Literature DB >> 3569298

Isomeric equilibria in complexes of adenosine 5'-triphosphate with divalent metal ions. Solution structures of M(ATP)2- complexes.

H Sigel.   

Abstract

Solution structures of M(ATP)2- complexes are reviewed. First the self-stacking properties of ATP4- and M(ATP)2- are shortly described. It is emphasized that for an evaluation of solution structures of M(ATP)2- complexes only results from diluted solutions (below 1 mM) should be used. Next, a comprehensive set of stability data obtained under such conditions from potentiometric pH titrations is summarized for the complexes of Mg2+, Ca2+, Mn2+, Co2+, Ni2+, Cu2+, Zn2+ and Cd2+ with ATP, and for comparison also with pyrimidine nucleoside 5'-triphosphates (YTPs), i.e. CTP, UTP and TTP. The stabilities for the M(ATP)2- complexes are mostly larger than those for the corresponding M(YTP)2- species; this increased stability results from the metal ion back-binding to the base residue in M(ATP)2-, i.e. macrochelates are formed. Detailed analysis of the stability data allows calculation of the percentage of the closed form for the several M(ATP)2- complexes: back-binding is most pronounced in Cu(ATP)2- (67 +/- 2%), remarkable in Zn(ATP)2- (28 +/- 7%), and not observable for Ca(ATP)2- (2 +/- 6%). Comparison of these results with those from 1H-NMR and ultraviolet spectrophotometric studies allows the conclusion that two types of base back-bound macrochelates are formed: one with a direct, i.e. innersphere, M2+/N-7 coordination, and one with a water molecule between the metal ion and N-7, i.e. an outersphere interaction occurs [e.g. to about 10% in Mg(ATP)2-] through hydrogen bonding of a coordinated water to N-7. The formation degree of both forms of these closed isomers is quantified. The biological implications of these results are indicated and the versatility of ATP as a ligand is discussed by summarizing pertinent examples.

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Year:  1987        PMID: 3569298     DOI: 10.1111/j.1432-1033.1987.tb11194.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  20 in total

1.  Divalent transition metal cations counteract potassium-induced quadruplex assembly of oligo(dG) sequences.

Authors:  S W Blume; V Guarcello; W Zacharias; D M Miller
Journal:  Nucleic Acids Res       Date:  1997-02-01       Impact factor: 16.971

2.  Mechanistic characterization of the 5'-triphosphate-dependent activation of PKR: lack of 5'-end nucleobase specificity, evidence for a distinct triphosphate binding site, and a critical role for the dsRBD.

Authors:  Rebecca Toroney; Chelsea M Hull; Joshua E Sokoloski; Philip C Bevilacqua
Journal:  RNA       Date:  2012-08-21       Impact factor: 4.942

3.  Nucleotides and inorganic phosphates as potential antioxidants.

Authors:  Yael Richter; Bilha Fischer
Journal:  J Biol Inorg Chem       Date:  2006-08-01       Impact factor: 3.358

4.  Nucleotide binding triggers a conformational change of the CBS module of the magnesium transporter CNNM2 from a twisted towards a flat structure.

Authors:  María Ángeles Corral-Rodríguez; Marchel Stuiver; Guillermo Abascal-Palacios; Tammo Diercks; Iker Oyenarte; June Ereño-Orbea; Alain Ibáñez de Opakua; Francisco J Blanco; José Antonio Encinar; Vojtêch Spiwok; Hiroyuki Terashima; Alessio Accardi; Dominik Müller; Luis Alfonso Martínez-Cruz
Journal:  Biochem J       Date:  2014-11-15       Impact factor: 3.857

5.  Water counting: quantitating the hydration level of paramagnetic metal ions bound to nucleotides and nucleic acids.

Authors:  Charles G Hoogstraten; R David Britt
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

6.  Intracellular nucleotide-mediated gating of SUR/Kir6.0 complex potassium channels expressed in a mammalian cell line and its modification by pinacidil.

Authors:  E Satoh; M Yamada; C Kondo; V P Repunte; Y Horio; T Iijima; Y Kurachi
Journal:  J Physiol       Date:  1998-09-15       Impact factor: 5.182

7.  Modulation of ATP-induced currents by zinc in acutely isolated hypothalamic neurons of the rat.

Authors:  Vladimir S Vorobjev; Irina N Sharonova; Olga A Sergeeva; Helmut L Haas
Journal:  Br J Pharmacol       Date:  2003-07       Impact factor: 8.739

8.  Structural basis for VO(2+)-inhibition of nitrogenase activity: (B) pH-sensitive inner-sphere rearrangements in the 1H-environment of the metal coordination site of the nitrogenase Fe-protein identified by ENDOR spectroscopy.

Authors:  Jan Petersen; Claire J Mitchell; Karl Fisher; David J Lowe
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

9.  Structural basis for VO2+ inhibition of nitrogenase activity (A): 31P and 23Na interactions with the metal at the nucleotide binding site of the nitrogenase Fe protein identified by ENDOR spectroscopy.

Authors:  Jan Petersen; Karl Fisher; David J Lowe
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

10.  Role of ATP-conductive anion channel in ATP release from neonatal rat cardiomyocytes in ischaemic or hypoxic conditions.

Authors:  Amal K Dutta; Ravshan Z Sabirov; Hiromi Uramoto; Yasunobu Okada
Journal:  J Physiol       Date:  2004-07-22       Impact factor: 5.182

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