| Literature DB >> 35715756 |
Fatemeh Farshadpour1, Reza Taherkhani2, Fatemeh Saberi1.
Abstract
BACKGROUND: This study was designed to evaluate the prevalence, genotypic patterns, and predominant mutations of hepatitis B virus (HBV) infection among diabetic patients.Entities:
Keywords: Basal core promoter mutations; Diabetes mellitus; Genotype; Hepatitis B virus; Iran; Pre-core mutations; Prevalence; S mutations
Mesh:
Substances:
Year: 2022 PMID: 35715756 PMCID: PMC9206294 DOI: 10.1186/s12879-022-07528-7
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.667
Sequences of primers for detection of HBV genotypes and mutations
| Virus | Primers name | Sequences of Primers 5′ → 3′ | Gene | Region in genome | Annealing temperature | Size | References |
|---|---|---|---|---|---|---|---|
| HBV | 244-HBS-F1 | GAGTCTAGACTCGTGGTGGACTTC | S | 244–267 | 56 ℃ | 447 bp | [ |
| 691-HBS-R1 | AAATKGCACTAGTAAACTGAGCCA | 668–691 | |||||
| 255-HBS-F2 | CGTGGTGGACTTCTCTCAATTTTC | 255–278 | 56 ℃ | 416 bp | |||
| 671-HBS-R2 | GCCARGAGAAACGGRCTGAGGCCC | 648–671 | |||||
| HBV | 1606-pre-C-F1 | GCATGGAGACCACCGTGAAC | X and pre-core regions | 1606–1625 | 57 ℃ | 789 bp | [ |
| 2395-pre-C-R1 | AGGCGAGGGAGTTCTTCTTC | 2376–2395 | |||||
| 1653-pre-C-F2 | CATAAGAGGACTCTTGGACT | 1653–1672 | 55 ℃ | 740 bp | |||
| 2393-pre-C-R2 | GCGAGGGAGTTCTTCTTC | 2376–2393 |
Comparisons between HBsAg-seropositive and HBsAg-seronegative diabetic patients according to age and biochemical measurements
| Means ± SD of all diabetic participants (733) | Means ± SD of HBsAg negative subjects (705) | Means ± SD of anti- HBsAg positive subjects (28) | ||
|---|---|---|---|---|
| Age (year) | 55.1937 ± 11.74690 | 55.0057 ± 11.65605 | 59.9286 ± 13.20474 | 0.03 |
| FBS mg/dL | 170.5730 ± 72.25192 | 171.1504 ± 72.59905 | 156.0357 ± 62.24770 | 0.28 |
| Chol mg/dL | 197.7640 ± 53.02186 | 198.3730 ± 53.09670 | 182.4286 ± 49.54566 | 0.12 |
| TG mg/dL | 192.2128 ± 86.48698 | 193.2610 ± 87.14868 | 165.8214 ± 63.32693 | 0.1 |
| ALT IU/L | 31.5375 ± 21.55816 | 31.2979 ± 21.29852 | 37.5714 ± 27.07114 | 0.13 |
| AST IU/L | 24.8554 ± 13.89916 | 24.7319 ± 13.90054 | 27.9643 ± 13.74498 | 0.23 |
FBS fasting blood sugar; TG triglyceride; ALT alanine aminotransferase; AST aspartate aminotransferase; HBsAg hepatitis B surface antigen
Prevalence of HBV-DNA positivity according to demographic and biochemical variables among diabetic patients
| No. of all diabetic participants (%): 733 (100%) | No. of HBV DNA negative subjects (%): 714 (97.4%) | No. of HBV DNA positive subjects (%): 19 (2.6%) | Adjusted OR | ||
|---|---|---|---|---|---|
| Age groups (years) | |||||
| 26–30 | 16 (2.2%) | 16 (100.0%) | 0 (0.0%) | 1.0 | |
| 31–40 | 67 (9.1%) | 67 (100.0%) | 0 (0.0%) | 0.00 | 0.99 |
| 41–50 | 143 (19.5%) | 137 (95.8%) | 6 (4.2%) | 0.00 | 0.99 |
| 51–60 | 284 (38.7%) | 281 (98.9%) | 3 (1.1%) | 0.24 (0.06–0.99) | 0.05 |
| 61–70 | 147 (20.1%) | 141 (95.9%) | 6 (4.1%) | 3.99 (0.98–16.2) | 0.05 |
| ≥ 71 | 76 (10.4%) | 72 (94.7%) | 4 (5.3%) | 1.31 (0.36–4.77) | 0.69 |
| Gender | |||||
| Male | 256 (34.9%) | 252 (98.4%) | 4 (1.6%) | 1.0 | |
| Female | 477 (65.1%) | 462 (96.9%) | 15 (3.1%) | 2.045 (0.67–6.23) | 0.208 |
| FBS (mg/dL) | |||||
| ≤ 115 | 128 (17.5%) | 124 (96.9%) | 4 (3.1%) | 1.0 | |
| 116–125 | 89 (12.1%) | 87 (97.8%) | 2 (2.2%) | 0.8 (0.26–2.50) | 0.7 |
| ≥ 126 | 516 (70.4%) | 503 (97.5%) | 13 (2.5%) | 1.12 (0.25–5.07) | 0.88 |
| Cholesterol (mg/dL) | |||||
| ≤ 200 | 403 (55.0%) | 391 (97.0%) | 12 (3.0%) | 0.69 (0.19–2.49) | 0.57 |
| 201–240 | 186 (25.4%) | 182 (97.8%) | 4 (2.2%) | 0.97 (0.213–4.39) | 0.96 |
| ≥ 241 | 144 (19.6%) | 141 (97.9%) | 3 (2.1%) | 1.0 | |
| TG (mg/dL) | |||||
| ≤ 150 | 228 (31.1%) | 219 (96.0%) | 9 (4.0%) | 1.0 | |
| 151–200 | 239 (32.6%) | 232 (97.1%) | 7 (2.9%) | 0.278 (0.1–1.04) | 0.06 |
| ≥ 201 | 266 (36.3%) | 263 (98.9%) | 3 (1.1%) | 0.378 (0.1–1.48) | 0.16 |
| ALT levels (IU/L) | |||||
| ≤ 24 | 324 (44.2%) | 318 (98.1%) | 6 (1.9%) | 1.0 | |
| 25–40 | 256 (34.9%) | 248 (96.9%) | 8 (3.1%) | 1.71 (0.59–4.99) | 0.33 |
| 41–80 | 130 (17.7%) | 128 (98.5%) | 2 (1.5%) | 0.48 (0.10–2.31) | 0.36 |
| ≥ 81 | 23 (3.1%) | 20 (87.0%) | 3 (13.0%) | 9.60 (1.51–61.07) | 0.02 |
| AST levels (IU/L) | |||||
| ≤ 24 | 464 (63.3%) | 453 (97.6%) | 11 (2.4%) | 1.0 | |
| 25–40 | 187 (25.5%) | 182 (97.3%) | 5 (2.7%) | 0.88 (0.31–2.58) | 0.82 |
| 41–80 | 78 (10.6%) | 75 (96.2%) | 3 (3.8%) | 0.61 (0.34–2.23) | 0.45 |
| ≥ 81 | 4 (0.5%) | 4 (100.0%) | 0 (0.00%) | 0.00 | 0.99 |
HBV hepatitis B virus; FBS fasting blood sugar; TG triglyceride; ALT alanine aminotransferase; AST aspartate aminotransferase; OR odds ratio; CI confidence interval
Fig. 1Neighbor-joining phylogenetic tree based on ~ 380 bp nucleotide sequence (~ 270 to 670 bp of the complete reference genome) of the S region of HBV isolates from the serum samples of patients with type 2 diabetes mellitus (green squares) (MF419214–MF419229) and non-diabetic controls (blue triangles) (NDC1–NDC3). Bootstrap resampling strategy and reconstruction were carried out 1000 times to confirm the reliability of the phylogenetic tree
Characteristics of diabetic patients with point substitution mutations in HBsAg
| Accession no. | Patient no. | Sex (M/F) | Age (year) | S mutations | OD of HBsAg ELISA test |
|---|---|---|---|---|---|
| MF419214 | 28 | F | 69 | F93C, M125T, T127P, A168V | 3.79 |
| MF419215 | 63 | F | 61 | 0.09 | |
| MF419216 | 64 | M | 52 | M125T, T127P, A168V | 0.138 |
| MF419217 | 65 | F | 72 | 0.14 | |
| MF419218 | 66 | M | 42 | M125T, T127P, A168V | 0.14 |
| MF419219 | 69 | F | 47 | 0.15 | |
| MF419220 | 71 | F | 43 | L109P, M125T, T127P, A168V | 0.166 |
| MF419221 | 76 | F | 42 | 0.221 | |
| MF419222 | 79 | F | 47 | I92T, L94S, V96G, M125T, T127P, G159V | 1.425 |
| MF419223 | 80 | F | 60 | F85C, V96G, M125T, T127P | 3.14 |
| MF419224 | 82 | F | 96 | M125T, T127P, A168V | 3.82 |
| MF419225 | 83 | F | 66 | M125T, T127P | 3.4 |
| MF419226 | 84 | F | 42 | M125T, T127P | 3.1 |
| MF419227 | 85 | F | 73 | M125T, T127P, E164G | 2.6 |
| MF419228 | 86 | M | 75 | 0.246 | |
| MF419229 | 97 | F | 67 | I92T, L94S, V96G, M125T, T127P, G159A, W165R, A168V | 1.24 |
Characteristics of diabetic patients with point substitution mutations in the pre-C/C, BCP, and X regions of the HBV genome
| Accession No | Patient no | Sex (M/F) | Age (year) | OD HBsAg ELISA | Pre-C/C mutation | Pre-C/C nt | X mutation | BCP mutation (1742–1849) |
|---|---|---|---|---|---|---|---|---|
| OK382075 | 63 | F | 61 | 0.1 | G29D, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T |
| OK382076 | 65 | F | 72 | 0.14 | G29D, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T |
| OK382077 | 66 | M | 42 | 0.14 | G29D, S64A, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T |
| OK382078 | 69 | F | 47 | 0.15 | C7R, G29D, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T, T1832C |
| OK382079 | 71 | F | 43 | 0.166 | G29D, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T |
| OK382080 | 80 | F | 60 | 3.14 | W28*, G29D, S50A, S78T, T96I, A109T, S116G, T120S, I145L, A160P | G1896A, G1899A | I127L | A1727G, A1752C |
| OK382081 | 82 | F | 96 | 3.82 | W28*, S50T, Y67F, E93D, A109V, S116G, N121T, M122V, T143I, P164T | G1896A | I127L | A1752C, A1775C |
| OK382082 | 83 | F | 66 | 3.4 | W28*, C77G, S78T, A109T, A160G | G1896A | T1758C, C1773T, A1775G | |
| OK382083 | 84 | F | 42 | 3.1 | E69N, G103V | I127T, K130M, V131I | T1753C, A1762T, G1764A, | |
| OK382084 | 85 | F | 73 | 2.6 | V17F, W28*, G29D, S50T, F53Y, S78T, G103A, E106Q, L113Q, I145L, T176C, R180Q, P185S | G1896A, G1899A | I127L | A1752C |
| OK382085 | 86 | M | 75 | 0.246 | G29D, E93D, A109V, N121T, M122A, I145L, P159Q, P164T | G1899A | I127T, K130I, V131L | T1753C, A1762T, G1764T, C1766G, C1773T |