| Literature DB >> 35689296 |
Soghra Khabnadideh1, Aida Solhjoo2, Reza Heidari1, Leila Amiri Zirtol1, Amirhossein Sakhteman2, Zahra Rezaei2, Elaheh Babaei3, Samaneh Rahimi2, Leila Emami4.
Abstract
A series of 2-aryl/alkyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazines (S1-S11) were synthesized with an eco-friendly and recoverable nanocatalyst (GO-Fe3O4-Ti(IV)) as an efficient magnetic composite. The new nanocatalyst was characterized by FT-IR, XRD and, EDS analysis. A conformable procedure, easy to work up and having a short reaction time with high yields are some advantages of this method. The new catalyst is also thermal-stable, reusable and, environment-friendly. The chemical structures of the synthesized 1,3-oxazine compounds were confirmed by comparing their melting points with those reported in literature. Then, the anticonvulsant activity of these compounds was assessed by the intraperitoneal pentylenetetrazole test (ipPTZ). Compounds S10 and S11 displayed considerable activity against chemically-induced seizure tests. The molecular simulation was also done to achieve their binding affinities as γ-aminobutyric acid A (GABA-A) receptor agonists as an assumptive mechanism of their anticonvulsant action. The result of molecular studies represented strongly matched with biological activity. Molecular docking simulation of the potent compound (S10) and diazepam as the positive control was performed and some critical residues like Thr262, Asn265, Met286, Phe289, and Val290 were identified. Based on the anticonvulsant results and also in silico ADME predictions, S11 can be to become a potential drug candidate as an anticonvulsant agent.Entities:
Keywords: 1,3-Oxazine; Anticonvulsant; Catalyst; GO-Fe3O4–Ti(IV); Molecular simulation; PTZ
Year: 2022 PMID: 35689296 PMCID: PMC9188075 DOI: 10.1186/s13065-022-00836-8
Source DB: PubMed Journal: BMC Chem ISSN: 2661-801X
Fig. 1Synthesis of 2-aryl/alkyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine derivatives
Fig. 2FT-IR spectrum of GO, GO-Fe3O4, and GO-Fe3O4-Ti(IV)
Fig. 3XRD patterns of GO-Fe3O4-Ti(IV)
Optimization of the reaction conditions for the synthesis of
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| Entry | Catalyst (g) | Temp | Solvent | Time (min) | Yield (%) |
| 1 | GO (0.04) | 60 | Solvent-free | 35 | 30 |
| 2 | GO-Fe3O4 (0.04) | 60 | Solvent-free | 30 | 65 |
| 3 | GO-Fe3O4-Ti (IV) (0.04) | 60 | Solvent-free | 12 | 92 |
| 4 | GO-Ti (IV) (0.04) | 60 | Solvent-free | 40 | 85 |
| 5 | GO-Fe3O4-Ti (IV) (0.04) | 60 | C2H5OH | 23 | 85 |
| 6 | GO-Fe3O4-Ti (IV) (0.04) | 60 | H2O | 25 | 85 |
| 7 | GO-Fe3O4-Ti (IV) (0.04) | 60 | CHCl3 | 25 | 48 |
| 8 | GO-Fe3O4-Ti (IV) (0.04) | 60 | Solvent-free | 12 | 92 |
| 9 | GO-Fe3O4-Ti (IV) (0.04) | Room temperature | Solvent-free | 50 | 70 |
| 10 | GO-Fe3O4-Ti (IV) (0.04) | 100 | Solvent-free | 12 | 92 |
| 11 | GO-Fe3O4-Ti (IV) (0.01) | 60 | Solvent-free | 40 | 67 |
| 12 | GO-Fe3O4-Ti (IV) (0.02) | 60 | Solvent-free | 45 | 85 |
| 13 | GO-Fe3O4-Ti (IV) (0.03) | 60 | Solvent-free | 20 | 90 |
| 14 | GO-Fe3O4-Ti (IV) (0.05) | 60 | Solvent-free | 12 | 92 |
Chemical structures, spectra data, and yields of the final synthesized of 1,3-naphtoxazines
| Entry | Chemical name | Spectra data | Yield (%) |
|---|---|---|---|
| 2-(4-bromophenyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | White solid, m.p. 116–118 °C. FT-IR (ATR) ῡ (cm−1): 1588, 1489, 1223, 1092. 1H NMR (Acetone-d6, 400 MHz) δ ppm: 7.84 (t, 2H, J = 9.2 Hz, Ar–H), 7.71 (d, 1H, J = 9.2 Hz, Ar–H), 7.52 (t, 1H, J = 8.4 Hz, Ar–H), 7.37–7.40 (m, 3H, Ar–H), 7.20 (d, 2H, J = 9.2 Hz, Ar–H), 7.01 (d, 1H, J = 9.2 Hz, Ar–H), 5.51 (s, 2H, O–CH2–N), 5.03 (s, 2H, –Ar–CH2–N) | 95 | |
| 2-benzyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Off-white, m.p. 125–127 °C. FT-IR (ATR) ῡ (cm−1): 1623, 1597, 1461, 1223, 1058, 738. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.05–7.71 (m, 11H, Ar–H), 4.89 (s, 2H, O–CH2–N), 4.22 (s, 2H, –Ar–CH2–N), 3.89 (s, 2H, –Ar–CH2–N). 13C NMR (DMSO-d6, 100 MHz) δ ppm: 46.5, 55.2, 81.5, 111.7, 118.3, 121.1, 123.4, 126.6, 127.2, 127.8, 128.3, 128.4, 128.5, 128.6, 131.5, 138.3, 151.4 | 94 | |
| 2-cyclohexyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Off-white solid, m.p. 248 °C (d). FT-IR (ATR) ῡ (cm−1): 2926, 2852, 1597, 1467, 1227, 1058. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.66–7.81 (m, 3H, Ar–H), 7.48 (m, 1H, Ar–H), 7.35 (m, 1H, Ar–H), 6.98 (m, 1H, Ar–H), 4.99 (s, 2H, O–CH2–N), 4.33 (s, 2H, –Ar–CH2–N), 2.70 (m, 1H, CH–N), 1.08–1.86 (m, 10H, 5CH2) | 92 | |
| 2-phenethyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | White solid, m.p. 232 °C (d). FT-IR (ATR) ῡ (cm−1): 1597, 1469, 1225, 1060. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.81 (m, 1H, Ar–H), 7.69 (m, 2H, Ar–H), 7.49 (m, 1H, Ar–H), 7.35 (m, 1H, Ar–H), 7.24 (m, 5H, Ar–H), 7.02 (m, 1H, Ar–H), 4.92 (s, 2H, O-CH2-N), 4.32 (s, 2H, –Ar–CH2–N), 2.96 (m, 2H, Ar–CH2– | 92 | |
| 2-phenyl-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | White solid, m.p. 47–49 °C FT-IR (ATR) ῡ (cm−1): 3060, 1600, 1496, 1231, 1057; 1H NMR (Acetone-d6, 400 MHz) δ ppm: 7.89 (d, 1H, J = 8.4 Hz, Ar–H), 7.85 (d, 1H, J = 8 Hz, Ar–H), 7.73 (d, 1H, J = 9.2 Hz, Ar–H), 7.53–7.57 (m, 1H, Ar–H), 7.38–7.42 (m, 1H, Ar–H), 7.23–7.28 (m, 4H, Ar–H), 7.04 (d, 1H, J = 8.8 Hz, Ar–H), 6.87–6.91 (m, 1H, Ar–H), 5.54 (s, 2H, O–CH2–N), 5.06 (s, 2H, –Ar–CH2–N) | 91 | |
| 2-hexyl-2,3,4a,10b-tetrahydro-1H-naphtho[1,2-e][1,3]oxazine | Brown solid, m.p. 177 °C (d). FT-IR (ATR) ῡ (cm−1): 2927, 2854, 1597, 1467, 1225, 1057. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.80 (m, 1H, Ar–H), 7.68 (m, 2H, Ar–H), 7.47 (m, 1H, Ar–H), 7.34 (m, 1H, Ar–H), 7.00 (m, 1H, Ar–H), 4.87 (s, 2H, O–CH2–N), 4.25 (s, 2H, –Ar–CH2–N), 2.68 (m, 2H, –CH2–N), 1.53 (m, 2H, CH2), 1.25 (m, 6H, 3CH2), 0.84 (m, 3H, CH3). 13C NMR (DMSO-d6, 125 MHz) δ ppm: 14.8, 23.0, 27.2, 28.4, 32.0, 47.9, 52.1, 82.7, 113.0, 119.1, 122.2, 124.1, 127.3, 128.5, 129.2, 129.3, 132.4, 152.4 | 91 | |
| 2-(p-tolyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Yellow solid, m.p. 87–89 °C. FT-IR (ATR) ῡ (cm−1): 1597, 1470, 1226, 1096. 1H NMR (Acetone-d6, 400 MHz) δ ppm: 7.82 (t, 2H, J = 8.8 Hz, Ar–H), 7.69 (d, 1H, J = 9.2 Hz, Ar–H), 7.51 (t, 1H, J = 8 Hz, Ar–H), 7.36 (t, 1H, J = 8 Hz, Ar–H), 6.99–7.04 (m, 3H, Ar–H), 7.09–7.11 (m, 2H, Ar–H), 5.52 (s, 2H, O–CH2–N), 5.02 (s, 2H, –Ar–CH2–N), 2.24 (s, 3H, CH3–Ar) | 94 | |
| 2-(2-chlorobenzyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Yellow soid, m.p. 70–75 °C. FT-IR (ATR) ῡ (cm−1): 1594, 1468, 1226, 1057. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.07–7.82 (m, 10H, Ar–H), 4.95 (s, 2H, O–CH2–N), 4.27 (s, 2H, –Ar–CH2–N), 4.00 (s, 2H, –Ar–CH2–N). 13C NMR (DMSO-d6, 100 MHz) δ ppm: 46.8, 52.6, 82.0, 111.7, 118.3, 121.3, 123.4, 126.5, 127.2, 127.8, 128.4, 128.5, 128.9, 129.35, 130.6, 131.5, 133.2, 135.8, 151.4 | 85 | |
| 2-(furan-2-ylmethyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Pale-pink, m.p. 98–100 °C. FT-IR (ATR) ῡ (cm−1): 1597, 1467, 1226, 1060. 1H NMR (DMSO-d6, 500 MHz) δ ppm: 7.71–8.02 (m, 4H, Ar–H), 7.36–7.61 (m, 2H, Ar–H), 7.04 (s, 1H, Ar–H), 6.32–6.52 (m, 2H, Ar–H), 4.89 (s, 2H, O–CH2–N), 4.26 (s, 2H, –Ar–CH2–N), 3.90 (s, 2H, furan- | 90 | |
| 2-(4-ethylphenyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Off-white solid, m.p. 43–46 °C. FT-IR (ATR) ῡ (cm−1): 1597, 1467, 1226, 1056. 1H NMR (Acetone-d6, 400 MHz) δ ppm: 7.80–7.85 (m, 2H, Ar–H), 7.69–7.71 (m, 1H, Ar–H), 7.50–7.55 (m, 1H, Ar–H), 7.35–7.40 (m, 1H, Ar–H), 6.99–7.14 (m, 5H, Ar–H), 5.49 (s, 2H, O-CH2-N), 5.00 (s, 2H, -Ar-CH2-N), 2.49–2.54 (m, 2H, | 89 | |
| 2-(4-methoxyphenyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine | Off-white solid, m.p. 76–78 °C FT-IR (ATR) ῡ (cm−1): 1596, 1467, 1246, 1230, 1031. 1H NMR (Acetone-d6, 400 MHz) /δ ppm: 7.80–7.82 (m, 2H, Ar–H), 7.70 (d, 1H, J = 8.8 Hz, Ar–H), 7.51 (m, 1H, Ar–H), 7.36 (m, 1H, Ar–H), 7.13 (d, 2H, J = 7.2 Hz, Ar–H), 7.00 (d, 1H, J = 8.8 Hz, Ar–H), 6.80 (d, 2H, J = 7.2 Hz, Ar–H), 5.42 (s, 2H, O-CH2-N), 4.93 (s, 2H, -Ar-CH2-N), 3.68 (s, 3H, O-CH3) | 92 |
Fig. 4Proposed mechanism for synthesis of 2-(aryl or alkyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine
Comparison between different methods for synthesis of 2-(aryl or alkyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine derivatives
| Entry | Conditions | Yield (%) | Refs. |
|---|---|---|---|
| Catalyst/Temp/Time/Solvent | |||
| 1 | Nano-Al2O3/BF3/Fe3O4/R.T/20 min/Water | 92 | [ |
| 2 | Fe3O4@nano-dextrin/Ti(IV)/R.T/7 min/Water | 95 | [ |
| Fe3O4@NCs/TiCl/R.T/3 min/solvent-free | 98 | [ | |
| 3 | Nano-Fe3O4@walnut shell/Cu(II)/60 °C/25 min/solvent-free | 93 | [ |
| 4 | GO-Fe3O4-Ti(IV)/60 °C/15 min/solvent-free | 97 | This work |
Fig. 5Recyclability of the GO-Fe3O4-Ti(IV) in the synthesis of
Fig. 6Comparison of the FT-IR spectrum of the GO-Fe3O4-Ti(IV) before (A) and after the recycling (B)
Fig. 7Effect of 2-(aryl or alkyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine derivatives on tonic at dose of 50 mg/kg (A) and 100 mg/kg (B) and myoclonic at dose of 50 mg/kg (C) and 100 mg/kg (D) seizure latency. Data are mean ± standard error of the mean of the latency time, (n = 6–8). *P < 0.05, **P < 0.01 and ***P < 0.001
Physicochemical properties of the 2-(aryl or alkyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine derivatives
| Compounds | MWa | LogPb | HBDc | HBAd | TPSA (A2) e | n-RBf | Lipinski violation |
|---|---|---|---|---|---|---|---|
| 340.21 | 4.37 | 0 | 1 | 12.47 | 1 | 1 | |
| 275.34 | 3.72 | 0 | 2 | 12.47 | 2 | 0 | |
| 267.37 | 3.72 | 0 | 2 | 12.47 | 1 | 0 | |
| 289.37 | 3.95 | 0 | 2 | 12.47 | 3 | 0 | |
| 261.32 | 3.75 | 0 | 1 | 12.47 | 1 | 0 | |
| 269.38 | 3.72 | 0 | 2 | 12.47 | 5 | 0 | |
| 275.34 | 3.99 | 0 | 1 | 12.47 | 1 | 1 | |
| 309.79 | 4.21 | 0 | 2 | 12.47 | 2 | 1 | |
| 265.31 | 2.41 | 0 | 3 | 25.61 | 2 | 0 | |
| 289.37 | 4.21 | 0 | 1 | 12.47 | 2 | 1 | |
| 291.34 | 3.37 | 0 | 2 | 21.7 | 2 | 0 | |
| 284.74 | 2.67 | 0 | 2 | 32.67 | 1 | 0 | |
| Rule of Lipinski | ≤ 500 | ≤ 5 | ≤ 5 | ≤ 10 | ≤ 140 | ≤ 10 | ≤ 1 |
a Molecular weight (MW); b Logarithm of partition coefficient between n-octanol and water (LogP); c Number of hydrogen bond donors (HBD); d Number of hydrogen bond acceptors (HBA); e Topological polar surface area (TPSA); f Number of rotatable bonds (nRB)
In silico ADME of the 2-(aryl or alkyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine derivatives
| Entry | Absorption | Distribution | |||
|---|---|---|---|---|---|
| % HIAa | In vitro Caco-2 cell permeability (nm s−1) | In vitro Skin permeability((log Kp, cm h − 1) | % In vitro plasma protein bonding | %BBBb | |
| 100 | 57.30 | − 2.68 | 100 | 2.27 | |
| 100 | 58.05 | − 2.7 | 83.88 | 2.02 | |
| 100 | 58.16 | − 3.07 | 83.09 | 4.07 | |
| 100 | 58.02 | − 2.56 | 86.52 | 1.67 | |
| 100 | 58.15 | − 2.74 | 91.96 | 2.07 | |
| 100 | 57.98 | − 2.49 | 87.68 | 4.67 | |
| 100 | 58.15 | − 2.66 | 92.29 | 3.22 | |
| 100 | 57.49 | − 2.75 | 86.65 | 1.87 | |
| 100 | 56.37 | − 3.33 | 82.78 | 2.86 | |
| 100 | 58.04 | − 2.49 | 94.16 | 4.41 | |
| 100 | 57.65 | − 2.96 | 92.59 | 0.37 | |
| 99.49 | 47.68 | − 3.07 | 98.74 | 2.58 | |
aHuman Intestinal Absorption; bIn vivo blood–brain barrier penetration
Fig. 9Interactions of (A) and (B) with the residues in the binding site of GABA-A receptor (orange: pi-sulfur, purple: pi-alkyl, green: van der Waals interaction)
Fig. 10Interactions of (A) and (B) with the residues in the binding site of GABA-A receptor
Fig. 8The full structure and binding pocket of GABA-A receptor (6X3X)
Fig. 11RMSD of the backbone of protein in complex with S, diazepam at 120 ns MD simulations
Fig. 12RMSF values of the backbone of protein over the simulation times
Fig. 13The radius of gyration (Rg) over the simulation time for and diazepam
Fig. 14Total number of H-bond count throughout the simulation time of and diazepam with GABA-A active site
Binding free energy components of and diazepam in complex with 6X3X pdb code GABA-A receptor
| System | Energy (Kcal/mol) ± SD | ||||
|---|---|---|---|---|---|
| VdWa | Elecb | Polar solvation | SASAc | Binding | |
| − 41.486 ± 2.277 | − 13.092 ± 3.363 | 3.451 ± 1.273 | − 4.722 ± 0.925 | − 37.168 ± 2.541 | |
| Diazepam | − 30.098 ± 2.923 | − 6.217 ± 3.154 | 2.631 ± 1.854 | − 4.064 ± 0.929 | − 27.350 ± 2.798 |
aVander walls; bElectrostatic energies; cSolvent Accessible Surface Area
Fig. 15Binding poses of the Diazepam (A) and (B) obtained from MD simulations