Literature DB >> 35704187

RNase H1, the Gold Standard for R-Loop Detection.

Susana M Cerritelli1, Kiran Sakhuja1, Robert J Crouch2.   

Abstract

RNase H1 has become an essential tool to uncover the physiological and pathological roles of R-loops, three-stranded structures consisting of and RNA-DNA hybrid opposite to a single DNA strand (ssDNA). RNase H1 degrades the RNA portion of the R-loops returning the two DNA strands to double-stranded form (dsDNA). Overexpression of RNase H1 in different systems has helped to address the questions of where R-loops are located, their abundance, and mechanisms of formation, stability, and degradation. In this chapter we review multiple studies that used RNase H1 as an instrument to investigate R-loops multiple functions and their relevance in health and diseases.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  DNA damage; R-loops; RNA–DNA hybrids; RNase H1; Replicative stress; Transcription–replication conflicts

Mesh:

Substances:

Year:  2022        PMID: 35704187     DOI: 10.1007/978-1-0716-2477-7_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  101 in total

1.  R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.

Authors:  Kefei Yu; Frederic Chedin; Chih-Lin Hsieh; Thomas E Wilson; Michael R Lieber
Journal:  Nat Immunol       Date:  2003-05       Impact factor: 25.606

Review 2.  R loops: from transcription byproducts to threats to genome stability.

Authors:  Andrés Aguilera; Tatiana García-Muse
Journal:  Mol Cell       Date:  2012-04-27       Impact factor: 17.970

3.  A mechanism of formation of a persistent hybrid between elongating RNA and template DNA.

Authors:  H Masukata; J Tomizawa
Journal:  Cell       Date:  1990-07-27       Impact factor: 41.582

4.  Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability.

Authors:  Xialu Li; James L Manley
Journal:  Cell       Date:  2005-08-12       Impact factor: 41.582

5.  Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.

Authors:  Corina Ohle; Rafael Tesorero; Géza Schermann; Nikolay Dobrev; Irmgard Sinning; Tamás Fischer
Journal:  Cell       Date:  2016-10-27       Impact factor: 41.582

6.  Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex.

Authors:  B Liu; B M Alberts
Journal:  Science       Date:  1995-02-24       Impact factor: 47.728

7.  Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H.

Authors:  T Itoh; J Tomizawa
Journal:  Proc Natl Acad Sci U S A       Date:  1980-05       Impact factor: 11.205

8.  Primer retention owing to the absence of RNase H1 is catastrophic for mitochondrial DNA replication.

Authors:  J Bradley Holmes; Gokhan Akman; Stuart R Wood; Kiran Sakhuja; Susana M Cerritelli; Chloe Moss; Mark R Bowmaker; Howard T Jacobs; Robert J Crouch; Ian J Holt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-10       Impact factor: 11.205

9.  Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.

Authors:  Konstantina Skourti-Stathaki; Nicholas J Proudfoot; Natalia Gromak
Journal:  Mol Cell       Date:  2011-06-24       Impact factor: 17.970

10.  Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.

Authors:  Sarah Cohen; Nadine Puget; Yea-Lih Lin; Thomas Clouaire; Marion Aguirrebengoa; Vincent Rocher; Philippe Pasero; Yvan Canitrot; Gaëlle Legube
Journal:  Nat Commun       Date:  2018-02-07       Impact factor: 14.919

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