Literature DB >> 35717799

A lifelong duty: how Xist maintains the inactive X chromosome.

Elsie C Jacobson1, Amy Pandya-Jones2, Kathrin Plath3.   

Abstract

Female eutherians transcriptionally silence one X chromosome to balance gene dosage between the sexes. X-chromosome inactivation (XCI) is initiated by the lncRNA Xist, which assembles many proteins within the inactive X chromosome (Xi) to trigger gene silencing and heterochromatin formation. It is well established that gene silencing on the Xi is maintained through repressive epigenetic processes, including histone deacetylation and DNA methylation. Recent studies revealed a new mechanism where RNA-binding proteins that interact directly with the RNA contribute to the maintenance of Xist localization and gene silencing. In addition, a surprising plasticity of the Xi was uncovered with many genes becoming upregulated upon experimental deletion of Xist. Intriguingly, immune cells normally lose Xist from the Xi, suggesting that thisXist dependence is utilized in vivo to dynamically regulate gene expression from the Xi. These new studies expose fundamental regulatory mechanisms for the chromatin association of RNAs, highlight the need for studying the maintenance of XCI and Xist localization in a gene- and cell-type-specific manner, and are likely to have clinical impact.
Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights reserved.

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Year:  2022        PMID: 35717799      PMCID: PMC9472561          DOI: 10.1016/j.gde.2022.101927

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   4.665


  87 in total

1.  SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X.

Authors:  Chen-Yu Wang; Teddy Jégu; Hsueh-Ping Chu; Hyun Jung Oh; Jeannie T Lee
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

2.  Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence.

Authors:  T B Nesterova; S Y Slobodyanyuk; E A Elisaphenko; A I Shevchenko; C Johnston; M E Pavlova; I B Rogozin; N N Kolesnikov; N Brockdorff; S M Zakian
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

3.  Landscape of X chromosome inactivation across human tissues.

Authors:  Taru Tukiainen; Alexandra-Chloé Villani; Angela Yen; Manuel A Rivas; Jamie L Marshall; Rahul Satija; Matt Aguirre; Laura Gauthier; Mark Fleharty; Andrew Kirby; Beryl B Cummings; Stephane E Castel; Konrad J Karczewski; François Aguet; Andrea Byrnes; Tuuli Lappalainen; Aviv Regev; Kristin G Ardlie; Nir Hacohen; Daniel G MacArthur
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

4.  A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase.

Authors:  Alissa Minkovsky; Anna Sahakyan; Giancarlo Bonora; Robert Damoiseaux; Elizabeth Dimitrova; Liudmilla Rubbi; Matteo Pellegrini; Caius G Radu; Kathrin Plath
Journal:  Epigenetics Chromatin       Date:  2015-10-13       Impact factor: 4.954

Review 5.  X Inactivation and Escape: Epigenetic and Structural Features.

Authors:  He Fang; Christine M Disteche; Joel B Berletch
Journal:  Front Cell Dev Biol       Date:  2019-10-01

6.  Female human primordial germ cells display X-chromosome dosage compensation despite the absence of X-inactivation.

Authors:  Tsotne Chitiashvili; Iris Dror; Rachel Kim; Fei-Man Hsu; Rohan Chaudhari; Erica Pandolfi; Di Chen; Simone Liebscher; Katja Schenke-Layland; Kathrin Plath; Amander Clark
Journal:  Nat Cell Biol       Date:  2020-11-30       Impact factor: 28.824

7.  Time-resolved structured illumination microscopy reveals key principles of Xist RNA spreading.

Authors:  Lisa Rodermund; Heather Coker; Roel Oldenkamp; Guifeng Wei; Joseph Bowness; Bramman Rajkumar; Tatyana Nesterova; David Miguel Susano Pinto; Lothar Schermelleh; Neil Brockdorff
Journal:  Science       Date:  2021-06-11       Impact factor: 63.714

8.  Cell division requires RNA eviction from condensing chromosomes.

Authors:  Judith A Sharp; Carlos Perea-Resa; Wei Wang; Michael D Blower
Journal:  J Cell Biol       Date:  2020-11-02       Impact factor: 10.539

9.  Inferring genes that escape X-Chromosome inactivation reveals important contribution of variable escape genes to sex-biased diseases.

Authors:  Renan Sauteraud; Jill M Stahl; Jesica James; Marisa Englebright; Fang Chen; Xiaowei Zhan; Laura Carrel; Dajiang J Liu
Journal:  Genome Res       Date:  2021-08-23       Impact factor: 9.043

10.  Contiguous erosion of the inactive X in human pluripotency concludes with global DNA hypomethylation.

Authors:  Prakhar Bansal; Darcy T Ahern; Yuvabharath Kondaveeti; Catherine W Qiu; Stefan F Pinter
Journal:  Cell Rep       Date:  2021-06-08       Impact factor: 9.423

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