Literature DB >> 35710835

Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops.

Nathalie Bastié1, Christophe Chapard2, Lise Dauban1,3, Olivier Gadal1, Frédéric Beckouët4, Romain Koszul5.   

Abstract

Cohesin is a DNA translocase that is instrumental in the folding of the genome into chromatin loops, with functional consequences on DNA-related processes. Chromatin loop length and organization likely depend on cohesin processivity, translocation rate and stability on DNA. Here, we investigate and provide a comprehensive overview of the roles of various cohesin regulators in tuning chromatin loop expansion in budding yeast Saccharomyces cerevisiae. We demonstrate that Scc2, which stimulates cohesin ATPase activity, is also essential for cohesin translocation, driving loop expansion in vivo. Smc3 acetylation during the S phase counteracts this activity through the stabilization of Pds5, which finely tunes the size and stability of loops in G2.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35710835     DOI: 10.1038/s41594-022-00780-0

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   18.361


  47 in total

1.  The cohesin ring concatenates sister DNA molecules.

Authors:  Christian H Haering; Ana-Maria Farcas; Prakash Arumugam; Jean Metson; Kim Nasmyth
Journal:  Nature       Date:  2008-07-02       Impact factor: 49.962

Review 2.  The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization.

Authors:  Daniel M Ibrahim; Stefan Mundlos
Journal:  Curr Opin Genet Dev       Date:  2020-03-19       Impact factor: 5.578

3.  SMC complexes differentially compact mitotic chromosomes according to genomic context.

Authors:  Stephanie Andrea Schalbetter; Anton Goloborodko; Geoffrey Fudenberg; Jon-Matthew Belton; Catrina Miles; Miao Yu; Job Dekker; Leonid Mirny; Jonathan Baxter
Journal:  Nat Cell Biol       Date:  2017-08-21       Impact factor: 28.824

4.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

5.  Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

Authors:  Gordana Wutz; Csilla Várnai; Kota Nagasaka; David A Cisneros; Roman R Stocsits; Wen Tang; Stefan Schoenfelder; Gregor Jessberger; Matthias Muhar; M Julius Hossain; Nike Walther; Birgit Koch; Moritz Kueblbeck; Jan Ellenberg; Johannes Zuber; Peter Fraser; Jan-Michael Peters
Journal:  EMBO J       Date:  2017-12-07       Impact factor: 11.598

6.  Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners.

Authors:  Lise Dauban; Rémi Montagne; Agnès Thierry; Luciana Lazar-Stefanita; Nathalie Bastié; Olivier Gadal; Axel Cournac; Romain Koszul; Frédéric Beckouët
Journal:  Mol Cell       Date:  2020-02-06       Impact factor: 17.970

Review 7.  Organization of Chromosomal DNA by SMC Complexes.

Authors:  Stanislau Yatskevich; James Rhodes; Kim Nasmyth
Journal:  Annu Rev Genet       Date:  2019-10-02       Impact factor: 16.830

Review 8.  The 3D Genome as Moderator of Chromosomal Communication.

Authors:  Job Dekker; Leonid Mirny
Journal:  Cell       Date:  2016-03-10       Impact factor: 41.582

9.  The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension.

Authors:  Judith H I Haarhuis; Robin H van der Weide; Vincent A Blomen; J Omar Yáñez-Cuna; Mario Amendola; Marjon S van Ruiten; Peter H L Krijger; Hans Teunissen; René H Medema; Bas van Steensel; Thijn R Brummelkamp; Elzo de Wit; Benjamin D Rowland
Journal:  Cell       Date:  2017-05-04       Impact factor: 41.582

10.  Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle.

Authors:  Luciana Lazar-Stefanita; Vittore F Scolari; Guillaume Mercy; Héloise Muller; Thomas M Guérin; Agnès Thierry; Julien Mozziconacci; Romain Koszul
Journal:  EMBO J       Date:  2017-07-20       Impact factor: 11.598

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  3 in total

Review 1.  New insights into genome folding by loop extrusion from inducible degron technologies.

Authors:  Elzo de Wit; Elphège P Nora
Journal:  Nat Rev Genet       Date:  2022-09-30       Impact factor: 59.581

2.  PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome.

Authors:  Nicole L Arruda; Audra F Bryan; Jill M Dowen
Journal:  Epigenetics Chromatin       Date:  2022-08-19       Impact factor: 5.465

3.  The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism.

Authors:  Démi van Gent; Ángela Sedeño Cacciatore; Marjon S van Ruiten; Astrid Fauster; Laureen Willems; Maarten L Hekkelman; Liesbeth Hoekman; Maarten Altelaar; Judith H I Haarhuis; Thijn R Brummelkamp; Elzo de Wit; Benjamin D Rowland
Journal:  Nat Struct Mol Biol       Date:  2022-06-16       Impact factor: 18.361

  3 in total

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