Literature DB >> 35719130

Dissecting cellular diversity of cortical GABAergic cells across multiple modalities: A turning point in neuronal taxonomy.

Paola Arlotta1, Fei Chen2, Simona Lodato3, Troy W Margrie4, Tomasz J Nowakowski5, Thoru Pederson6, Beatriz Rico7.   

Abstract

Decoding the complexity of the brain requires an understanding of the architecture, function, and development of its neuronal circuits. Neuronal classifications that group neurons based on specific features/behaviors have become essential to further analyze the different subtypes in a systematic and reproducible way. A comprehensive taxonomic framework, accounting for multiple defining and quantitative features, will provide the reference to infer generalized rules for cells ascribed to the same neuronal type, and eventually predict cellular behaviors, even in the absence of experimental measures. Technologies that enable cell-type classification in the nervous system are rapidly evolving in scalability and resolution. While these approaches depict astonishing diversity in neuronal morphology, electrophysiology, and gene expression, a robust metric of the coherence between different profiling modalities leading to a unified classification is still largely missing. Focusing on GABAergic neurons of the cerebral cortex, Gouwens et al.1 pioneered the first integrated cell-type classification based on the simultaneous analysis of the transcriptional networks, the recording of intrinsic electrophysiological properties, and the reconstruction of 3D morphologies of the same cell. Their comprehensive and high-quality data provide a new framework to shed light on what may be considered a "neuronal cell type." Copyright:
© 2022 Faculty Opinions Ltd.

Entities:  

Keywords:  GABAergic cells; cellular diversity; classification; neuronal taxonomy

Year:  2022        PMID: 35719130      PMCID: PMC9190211          DOI: 10.12703/r-01-000009

Source DB:  PubMed          Journal:  Fac Rev        ISSN: 2732-432X


  12 in total

Review 1.  The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.

Authors:  Joseph R Ecker; Daniel H Geschwind; Arnold R Kriegstein; John Ngai; Pavel Osten; Damon Polioudakis; Aviv Regev; Nenad Sestan; Ian R Wickersham; Hongkui Zeng
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

2.  Consistent cross-modal identification of cortical neurons with coupled autoencoders.

Authors:  Rohan Gala; Agata Budzillo; Fahimeh Baftizadeh; Jeremy Miller; Nathan Gouwens; Anton Arkhipov; Gabe Murphy; Bosiljka Tasic; Hongkui Zeng; Michael Hawrylycz; Uygar Sümbül
Journal:  Nat Comput Sci       Date:  2021-02-22

3.  Temporal controls over inter-areal cortical projection neuron fate diversity.

Authors:  Ugo Tomasello; Julien Prados; Esther Klingler; Justus M Kebschull; Alessandro Contestabile; Gregorio L Galiñanes; Sabine Fièvre; Antonio Santinha; Randall Platt; Daniel Huber; Alexandre Dayer; Camilla Bellone; Denis Jabaudon
Journal:  Nature       Date:  2021-11-09       Impact factor: 49.962

4.  A multimodal cell census and atlas of the mammalian primary motor cortex.

Authors: 
Journal:  Nature       Date:  2021-10-06       Impact factor: 69.504

5.  Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells.

Authors:  Nathan W Gouwens; Staci A Sorensen; Fahimeh Baftizadeh; Agata Budzillo; Brian R Lee; Tim Jarsky; Lauren Alfiler; Katherine Baker; Eliza Barkan; Kyla Berry; Darren Bertagnolli; Kris Bickley; Jasmine Bomben; Thomas Braun; Krissy Brouner; Tamara Casper; Kirsten Crichton; Tanya L Daigle; Rachel Dalley; Rebecca A de Frates; Nick Dee; Tsega Desta; Samuel Dingman Lee; Nadezhda Dotson; Tom Egdorf; Lauren Ellingwood; Rachel Enstrom; Luke Esposito; Colin Farrell; David Feng; Olivia Fong; Rohan Gala; Clare Gamlin; Amanda Gary; Alexandra Glandon; Jeff Goldy; Melissa Gorham; Lucas Graybuck; Hong Gu; Kristen Hadley; Michael J Hawrylycz; Alex M Henry; DiJon Hill; Madie Hupp; Sara Kebede; Tae Kyung Kim; Lisa Kim; Matthew Kroll; Changkyu Lee; Katherine E Link; Matthew Mallory; Rusty Mann; Michelle Maxwell; Medea McGraw; Delissa McMillen; Alice Mukora; Lindsay Ng; Lydia Ng; Kiet Ngo; Philip R Nicovich; Aaron Oldre; Daniel Park; Hanchuan Peng; Osnat Penn; Thanh Pham; Alice Pom; Zoran Popović; Lydia Potekhina; Ramkumar Rajanbabu; Shea Ransford; David Reid; Christine Rimorin; Miranda Robertson; Kara Ronellenfitch; Augustin Ruiz; David Sandman; Kimberly Smith; Josef Sulc; Susan M Sunkin; Aaron Szafer; Michael Tieu; Amy Torkelson; Jessica Trinh; Herman Tung; Wayne Wakeman; Katelyn Ward; Grace Williams; Zhi Zhou; Jonathan T Ting; Anton Arkhipov; Uygar Sümbül; Ed S Lein; Christof Koch; Zizhen Yao; Bosiljka Tasic; Jim Berg; Gabe J Murphy; Hongkui Zeng
Journal:  Cell       Date:  2020-11-12       Impact factor: 41.582

6.  A biophysical signature of network affiliation and sensory processing in mitral cells.

Authors:  Kamilla Angelo; Ede A Rancz; Diogo Pimentel; Christian Hundahl; Jens Hannibal; Alexander Fleischmann; Bruno Pichler; Troy W Margrie
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

7.  Single-cell epigenomics reveals mechanisms of human cortical development.

Authors:  Ryan S Ziffra; Chang N Kim; Jayden M Ross; Amy Wilfert; Tychele N Turner; Maximilian Haeussler; Alex M Casella; Pawel F Przytycki; Kathleen C Keough; David Shin; Derek Bogdanoff; Anat Kreimer; Katherine S Pollard; Seth A Ament; Evan E Eichler; Nadav Ahituv; Tomasz J Nowakowski
Journal:  Nature       Date:  2021-10-06       Impact factor: 69.504

8.  Molecular logic of cellular diversification in the mouse cerebral cortex.

Authors:  Daniela J Di Bella; Ehsan Habibi; Robert R Stickels; Gabriele Scalia; Juliana Brown; Payman Yadollahpour; Sung Min Yang; Catherine Abbate; Tommaso Biancalani; Evan Z Macosko; Fei Chen; Aviv Regev; Paola Arlotta
Journal:  Nature       Date:  2021-06-23       Impact factor: 49.962

9.  Conserved cell types with divergent features in human versus mouse cortex.

Authors:  Rebecca D Hodge; Trygve E Bakken; Jeremy A Miller; Kimberly A Smith; Eliza R Barkan; Lucas T Graybuck; Jennie L Close; Brian Long; Nelson Johansen; Osnat Penn; Zizhen Yao; Jeroen Eggermont; Thomas Höllt; Boaz P Levi; Soraya I Shehata; Brian Aevermann; Allison Beller; Darren Bertagnolli; Krissy Brouner; Tamara Casper; Charles Cobbs; Rachel Dalley; Nick Dee; Song-Lin Ding; Richard G Ellenbogen; Olivia Fong; Emma Garren; Jeff Goldy; Ryder P Gwinn; Daniel Hirschstein; C Dirk Keene; Mohamed Keshk; Andrew L Ko; Kanan Lathia; Ahmed Mahfouz; Zoe Maltzer; Medea McGraw; Thuc Nghi Nguyen; Julie Nyhus; Jeffrey G Ojemann; Aaron Oldre; Sheana Parry; Shannon Reynolds; Christine Rimorin; Nadiya V Shapovalova; Saroja Somasundaram; Aaron Szafer; Elliot R Thomsen; Michael Tieu; Gerald Quon; Richard H Scheuermann; Rafael Yuste; Susan M Sunkin; Boudewijn Lelieveldt; David Feng; Lydia Ng; Amy Bernard; Michael Hawrylycz; John W Phillips; Bosiljka Tasic; Hongkui Zeng; Allan R Jones; Christof Koch; Ed S Lein
Journal:  Nature       Date:  2019-08-21       Impact factor: 49.962

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