| Literature DB >> 35707741 |
Xue Lian1,2, Dakui Cao2, Xun Hu3, Weiqiang Mo2, Xiujuan Yao4, Juanfen Mo5, Haiqin Wang1,2.
Abstract
Background: Lung adenocarcinoma (LUAD) is a life-threatening disease worldwide with a high mortality rate. The early diagnosis of LUAD is crucial for improving subsequent treatment and prognosis. However, biomarkers for early detection remain a clinical challenge in LUAD. Here, we aimed to develop circular RNAs (circRNAs) in circulating plasma from LUAD patients as valuable diagnostic biomarkers in LUAD.Entities:
Keywords: circ101555; circRNAs; diagnostic biomarker; lung adenocarcinoma
Year: 2022 PMID: 35707741 PMCID: PMC9191692 DOI: 10.2147/IJGM.S367999
Source DB: PubMed Journal: Int J Gen Med ISSN: 1178-7074
Clinical Characteristics of LUAD Patients
| Characteristics | LUAD Patients (n) | Healthy Donors (n) |
|---|---|---|
| Total cases | 30 | 30 |
| Gender | ||
| Male | 16 | 15 |
| Female | 14 | 15 |
| Age (years) | ||
| ≤ 60 | 18 | 20 |
| > 60 | 12 | 10 |
| Smoking history | ||
| Yes | 14 | 11 |
| No | 16 | 19 |
| TNM stage | ||
| I | 30 |
Figure 1Differential expression levels of circRNAs in the tumour tissues and normal tissues of LUAD patients. (A) Hierarchical clustering of circRNA microarray analysis from three paired LUAD tumour tissues and matched adjacent normal tissues showed the differential expression of circRNAs (FC ≥ 1.5 and P values ≤ 0.05). (B) Volcano plots were constructed to determine the distribution of circRNAs using the fold change and P values. The left red points represent the differentially downregulated circRNAs, and significantly upregulated circRNAs are shown by right red points. (C) A scatter plot was used to assess variations in circRNA expression levels between LUAD tumour tissues and adjacent normal tissues. The values of the X and Y axes in the scatter plot are the normalized signal values of the samples (log2 scaled). The circRNAs above the top green line and below the bottom green line were changed by more than 1.5-fold between the two compared groups. (D) The box plot shows that the circRNAs were regulated by quantile normalization.
Differentially Expressed circRNAs Between LUAD Tumour Tissues and Patient-Matched Normal Lung Tissues
| circRNA | FC (abs) | P-value | Regulation | Gene Symbol | MRE1 | MRE2 | MRE3 |
|---|---|---|---|---|---|---|---|
| hsa_circ_101555 | 6.520426 | 0.013994791 | Up | CSNK1G1 | hsa-miR-644a | hsa-miR-485-5p | hsa-miR-889-5p |
| hsa_circ_000812 | 6.1918338 | 0.023484599 | Up | RNF213 | hsa-miR-1207-5p | hsa-miR-7114-3p | hsa-miR-6775-5p |
| hsa_circ_050649 | 5.3178332 | 0.011359312 | Up | HSPB6 | hsa-miR-1182 | hsa-miR-6756-5p | hsa-miR-608 |
| hsa_circ_104871 | 4.4563968 | 1.27521E-05 | Up | SUSD1 | hsa-miR-611 | hsa-miR-612 | hsa-miR-873-3p |
| hsa_circ_050648 | 4.4243301 | 0.040784018 | Up | HSPB6 | hsa-miR-1182 | hsa-miR-608 | hsa-miR-6803-5p |
| hsa_circ_101287 | 4.2811536 | 0.016791235 | Up | UGGT2 | hsa-miR-499a-3p | hsa-miR-526b-5p | hsa-miR-363-3p |
| hsa_circ_006349 | 4.2255535 | 0.029683806 | Up | TMEM39B | hsa-miR-214-3p | hsa-miR-3619-5p | hsa-miR-761 |
| hsa_circ_100445 | 4.2016686 | 0.021622152 | Up | TATDN3 | hsa-miR-511-5p | hsa-miR-32-3p | hsa-miR-141-5p |
| hsa_circ_018998 | 3.9427011 | 0.009428965 | Up | CCSER2 | hsa-miR-4682 | hsa-miR-519a-3p | hsa-miR-338-3p |
| hsa_circ_025249 | 3.9295203 | 0.031727797 | Up | MLF2 | hsa-miR-664a-3p | hsa-miR-6776-3p | hsa-miR-497-3p |
| hsa_circ_008584 | 3.8880833 | 0.039192463 | Up | PTPRM | hsa-miR-5195-3p | hsa-miR-4441 | hsa-miR-4270 |
| hsa_circ_101408 | 3.8585861 | 0.010402998 | Up | TTLL5 | hsa-miR-136-5p | hsa-miR-500a-5p | hsa-miR-578 |
| hsa_circ_000680 | 3.8017165 | 0.013183437 | Up | IQCK | hsa-miR-5002-5p | hsa-miR-6081 | hsa-miR-4773 |
| hsa_circ_071312 | 3.7651581 | 0.010366226 | Up | KIAA0922 | hsa-miR-4476 | hsa-miR-4722-5p | hsa-miR-377-3p |
| hsa_circ_104248 | 3.7642914 | 0.001710613 | Up | TULP4 | hsa-miR-611 | hsa-miR-30c-1-3p | hsa-miR-149-3p |
| hsa_circ_074306 | 3.7441708 | 0.000566184 | Up | DIAPH1 | hsa-miR-4763-3p | hsa-miR-3157-5p | hsa-miR-1249-5p |
| hsa_circ_406325 | 3.734959 | 0.004474842 | Up | CFAP44 | hsa-miR-376a-3p | hsa-miR-376b-3p | hsa-miR-204-5p |
| hsa_circ_008068 | 2.4292604 | 0.024289003 | Up | KATNAL1 | hsa-miR-4686 | hsa-miR-4778-3p | hsa-miR-1236-3p |
| hsa_circ_103730 | 4.1152223 | 0.036934546 | Down | PRDM5 | hsa-miR-578 | hsa-miR-501-5p | hsa-miR-581 |
| hsa_circ_009054 | 2.9641589 | 0.018038439 | Down | MCC | hsa-miR-33a-5p | hsa-miR-4685-5p | hsa-miR-6855-5p |
| hsa_circ_013959 | 2.2251531 | 0.021125268 | Down | ACP6 | hsa-miR-4461 | hsa-miR-3118 | hsa-miR-134-5p |
| hsa_circ_103147 | 2.2145335 | 0.00934726 | Down | ADARB1 | hsa-miR-150-3p | hsa-miR-485-5p | hsa-miR-509-5p |
| hsa_circ_103414 | 2.0938049 | 0.043648269 | Down | FOXP1 | hsa-miR-370-3p | hsa-miR-558 | hsa-miR-127-5p |
| hsa_circ_103606 | 2.013322 | 0.013395802 | Down | LDB2 | hsa-miR-640 | hsa-miR-655-3p | hsa-miR-380-3p |
| hsa_circ_075648 | 2.0062532 | 0.005400543 | Down | SIRT5 | hsa-miR-516b-5p | hsa-miR-4691-3p | hsa-miR-4731-5p |
| hsa_circ_000303 | 1.914726 | 0.022906399 | Down | SPI1 | hsa-miR-6751-5p | hsa-miR-6756-5p | hsa-miR-608 |
| hsa_circ_007249 | 1.8908124 | 0.016229085 | Down | ZCCHC17 | hsa-miR-877-3p | hsa-miR-216b-3p | hsa-miR-4778-3p |
| hsa_circ_100118 | 1.8337658 | 0.045045547 | Down | EYA3 | hsa-miR-202-3p | hsa-miR-301a-5p | hsa-miR-616-3p |
Figure 2Hsa_circ_101555 and hsa_circ_008068 expressed in the tissues and plasma of LUAD patients. (A) The mRNA of hsa_circ_101555 in the tissues of LUAD patients compared with matched adjacent normal tissues. (B) The mRNA of hsa_circ_008068 in the tissues of LUAD patients compared with matched adjacent normal tissues. (C) Hsa_circ_101555 expressed in the plasma of LUAD patients compared with healthy donors. (D) Hsa_circ_008068 expressed in the plasma of LUAD patients compared with healthy donors. Differences between groups were analysed using a t-test. *P < 0.05, **P < 0.01, ***P < 0.001, significantly different from the values in the normal tissues and healthy donors.
Correlation Between the Expression of Plasma circRNAs and Clinical Characteristics in LUAD Patients
| Characteristics | LUAD Patients (n) | hsa_circ_101555 | hsa_circ_008068 | ||
|---|---|---|---|---|---|
| Tumor location | |||||
| Left | 10 | 1.54±0.27 | 0.642 | 1.12±0.45 | 0.353 |
| Right | 20 | 1.36±0.24 | 1.64±0.31 | ||
| Differentiation | |||||
| High and moderate | 28 | 1.31±0.24 | 0.018 | 1.27±0.16 | 0.001 |
| Poor | 2 | 3.67±1.16 | 3.44±0.07 | ||
| Tumor size (cm) | |||||
| ≤ 3 | 25 | 1.21±0.26 | 0.025 | 1.17±0.15 | 0.001 |
| > 3 | 5 | 2.72±0.62 | 2.64±0.51 |
Figure 3Traditional tumour marker correlations with hsa_circ_101555 and hsa_circ_008068 in the plasma of early-stage LUAD patients. (A) Correlation between hsa_circ_101555 and CEA in LUAD patients. (B) Correlation between hsa_circ_008068 and CEA in LUAD patients. (C) Correlation between hsa_circ_101555 and SCC in LUAD patients. (D) Correlation between hsa_circ_008068 and SCC in LUAD patients. (E) Correlation between hsa_circ_101555 and CYFRA21-1 in LUAD patients. (F) Correlation between hsa_circ_008068 and CYFRA21-1 in LUAD patients. Correlation analysis was performed using the Spearman’s rank correlation test.
Figure 4ROC curve analyses of circRNAs and three traditional biomarkers for the detection of early-stage LUAD. (A) ROC analysis for the detection of LUAD using hsa_circ_101555. (B) ROC analysis for the detection of LUAD using hsa_circ_008068. (C) ROC analysis for the detection of LUAD using CEA. (D) ROC analysis for the detection of LUAD using SCC. (E) ROC analysis for the detection of LUAD using CYFRA21-1. (F) ROC analysis for the detection of LUAD using hsa_circ_101555 combined three tumour biomarkers. (G) ROC analysis for the detection of LUAD using hsa_circ_008068 combined three tumour biomarkers. The AUC values are given on the graphs.
The Diagnostic Efficacy of circRNAs and Three Traditional Biomarkers for the Detection of LUAD
| AUC | Sensitivity | Specificity | 95% CI | ||
|---|---|---|---|---|---|
| hsa_circ_101555 | 0.708 | 76.67 | 60 | 0.578–0.838 | 0.006 |
| hsa_circ_008068 | 0.644 | 70 | 53.33 | 0.503–0.784 | 0.049 |
| CEA | 0.599 | 60 | 53.33 | 0.443–0.755 | 0.188 |
| SCC | 0.506 | 50 | 50 | 0.355–0.656 | 0.941 |
| CYFRA21-1 | 0.531 | 56.67 | 53.33 | 0.377–0.684 | 0.684 |
| hsa_circ_101555+CEA+SCC+CYFRA21-1 | 0.753 | 66.67 | 80 | 0.628–0.879 | 0.001 |
| hsa_circ_008068+CEA+SCC+CYFRA21-1 | 0.704 | 73.33 | 66.67 | 0.571–0.837 | 0.007 |