| Literature DB >> 35685215 |
Hua Xie1, Hui Yin2, Xue Ye2, Ying Liu2, Na Liu3, Yu Zhang4, Xiaoli Chen1, Xiaobo Chen2.
Abstract
Objective: 11β-Hydroxylase deficiency (11β-OHD) caused by mutations in the CYP11B1 gene is the second most common form of congenital adrenal hyperplasia. Both point mutations and genomic rearrangements of CYP11B1 are important causes of 11β-OHD. However, the high degree of sequence identity between CYP11B1 and its homologous gene CYP11B2, presents unique challenges for molecular diagnosis of suspected 11β-OHD. The aim of this study was to detect the point mutation, indel, small deletion of CYP11B1 and chimeric CYP11B2/CYP11B1 gene in a one-tube test, improving the genetic diagnosis of 11β-OHD.Entities:
Keywords: 11β-hydroxylase deficiency; chimeric CYP11B2/CYP11B1 gene; founder rearrangement; molecular diagnosis; small deletion
Mesh:
Substances:
Year: 2022 PMID: 35685215 PMCID: PMC9171383 DOI: 10.3389/fendo.2022.882863
Source DB: PubMed Journal: Front Endocrinol (Lausanne) ISSN: 1664-2392 Impact factor: 6.055
Clinical characteristics of three patients with 11β-OHD.
| Patient | Age | Sex of rearing | Karyotype | Height (cm) | Weight (kg) | Bone Age (y) | Blood pressure (mmHg) | Prader score, Penis (cm), Testis (ml) | Therapy |
|---|---|---|---|---|---|---|---|---|---|
| P1 | 6y | Male | 46, XY | 139 (+4.5SD) | 29.5 (+2.9SD) | 12.5 | 124/94 (>P99) | 5, 8, 8/8 | Hydrocortisone, Spironolactone |
| P2 | 2y | Female | 46, XX | 97 (+3.0SD) | 14.9 (+2.3SD) | 7 | 124/73 | 3, 2, - | Hydrocortisone |
| P3 | 11y | Male | 46, XY | 159 (+2.0SD) | 71.9 (+4.5SD) | 17 | 160/100 (>P99) | 5, 7, 6/6 | Hydrocortisone, Spironolactone, Captopril |
Biochemical characterization of three patients with 11β-OHD.
| Patient | K+ (mmol/l) | Na+ (mmol/l) | Cortisol (ug/dl) | ACTH (pg/ml) | T (nmol/l) | P (nmol/l) | LH (IU/l) | FSH (IU/l) | 17-OHP (ng/ml) | AD (nmol/l) | DHEA (ng/ml) | 11-deoxycortisol (pg/ml) | Aldosterone (pg/ml) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P1 | 3.45 | 144 | 2.33 | 496 | 17.49 | 6.55 | 0.29 (≤1.4) | 0.76 (≤3.1) | NA | NA | NA | NA | 14.9 |
| P2 | 3.27 | 145 | 2.59 | 433.9 | 8.57 | 6.93 | 0.25 (≤0.4) | 1.32 (≤7.6) | 10.77 | 69.29 (≤1.78) | 23.16 (1.2-6.3) | 198512.4 | 5.486 |
| P3* | 2.52 | 142 | 1.05 | 3 | 11.45 | 6.28 | 17.9 (≤7.8) | 14.49 (≤4.6) | 18.12 | 12.22 (≤7.71) | 15.18 (1.7-6.1) | 42176.1 | 42.88 |
| Reference value | 3.5-5.5 | 135-145 | 6.2-18.1 | 7.2-63.3 | ≤2.37 | ≤0.64 | – | – | 0.31-2.3 | – | – | <3440.0 | 30-160 |
*after treatment; NA, not available.
Figure 1Identification and characterization of rearrangements in three patients. (A–C) Sanger traces for CYP11B1-specific PCR products show the point mutation and indels in patient 1 (A), patient 2 (B), and patient 3 (C). (D–F) Sanger traces for breakpoint-specific PCR products for CYP11B1 rearrangements. They show the sequences around breakpoints in patient 1 (D), patient 2 (E) and patient 3 (F). Red lines indicate the location of genomic rearrangement. (G) Electrophoretogramof PCR products for the CYP11B1 rearrangements detected in three patients. Lanes 1–6: CYP11B2/CYP11B1 allele in patient 1, his father, his mother, carrier 1, carrier 2, and control, respectively. Lanes 7–10: CYP11B1 deletion fragment in patient 2, her father, her mother, and control, respectively. Lanes 11–14: The wild-type allele (green box) and the deletion allele (red box) of CYP11B1 in patient 3, his father, his mother, and the control, respectively.
Figure 2Detection of hemizygous intergenic/intragenic deletions in target sequencing data. (A–C) Intergenic/intragenic deletions in three patients. (A) Heterozygous deletion of exons 1-6 of CYP11B1 and exons 7-9 of CYP11B2 in patient 1 suggesting the chimeric CYP11B2/CYP11B1 gene. (B) Heterozygous deletion of exons 1-3 of CYP11B1 in patient 2. (C) Heterozygous deletion of exons 3-4 of CYP11B1 in patient 3. The x-axis represents the corresponding exons in CYP11B1 or CYP11B2. The y-axis shows the ratio of the mean coverage of the test sample to that of the control samples. (D, E) Misalignment information of split reads indicate the CYP11B1 rearrangements shown by IGV. (D) The red arrow indicates the breakpoint of chr8:143967846 in patient 2. (E) The red arrows indicate the breakpoint of chr8:143958084 and chr8:143958532 in patient 3.
Figure 3Nucleotide sequence alignment of the chimeric CYP11B2/CYP11B1 gene. Sequence alignment of CYP11B1 and CYP11B2, and the chimeric CYP11B2/CYP11B1 gene detected from patient 1, carrier 1 and carrier 2 in our study, patient 2 and patient 3 in Xu’s study, and the patient in Duan’s study using the online Clustal W method (http://www.ebi.ac.uk/Tools/msa/clustalo/). Red boxes indicate CYP11B2-specific SNPs, and green boxes indicate CYP11B1-specific SNPs. The red triangle represents a polymorphism in CYP11B2. The same breakpoint in four patients and two carriers is highlighted with the green star. The black horizontal lines represent the missing downstream sequences in the patient in Duan’s study.
Genetic characteristics of three patients with 11β-OHD.
| ID | Variation of | Inheritance | Size of Deletion | Sequence profile around breakpoints | Microhomology (Bases) |
|---|---|---|---|---|---|
| P1 | Deletion (chr8:143956945-143994517) | Maternal | 37.6kb | GGGAGCTCTTCTTC | 20 |
| NM_000497.3:c.1361G>A | Paternal | ||||
| P2 | Deletion (chr8:143958508-143967846) | Maternal | 9.3kb | GATTGGTATTGA | none |
| NM_000497.3:c.1391_1393delTGC | Paternal | ||||
| P3 | Deletion (chr8:143958084-143958532) | Maternal | 448bp | TGCAGT | 10 |
| NM_000497.3:c.1150_1153delCGAG | Paternal | ||||
Small letters are deleted sequences, capital letters on each side are remaining sequences, underlined nucleotides indicate microhomology, and bold italic nucleotides are complementary.