Literature DB >> 35699786

Microvirga puerhi sp. nov., isolated from Puerh tea garden soil.

Zhi-Da Zi1, Wen Wen1, Fu Ma1, Wei Li1, Zhao-Xuan Wang2, Jun Lu3, Jie Lv4.   

Abstract

Strain WGZ8T was isolated from a soil sample of Puerh tea garden in Pu'er city, Southwest China. The isolate was rod-shaped, Gram-stain negative, facultative anaerobic, non-motile. Growth occurred within 0-3.0% (w/v) NaCl (optimal concentration, 0-1.0%), pH 5.0-11.0 (optimal pH, 7.0) and 10-40 °C (optimal temperature, 28 °C). 16S rRNA gene sequence-based phylogenetic and phylogenomic analysis revealed that WGZ8T belonged to the genus Microvirga. Its major cellular fatty acids were C19:0 cyclo ω8c, C16:0, C18:1ω7c and/or C18:1ω6c. The profile of polar lipids included phosphatidyldimethylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol and phosphatidylglycerol. The only respiratory quinone was detected as ubiquinone 10 (Q-10). The genome size of strain WGZ8T was 5.17 MB, and the content of DNA G + C was 61 mol%. Based on the results of digital DNA-DNA hybridization and phenotypic results, strain WGZ8T could be concluded as a novel species of the genus Microvirga, for which the name Microvirga puerhi sp. nov. is proposed. The type strain is WGZ8T (= CGMCC 1.19171 T = JCM 35317 T).
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Genome; Microvirga; Novel species; Polyphasic taxonomy; Puerh tea garden soil

Mesh:

Substances:

Year:  2022        PMID: 35699786     DOI: 10.1007/s00203-022-02988-6

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.667


  16 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  Microvirga subterranea gen. nov., sp. nov., a moderate thermophile from a deep subsurface Australian thermal aquifer.

Authors:  Sungwan Kanso; Bharat K C Patel
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

3.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.

Authors:  Ok-Sun Kim; Yong-Joon Cho; Kihyun Lee; Seok-Hwan Yoon; Mincheol Kim; Hyunsoo Na; Sang-Cheol Park; Yoon Seong Jeon; Jae-Hak Lee; Hana Yi; Sungho Won; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-25       Impact factor: 2.747

4.  Genomic insights that advance the species definition for prokaryotes.

Authors:  Konstantinos T Konstantinidis; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

5.  Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea.

Authors:  H Kishino; M Hasegawa
Journal:  J Mol Evol       Date:  1989-08       Impact factor: 2.395

6.  Microvirga rosea sp. nov.: a nanoparticle producing bacterium isolated from soil of rose garden.

Authors:  Md Amdadul Huq
Journal:  Arch Microbiol       Date:  2018-07-30       Impact factor: 2.552

7.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

8.  Hymenobacter qilianensis sp. nov., isolated from a subsurface sandstone sediment in the permafrost region of Qilian Mountains, China and emended description of the genus Hymenobacter.

Authors:  Lu Han; Shu-Jiao Wu; Chun-Yan Qin; You-Hai Zhu; Zhen-Quan Lu; Bing Xie; Jie Lv
Journal:  Antonie Van Leeuwenhoek       Date:  2014-03-28       Impact factor: 2.271

9.  Devosia sediminis sp. nov., isolated from subterranean sediment.

Authors:  Fu Ma; Zhi-Da Zi; Wei Li; Zhao-Xuan Wang; Jun Lu; Jie Lv
Journal:  Arch Microbiol       Date:  2021-06-19       Impact factor: 2.552

10.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.

Authors:  Alexander F Auch; Mathias von Jan; Hans-Peter Klenk; Markus Göker
Journal:  Stand Genomic Sci       Date:  2010-01-28
View more
  1 in total

1.  Enhancing the Activity of Carboxymethyl Cellulase Enzyme Using Highly Stable Selenium Nanoparticles Biosynthesized by Bacillus paralicheniformis Y4.

Authors:  Yidan Wang; Yonghe Yu; Yuhua Duan; Qin Wang; Xin Cong; Yi He; Chao Gao; Muhammad Hafeez; Saad Jan; Syed Majid Rasheed; Shuiyuan Cheng; Zhangqian Wang
Journal:  Molecules       Date:  2022-07-18       Impact factor: 4.927

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.