 30096 |
| Screen-printed gold electrode | DropSens, Spain | 250AT |
| 125-μm Si/Al-coated cantilevers, PPP-NCHR 10 M | Park Systems, Korea | 610-1051 |
| AFM instrument, XE-100 | Park Systems, Langen, Germany | N/A |
| Cuvette | ratiolab, Dreieich, Germany | 2712120 |
| potentiostat | Metrohm Autolab BV, Netherlands | N/A |
Set of primers used for genetic GBP linkage
| Type of GBPs | Primer | Sequence (5′– 3′) |
|---|---|---|
| LGBP | LGBP_Forward | GCCGCCGTCTCGTCTGCCGTCTTGATTTTAGGGGCGCAAAGGAGAAG |
| LGBP_Reverse | AGGTGAGCTTTCAGGCCGCCACCACCGCCGACTT | |
| MGBP | MGBP_Forward | CAACCTCGGGCACGATCCAAAGTTGACCATGGCCAACACTTGT |
| MGBP_Reverse | CTTGTGTCTTACCGTGCATCCCGCCCCCCCCGCCGACTT | |
| TGBP | TGBP_Forward | ATTGCTACTCCGGGTGTGTAGCTGAAAGCTCA |
| TGBP_Reverse | CAGTACGGACGTACCAGTGCCGCCACCACCGCCGACTTCCTT | |
| VGBP | VGBP_Forward | TCCCCGGATAGCTAGCTGAAAG |
| VGBP_Reverse | GCTACCGCTTACGCCGCCACCACCGCCGACTTCCTT |
PCR reaction master mix
| Reagent | Amount |
|---|---|
| Q5 High-Fidelity 2× Master Mix | 12.5 μL |
| 10 μM Forward Primer | 1.25 μL |
| 10 μM Reverse Primer | 1.25 μL |
| Template DNA | 1 μL (30 ng) |
| Nuclease-Free Water | 9 μL |
Store the reagents at 4°C, for 1 year.
PCR cycling conditions
| Steps | Temperature | Time | Cycles |
|---|---|---|---|
| Initial Denaturation | 98°C | 30 s | 1 |
| Denaturation | 98°C | 10 s | 27 cycles |
| Annealing | 75°C | 30 s | |
| Extension | 72°C | 4 min 30 s | |
| Final extension | 72°C | 2 min | 1 |
| Hold | 4°C | forever | |
KLD enzyme mix reaction
| Reagent | Amount |
|---|---|
| PCR Product | 1 μL (100 ng) |
| KLD Reaction Buffer (2×) | 5 μL |
| KLD Enzyme Mix (10×) | 1 μL |
| Nuclease-Free Water | 3 μL |
Store the reagents at 4°C, for 1 year.
LB medium
| Reagent | Amount |
|---|---|
| Tryptone | 10 g |
| Yeast extract | 5 g |
| NaCl | 10 g |
| H2O | ∼ 1 L |
Store the solution at room temperature after sterilization. Use it within 1 year.
TB medium
| Reagent | Amount |
|---|---|
| Tryptone | 20 g |
| Yeast extract | 24 g |
| Glycerol | 4 mL |
| 1 M Phosphate buffer (0.17 M KH2PO4, 0.72 M K2HPO4) | 100 mL |
| H2O | ∼ 1 L |
Store the solution at room temperature after sterilization. Use it within 1 year.
1 M phosphate buffer
| Reagent | Amount | Final concentration |
|---|---|---|
| K2HPO4 (174.18 g/mol) | 125.41 g | 0.72 M |
| KH2PO4 (136.09 g/mol) | 23.14 g | 0.17 M |
| H2O | ∼ 1 L | N/A |
| N/A |
Store the solution at room temperature after sterilization. Use it within 1 year.
Buffer A, pH 7.4
| Reagent | Amount | Final concentration |
|---|---|---|
| Na2HPO4 (141.96 g/mol) | 2.14 g | 15.08 mM |
| NaH2PO4 (119.98 g/mol) | 0.59 g | 4.92 mM |
| NaCl (58.44 g/mol) | 29.22 g | 500 mM |
| H2O | ∼ 1 L | N/A |
| N/A |
Store the solution at room temperature after sterilization. Use it within 1 year.
Buffer A500, pH 7.4
| Reagent | Amount | Final concentration |
|---|---|---|
| Na2HPO4 (141.96 g/mol) | 2.14 g | 15.08 mM |
| NaH2PO4 (119.98 g/mol) | 0.59 g | 4.92 mM |
| NaCl (58.44 g/mol) | 29.22 g | 500 mM |
| Imidazole (68.08 g/mol) | 34.04 | 500 mM |
| H2O | ∼ 1 L | N/A |
| N/A |
Store the solution at room temperature after sterilization. Use it within 1 year.
Buffer An (n=imidazole content in mM), pH 7.4
| Solution | Volume for buffer An | ||
|---|---|---|---|
| n=50 | n=70 | n=350 | |
| Buffer A | 90 mL | 86 mL | 30 mL |
| Buffer A500 | 10 mL | 14 mL | 70 mL |
Store the prepared mixture at 4°C. Use it within 1 week.
Phosphate buffered saline (PBS), pH 7.4
| Reagent | Amount | Final concentration |
|---|---|---|
| Na2HPO4 (141.96 g/mol) | 1.42 g | 0.01 M |
| KH2PO4 (136.09 g/mol) | 0.245 g | 0.0018 M |
| NaCl (58.44 g/mol) | 8 g | 0.137 M |
| KCl | 0.2 g | 0.0027 M |
| H2O | ∼ 1 L | N/A |
| N/A |
Store the solution at room temperature after sterilization. Use it within 1 year.
10 mM potassium phosphate buffer, pH 7.4
| Reagent | Amount | Final concentration |
|---|---|---|
| K2HPO4 (174.18 g/mol) | 1.212 g | 6.958 mM |
| KH2PO4 (136.09 g/mol) | 0.414 g | 3.042 mM |
| H2O | ∼ 1 L | N/A |
| N/A |
Store the solution at room temperature after sterilization. Use it within 1 year.
DCIP mixture
| Reagent | Amount |
|---|---|
| 50 mM Dichlorophenolindophenol (DCIP) | 2 μL |
| 60 mM Phenazine methosulfate (PMS) | 20 μL |
| 100 mM potassium phosphate buffer (pH 7.4) | 20 μL |
| H2O | 18 μL |