Literature DB >> 35710639

Influence maximization in Boolean networks.

Thomas Parmer1, Luis M Rocha2,3, Filippo Radicchi4.   

Abstract

The optimization problem aiming at the identification of minimal sets of nodes able to drive the dynamics of Boolean networks toward desired long-term behaviors is central for some applications, as for example the detection of key therapeutic targets to control pathways in models of biological signaling and regulatory networks. Here, we develop a method to solve such an optimization problem taking inspiration from the well-studied problem of influence maximization for spreading processes in social networks. We validate the method on small gene regulatory networks whose dynamical landscapes are known by means of brute-force analysis. We then systematically study a large collection of gene regulatory networks. We find that for about 65% of the analyzed networks, the minimal driver sets contain less than 20% of their nodes.
© 2022. The Author(s).

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Year:  2022        PMID: 35710639      PMCID: PMC9203747          DOI: 10.1038/s41467-022-31066-0

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  33 in total

1.  Mean-field Boolean network model of a signal transduction network.

Authors:  Naomi Kochi; Mihaela Teodora Matache
Journal:  Biosystems       Date:  2011-12-27       Impact factor: 1.973

2.  A simple model of global cascades on random networks.

Authors:  Duncan J Watts
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

3.  Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.

Authors:  Adrien Fauré; Aurélien Naldi; Claudine Chaouiya; Denis Thieffry
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

4.  An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks.

Authors:  Jorge G T Zañudo; Réka Albert
Journal:  Chaos       Date:  2013-06       Impact factor: 3.642

5.  Influence maximization in complex networks through optimal percolation.

Authors:  Flaviano Morone; Hernán A Makse
Journal:  Nature       Date:  2015-07-01       Impact factor: 49.962

6.  Structure-based control of complex networks with nonlinear dynamics.

Authors:  Jorge Gomez Tejeda Zañudo; Gang Yang; Réka Albert
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-27       Impact factor: 11.205

7.  Uncertainty Reduction for Stochastic Processes on Complex Networks.

Authors:  Filippo Radicchi; Claudio Castellano
Journal:  Phys Rev Lett       Date:  2018-05-11       Impact factor: 9.161

8.  Network model of survival signaling in large granular lymphocyte leukemia.

Authors:  Ranran Zhang; Mithun Vinod Shah; Jun Yang; Susan B Nyland; Xin Liu; Jong K Yun; Réka Albert; Thomas P Loughran
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

9.  The Cell Collective: toward an open and collaborative approach to systems biology.

Authors:  Tomáš Helikar; Bryan Kowal; Sean McClenathan; Mitchell Bruckner; Thaine Rowley; Alex Madrahimov; Ben Wicks; Manish Shrestha; Kahani Limbu; Jim A Rogers
Journal:  BMC Syst Biol       Date:  2012-08-07

10.  Cell fate reprogramming by control of intracellular network dynamics.

Authors:  Jorge G T Zañudo; Réka Albert
Journal:  PLoS Comput Biol       Date:  2015-04-07       Impact factor: 4.475

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