Literature DB >> 35693844

O2 Reduction by Biosynthetic Models of Cytochrome c Oxidase: Insights into Role of Proton Transfer Residues from Perturbed Active Sites Models of CcO.

Sohini Mukherjee1, Manjistha Mukherjee1, Arnab Mukherjee2, Ambika Bhagi-Damodaran2, Yi Lu2, Abhishek Dey1.   

Abstract

Myoglobin based biosynthetic models of perturbed cytochrome c oxidase (CcO) active site are reconstituted, in situ, on electrodes where glutamate residues are systematically introduced in the distal site of the heme/Cu active site instead of a tyrosine residue. These biochemical electrodes show efficient 4e-/4H+ reduction with turnover rates and numbers more than 107 M-1 s-1 and 104, respectively. The H2O/D2O isotope effects of these series of crystallographically characterized mutants bearing zero, one, and two glutamate residues near the heme Cu active site of these perturbed CcO mimics are 16, 4, and 2, respectively. In situ SERRS-RDE data indicate complete change in the rate-determining step as proton transfer residues are introduced near the active site. The high selectivity for 4e-/4H+ O2 reduction and systematic variation of KSIE demonstrate the dominant role of proton transfer residues on the isotope effect on rate and rate-determining step of O2 reduction.

Entities:  

Keywords:  O2 reduction reaction; biosynthetic model; cytochrome c oxidase; kinetic isotope effect; kinetic rate constant; proton transfer residues

Year:  2018        PMID: 35693844      PMCID: PMC9186439          DOI: 10.1021/acscatal.8b02240

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.700


  40 in total

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Authors:  David R Weinberg; Christopher J Gagliardi; Jonathan F Hull; Christine Fecenko Murphy; Caleb A Kent; Brittany C Westlake; Amit Paul; Daniel H Ess; Dewey Granville McCafferty; Thomas J Meyer
Journal:  Chem Rev       Date:  2012-06-18       Impact factor: 60.622

Review 2.  Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type.

Authors:  Walter G Zumft
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

3.  Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structure model relevant to cytochrome oxidase.

Authors:  N Sakurai; T Sakurai
Journal:  Biochem Biophys Res Commun       Date:  1998-02-13       Impact factor: 3.575

4.  Hydrogen evolution from neutral water under aerobic conditions catalyzed by cobalt microperoxidase-11.

Authors:  Jesse G Kleingardner; Banu Kandemir; Kara L Bren
Journal:  J Am Chem Soc       Date:  2013-12-23       Impact factor: 15.419

5.  Roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin.

Authors:  Ying-Wu Lin; Natasha Yeung; Yi-Gui Gao; Kyle D Miner; Shiliang Tian; Howard Robinson; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

6.  Structural basis of biological N2O generation by bacterial nitric oxide reductase.

Authors:  Tomoya Hino; Yushi Matsumoto; Shingo Nagano; Hiroshi Sugimoto; Yoshihiro Fukumori; Takeshi Murata; So Iwata; Yoshitsugu Shiro
Journal:  Science       Date:  2010-11-25       Impact factor: 47.728

7.  The MCD and EPR of the heme centers of nitric oxide reductase from Pseudomonas stutzeri: evidence that the enzyme is structurally related to the heme-copper oxidases.

Authors:  M R Cheesman; W G Zumft; A J Thomson
Journal:  Biochemistry       Date:  1998-03-17       Impact factor: 3.162

8.  Functional analogues of the dioxygen reduction site in cytochrome oxidase: mechanistic aspects and possible effects of Cu(B).

Authors:  Roman Boulatov; James P Collman; Irina M Shiryaeva; Christopher J Sunderland
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

Review 9.  One heme, diverse functions: using biosynthetic myoglobin models to gain insights into heme-copper oxidases and nitric oxide reductases.

Authors:  Natasha Yeung; Yi Lu
Journal:  Chem Biodivers       Date:  2008-08       Impact factor: 2.745

10.  Rational design of a structural and functional nitric oxide reductase.

Authors:  Natasha Yeung; Ying-Wu Lin; Yi-Gui Gao; Xuan Zhao; Brandy S Russell; Lanyu Lei; Kyle D Miner; Howard Robinson; Yi Lu
Journal:  Nature       Date:  2009-11-25       Impact factor: 49.962

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