Literature DB >> 35698015

Identify Biomarkers of Alzheimer's Disease Based on Multi-task Canonical Correlation Analysis and Regression Model.

Shuaiqun Wang1, Huiqiu Chen2, Wei Kong2, Fengchun Ke2, Kai Wei2.   

Abstract

Imaging genetics using imaging technology is regarded as a neuroanatomical phenotype to evaluate gene single nucleotide polymorphisms and their effects on the structure and function of different brain regions. It plays a vital role in bridging the initial understanding of the genetic basis of brain structure and dysfunction. Sparse canonical correlation analysis (SCCA) has become a widespread technique in this field because of its powerful ability to identify bivariate relationships and feature selection. Since most traditional SCCA algorithms assume that the input features are independent, this method obviously cannot be used to analyze genetic image data. The MT-SCCA model is unsupervised and cannot identify the genotype-phenotype associations for diagnostic guidance. Meanwhile, a single biological clinical index cannot fully reflect the physiological process of a comprehensive disease. Therefore, it is necessary to find biomarkers that can reflect Alzheimer's disease and physiological functions that can more comprehensively reflect the development of the disease. This article uses a multi-task sparse canonical correlation analysis and regression (MT-SCCAR) model to combine the annual depression level total score (GDSCALE), clinical dementia assessment scale (GLOBAL CDR), functional activity questionnaire (FAQ), and neuropsychiatric Symptom Questionnaire (NPI-Q) in this paper. These four clinical data are used as compensation information and embedded in the algorithm in a linear regression manner. It also reflects its superiority and robustness compared to traditional correlation analysis methods on actual and simulated data. Meanwhile, compared with MT-SCCA, the model utilized in this paper obtains a higher gene-ROI weight and identifies clearer biomarkers, which provides a practical basis for the study of complex human disease pathology.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Alzheimer’s disease; Biomarkers; Clinical data; Genetic imaging; MT-SCCAR model

Mesh:

Substances:

Year:  2022        PMID: 35698015     DOI: 10.1007/s12031-022-02031-9

Source DB:  PubMed          Journal:  J Mol Neurosci        ISSN: 0895-8696            Impact factor:   2.866


  5 in total

1.  Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease.

Authors:  Lei Yu; Lori B Chibnik; Gyan P Srivastava; Nathalie Pochet; Jingyun Yang; Jishu Xu; James Kozubek; Nikolaus Obholzer; Sue E Leurgans; Julie A Schneider; Alexander Meissner; Philip L De Jager; David A Bennett
Journal:  JAMA Neurol       Date:  2015-01       Impact factor: 18.302

2.  Adaptive Sparse Multiple Canonical Correlation Analysis With Application to Imaging (Epi)Genomics Study of Schizophrenia.

Authors:  Wenxing Hu; Dongdong Lin; Shaolong Cao; Jingyu Liu; Jiayu Chen; Vince D Calhoun; Yu-Ping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2018-02       Impact factor: 4.538

3.  Mining Outcome-relevant Brain Imaging Genetic Associations via Three-way Sparse Canonical Correlation Analysis in Alzheimer's Disease.

Authors:  Xiaoke Hao; Chanxiu Li; Lei Du; Xiaohui Yao; Jingwen Yan; Shannon L Risacher; Andrew J Saykin; Li Shen; Daoqiang Zhang
Journal:  Sci Rep       Date:  2017-03-14       Impact factor: 4.379

4.  Specific detection of Staphylococcus aureus infection and marker for Alzheimer disease by surface enhanced Raman spectroscopy using silver and gold nanoparticle-coated magnetic polystyrene beads.

Authors:  Robert Prucek; Aleš Panáček; Žaneta Gajdová; Renata Večeřová; Libor Kvítek; Jiří Gallo; Milan Kolář
Journal:  Sci Rep       Date:  2021-03-18       Impact factor: 4.379

5.  The Parkinson's Disease Protein LRRK2 Interacts with the GARP Complex to Promote Retrograde Transport to the trans-Golgi Network.

Authors:  Alexandra Beilina; Luis Bonet-Ponce; Ravindran Kumaran; Jennifer J Kordich; Morié Ishida; Adamantios Mamais; Alice Kaganovich; Sara Saez-Atienzar; David C Gershlick; Dorien A Roosen; Laura Pellegrini; Vlad Malkov; Matthew J Fell; Kirsten Harvey; Juan S Bonifacino; Darren J Moore; Mark R Cookson
Journal:  Cell Rep       Date:  2020-05-05       Impact factor: 9.423

  5 in total

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