Literature DB >> 35708861

Harnessing the hidden allelic diversity of wild Cicer to accelerate genomics-assisted chickpea crop improvement.

Jitendra Kumar Mohanty1, Uday Chand Jha2, G P Dixit2, Swarup K Parida3.   

Abstract

Chickpea, commonly called Bengal gram or Garbanzo bean, faces a productivity crisis around the globe due to numerous biotic and abiotic stresses. The eroded genetic base of the cultivated Cicer gene pool is becoming a significant bottleneck in developing stress-resilient chickpea cultivars. In this scenario, the crop wild relatives (CWR) of chickpea, with the useful genomic wealth of their wild adaptation, give a ray of hope to improve the genetic background of the cultivated Cicer gene pool. To extrapolate these unearthed genomic diversities of wild, we require a thorough understanding of the pre-historic domestication episodes that are changing their shape with the expansion of the available scientific evidence. Keeping aforesaid in view, the current review article provides a glimpsed overview on several efforts done so far to reveal the mysterious origin and evolution of the Cicer gene pool, along with the constraints in their utilization for chickpea crop improvement. It encapsulates various stress-resilient CWR of chickpea and their use in several pre-breeding programs to develop numerous breeding populations for crop genetic enhancement. Further, this review will recapitulate the significant contributions of structural, functional and comparative genomics, pan-genomics and diverse genomics-assisted breeding strategy in dissecting the untapped trait-specific allelic/gene diversity and domestication pattern behind the CWR of chickpea, along with their potential and promises. We expect the newly explored genetic variations may be used in the breeding programs for re-wilding the cultigens' genomic background to open a new avenue for genetic gain and crop improvement capacity of chickpea.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Chickpea; Domestication; Germplasm; Wild

Mesh:

Year:  2022        PMID: 35708861     DOI: 10.1007/s11033-022-07613-9

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.742


  55 in total

1.  Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.

Authors:  Rajeev K Varshney; Mahendar Thudi; Manish Roorkiwal; Weiming He; Hari D Upadhyaya; Wei Yang; Prasad Bajaj; Philippe Cubry; Abhishek Rathore; Jianbo Jian; Dadakhalandar Doddamani; Aamir W Khan; Vanika Garg; Annapurna Chitikineni; Dawen Xu; Pooran M Gaur; Narendra P Singh; Sushil K Chaturvedi; Gangarao V P R Nadigatla; Lakshmanan Krishnamurthy; G P Dixit; Asnake Fikre; Paul K Kimurto; Sheshshayee M Sreeman; Chellapilla Bharadwaj; Shailesh Tripathi; Jun Wang; Suk-Ha Lee; David Edwards; Kavi Kishor Bilhan Polavarapu; R Varma Penmetsa; José Crossa; Henry T Nguyen; Kadambot H M Siddique; Timothy D Colmer; Tim Sutton; Eric von Wettberg; Yves Vigouroux; Xun Xu; Xin Liu
Journal:  Nat Genet       Date:  2019-04-29       Impact factor: 38.330

2.  Genetic relationships among the annual species of Cicer L.

Authors:  G Ladizinsky; A Adler
Journal:  Theor Appl Genet       Date:  1976-07       Impact factor: 5.699

3.  Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

Authors:  Rajeev K Varshney; Chi Song; Rachit K Saxena; Sarwar Azam; Sheng Yu; Andrew G Sharpe; Steven Cannon; Jongmin Baek; Benjamin D Rosen; Bunyamin Tar'an; Teresa Millan; Xudong Zhang; Larissa D Ramsay; Aiko Iwata; Ying Wang; William Nelson; Andrew D Farmer; Pooran M Gaur; Carol Soderlund; R Varma Penmetsa; Chunyan Xu; Arvind K Bharti; Weiming He; Peter Winter; Shancen Zhao; James K Hane; Noelia Carrasquilla-Garcia; Janet A Condie; Hari D Upadhyaya; Ming-Cheng Luo; Mahendar Thudi; C L L Gowda; Narendra P Singh; Judith Lichtenzveig; Krishna K Gali; Josefa Rubio; N Nadarajan; Jaroslav Dolezel; Kailash C Bansal; Xun Xu; David Edwards; Gengyun Zhang; Guenter Kahl; Juan Gil; Karam B Singh; Swapan K Datta; Scott A Jackson; Jun Wang; Douglas R Cook
Journal:  Nat Biotechnol       Date:  2013-01-27       Impact factor: 54.908

Review 4.  Salt sensitivity in chickpea.

Authors:  Timothy J Flowers; Pooran M Gaur; C L Laxmipathi Gowda; L Krishnamurthy; Srinivasan Samineni; Kadambot H M Siddique; Neil C Turner; Vincent Vadez; Rajeev K Varshney; Timothy D Colmer
Journal:  Plant Cell Environ       Date:  2009-10-14       Impact factor: 7.228

Review 5.  Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies.

Authors:  Rajeev K Varshney; Himabindu Kudapa; Manish Roorkiwal; Mahendar Thudi; Manish K Pandey; Rachit K Saxena; Siva K Chamarthi; S Murali Mohan; Nalini Mallikarjuna; Hari Upadhyaya; Pooran M Gaur; L Krishnamurthy; K B Saxena; Shyam N Nigam; Suresh Pande
Journal:  J Biosci       Date:  2012-11       Impact factor: 1.826

6.  Future prospects for ascochyta blight resistance breeding in cool season food legumes.

Authors:  D Rubiales; S Fondevilla
Journal:  Front Plant Sci       Date:  2012-02-07       Impact factor: 5.753

7.  Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.).

Authors:  Mahendar Thudi; Annapurna Chitikineni; Xin Liu; Weiming He; Manish Roorkiwal; Wei Yang; Jianbo Jian; Dadakhalandar Doddamani; Pooran M Gaur; Abhishek Rathore; Srinivasan Samineni; Rachit K Saxena; Dawen Xu; Narendra P Singh; Sushil K Chaturvedi; Gengyun Zhang; Jun Wang; Swapan K Datta; Xun Xu; Rajeev K Varshney
Journal:  Sci Rep       Date:  2016-12-16       Impact factor: 4.379

8.  A chickpea genetic variation map based on the sequencing of 3,366 genomes.

Authors:  Rajeev K Varshney; Manish Roorkiwal; Shuai Sun; Prasad Bajaj; Annapurna Chitikineni; Mahendar Thudi; Narendra P Singh; Xiao Du; Hari D Upadhyaya; Aamir W Khan; Yue Wang; Vanika Garg; Guangyi Fan; Wallace A Cowling; José Crossa; Laurent Gentzbittel; Kai Peter Voss-Fels; Vinod Kumar Valluri; Pallavi Sinha; Vikas K Singh; Cécile Ben; Abhishek Rathore; Ramu Punna; Muneendra K Singh; Bunyamin Tar'an; Chellapilla Bharadwaj; Mohammad Yasin; Motisagar S Pithia; Servejeet Singh; Khela Ram Soren; Himabindu Kudapa; Diego Jarquín; Philippe Cubry; Lee T Hickey; Girish Prasad Dixit; Anne-Céline Thuillet; Aladdin Hamwieh; Shiv Kumar; Amit A Deokar; Sushil K Chaturvedi; Aleena Francis; Réka Howard; Debasis Chattopadhyay; David Edwards; Eric Lyons; Yves Vigouroux; Ben J Hayes; Eric von Wettberg; Swapan K Datta; Huanming Yang; Henry T Nguyen; Jian Wang; Kadambot H M Siddique; Trilochan Mohapatra; Jeffrey L Bennetzen; Xun Xu; Xin Liu
Journal:  Nature       Date:  2021-11-10       Impact factor: 49.962

9.  Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.).

Authors:  Rajeev K Varshney; Mahendar Thudi; Spurthi N Nayak; Pooran M Gaur; Junichi Kashiwagi; Lakshmanan Krishnamurthy; Deepa Jaganathan; Jahnavi Koppolu; Abhishek Bohra; Shailesh Tripathi; Abhishek Rathore; Aravind K Jukanti; Veera Jayalakshmi; Anilkumar Vemula; S J Singh; Mohammad Yasin; M S Sheshshayee; K P Viswanatha
Journal:  Theor Appl Genet       Date:  2013-12-11       Impact factor: 5.699

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