Literature DB >> 35695837

How to reduce dimension with PCA and random projections?

Fan Yang1, Sifan Liu2, Edgar Dobriban1, David P Woodruff3.   

Abstract

In our "big data" age, the size and complexity of data is steadily increasing. Methods for dimension reduction are ever more popular and useful. Two distinct types of dimension reduction are "data-oblivious" methods such as random projections and sketching, and "data-aware" methods such as principal component analysis (PCA). Both have their strengths, such as speed for random projections, and data-adaptivity for PCA. In this work, we study how to combine them to get the best of both. We study "sketch and solve" methods that take a random projection (or sketch) first, and compute PCA after. We compute the performance of several popular sketching methods (random iid projections, random sampling, subsampled Hadamard transform, CountSketch, etc) in a general "signal-plus-noise" (or spiked) data model. Compared to well-known works, our results (1) give asymptotically exact results, and (2) apply when the signal components are only slightly above the noise, but the projection dimension is non-negligible. We also study stronger signals allowing more general covariance structures. We find that (a) signal strength decreases under projection in a delicate way depending on the structure of the data and the sketching method, (b) orthogonal projections are slightly more accurate, (c) randomization does not hurt too much, due to concentration of measure, (d) CountSketch can be somewhat improved by a normalization method. Our results have implications for statistical learning and data analysis. We also illustrate that the results are highly accurate in simulations and in analyzing empirical data.

Entities:  

Keywords:  Dimension reduction; principal component analysis; random matrix theory; random projection; sketching

Year:  2021        PMID: 35695837      PMCID: PMC9173709          DOI: 10.1109/tit.2021.3112821

Source DB:  PubMed          Journal:  IEEE Trans Inf Theory        ISSN: 0018-9448            Impact factor:   2.978


  6 in total

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Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

2.  Randomized algorithms for the low-rank approximation of matrices.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-04       Impact factor: 11.205

3.  Fast Principal-Component Analysis Reveals Convergent Evolution of ADH1B in Europe and East Asia.

Authors:  Kevin J Galinsky; Gaurav Bhatia; Po-Ru Loh; Stoyan Georgiev; Sayan Mukherjee; Nick J Patterson; Alkes L Price
Journal:  Am J Hum Genet       Date:  2016-02-25       Impact factor: 11.025

4.  PCA in High Dimensions: An orientation.

Authors:  Iain M Johnstone; Debashis Paul
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2018-07-18       Impact factor: 10.961

5.  Worldwide human relationships inferred from genome-wide patterns of variation.

Authors:  Jun Z Li; Devin M Absher; Hua Tang; Audrey M Southwick; Amanda M Casto; Sohini Ramachandran; Howard M Cann; Gregory S Barsh; Marcus Feldman; Luigi L Cavalli-Sforza; Richard M Myers
Journal:  Science       Date:  2008-02-22       Impact factor: 47.728

6.  Optimal Shrinkage of Eigenvalues in the Spiked Covariance Model.

Authors:  David L Donoho; Matan Gavish; Iain M Johnstone
Journal:  Ann Stat       Date:  2018-06-27       Impact factor: 4.028

  6 in total

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