Literature DB >> 35689380

Heme-bound tyrosine vibrations in hemoglobin M: Resonance Raman, crystallography, and DFT calculation.

Shigenori Nagatomo1, Mitsuo Shoji2, Takuto Terada3, Kiyoharu Nakatani3, Yasuteru Shigeta4, Shun Hirota5, Sachiko Yanagisawa6, Minoru Kubo6, Teizo Kitagawa7, Masako Nagai8, Mio Ohki9, Sam-Yong Park9, Naoya Shibayama10.   

Abstract

Hemoglobins M (Hbs M) are human hemoglobin variants in which either the α or β subunit contains a ferric heme in the α2β2 tetramer. Though the ferric subunit cannot bind O2, it regulates O2 affinity of its counterpart ferrous subunit. We have investigated resonance Raman spectra of two Hbs, M Iwate (α87His → tyrosine [Tyr]) and M Boston (α58His → Tyr), having tyrosine as a heme axial ligand at proximal and distal positions, respectively, that exhibit unassigned resonance Raman bands arising from ferric (not ferrous) hemes at 899 and 876 cm-1. Our quantum chemical calculations using density functional theory on Fe-porphyrin models with p-cresol and/or 4-methylimidazole showed that the unassigned bands correspond to the breathing-like modes of Fe3+-bound Tyr and are sensitive to the Fe-O-C(Tyr) angle. Based on the frequencies of the Raman bands, the Fe-O-C(Tyr) angles of Hbs M Iwate and M Boston were predicted to be 153.5° and 129.2°, respectively. Consistent with this prediction, x-ray crystallographic analysis showed that the Fe-O-C(Tyr) angles of Hbs M Iwate and M Boston in the T quaternary structure were 153.6° and 134.6°, respectively. It also showed a similar Fe-O bond length (1.96 and 1.97 Å) and different tilting angles.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35689380      PMCID: PMC9382339          DOI: 10.1016/j.bpj.2022.06.012

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  34 in total

1.  Interrelationship among Fe-His Bond Strengths, Oxygen Affinities, and Intersubunit Hydrogen Bonding Changes upon Ligand Binding in the β Subunit of Human Hemoglobin: The Alkaline Bohr Effect.

Authors:  Shigenori Nagatomo; Miki Okumura; Kazuya Saito; Takashi Ogura; Teizo Kitagawa; Masako Nagai
Journal:  Biochemistry       Date:  2017-02-24       Impact factor: 3.162

2.  Characteristics in tyrosine coordinations of four hemoglobins M probed by resonance Raman spectroscopy.

Authors:  M Nagai; Y Yoneyama; T Kitagawa
Journal:  Biochemistry       Date:  1989-03-21       Impact factor: 3.162

Review 3.  Regulation of oxygen affinity of hemoglobin: influence of structure of the globin on the heme iron.

Authors:  M F Perutz
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

4.  Reduction and spectroscopic properties of hemoglobins M.

Authors:  M Nagai; S Takama; Y Yoneyama
Journal:  Acta Haematol       Date:  1987       Impact factor: 2.195

5.  Weak O2 binding and strong H2O2 binding at the non-heme diiron center of trypanosome alternative oxidase.

Authors:  Sotaro Yamasaki; Mitsuo Shoji; Megumi Kayanuma; Vladimir Sladek; Daniel Ken Inaoka; Yuichi Matsuo; Tomoo Shiba; Luke Young; Anthony L Moore; Kiyoshi Kita; Yasuteru Shigeta
Journal:  Biochim Biophys Acta Bioenerg       Date:  2020-12-29       Impact factor: 3.991

6.  Axial ligation modes in iron(III) Porphyrins. Models for the oxidized reaction states of cytochrome P-450 enzymes and the molecular structure of iron(III) protoporphyrin IX dimethyl ester p-nitrobenzenethiolate.

Authors:  S C Tang; S Koch; G C Papaefthymiou; S Foner; R B Frankel; J A Ibers; R H Holm
Journal:  J Am Chem Soc       Date:  1976-04-28       Impact factor: 15.419

7.  Differences in coordination states of substituted tyrosine residues and quaternary structures among hemoglobin M probed by resonance Raman spectroscopy.

Authors:  Yayoi Aki; Masako Nagai; Yukifumi Nagai; Kiyohiro Imai; Michihiko Aki; Akira Sato; Minoru Kubo; Shigenori Nagatomo; Teizo Kitagawa
Journal:  J Biol Inorg Chem       Date:  2009-08-23       Impact factor: 3.358

8.  Resonance raman studies of hemoglobins M: evidence for iron-tyrosine charge-transfer interactions in the abnormal subunits of Hb M Boston and Hb M Iwate.

Authors:  K Nagai; T Kagimoto; A Hayashi; F Taketa; T Kitagawa
Journal:  Biochemistry       Date:  1983-03-01       Impact factor: 3.162

9.  Proton nuclear magnetic resonance studies of hemoglobin M Milwaukee and their implications concerning the mechanism of cooperative oxygenation of hemoglobin.

Authors:  L W Fung; A P Minton; T R Lindstrom; A V Pisciotta; C Ho
Journal:  Biochemistry       Date:  1977-04-05       Impact factor: 3.162

10.  An Origin of Cooperative Oxygen Binding of Human Adult Hemoglobin: Different Roles of the α and β Subunits in the α2β2 Tetramer.

Authors:  Shigenori Nagatomo; Yukifumi Nagai; Yayoi Aki; Hiroshi Sakurai; Kiyohiro Imai; Naoki Mizusawa; Takashi Ogura; Teizo Kitagawa; Masako Nagai
Journal:  PLoS One       Date:  2015-08-05       Impact factor: 3.240

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