| Literature DB >> 35684257 |
Petra Gašparovičová1, Michal Ševčík2, Stanislav David1.
Abstract
Invasive species are now considered the second biggest threat for biodiversity and have adverse environmental, economic and social impacts. Understanding its spatial distribution and dynamics is crucial for the development of tools for large-scale mapping, monitoring and management. The aim of this study was to predict the distribution of invasive Fallopia taxa in Slovakia and to identify the most important predictors of spreading of these species. We designed models of species distribution for invasive species of Fallopia-Fallopia japonica-Japanese knotweed, Fallopia sachalinensis-Sakhalin knotweed and their hybrid Fallopia × bohemica-Czech knotweed. We designed 12 models-generalized linear model (GLM), generalized additive model (GAM), classification and regression trees (CART), boosted regression trees (BRT), multivariate adaptive regression spline (MARS), random forests (RF), support vector machine (SVM), artificial neural networks (ANN), maximum entropy (Maxent), penalized maximum likelihood GLM (GLMNET), domain, and radial basis function network (RBF). The accuracy of the models was evaluated using occurrence data for the presence and absence of species. The final simplified logistic regression model showed the three most important prediction variables lead by distances from roads and rails, then type of soil and distances from water bodies. The probability of invasive Fallopia species occurrence was evaluated using Pearson's chi-squared test (χ21). It significantly decreases with increasing distance from transport lines (χ21 = 118.85, p < 0.001) and depends on soil type (χ21 = 49.56, p < 0.001) and the distance from the water, where increasing the distance decrease the probability (χ21 = 8.95, p = 0.003).Entities:
Keywords: Fallopia taxa; invasive plants; species distribution model
Year: 2022 PMID: 35684257 PMCID: PMC9182903 DOI: 10.3390/plants11111484
Source DB: PubMed Journal: Plants (Basel) ISSN: 2223-7747
Accuracy evaluation statistics of models used for ensemble model.
| Method | AUC | COR | TSS | Deviance |
|---|---|---|---|---|
| glm | 0.90 | 0.63 | 0.7 | 0.75 |
| rf | 0.94 | 0.76 | 0.82 | 0.53 |
| maxent | 0.94 | 0.73 | 0.79 | 0.92 |
| glmnet | 0.92 | 0.55 | 0.77 | 2.78 |
| brt | 0.94 | 0.74 | 0.8 | 0.66 |
| svm | 0.92 | 0.69 | 0.76 | 0.65 |
| mars | 0.93 | 0.75 | 0.8 | 0.62 |
| rbf | 0.90 | 0.62 | 0.71 | 0.76 |
| gam | 0.93 | 0.73 | 0.79 | 0.87 |
| ranger | 0.94 | 0.75 | 0.81 | 0.52 |
Figure 1The ensemble prediction model of Fallopia species., with selected components and the uncertainty of a prediction. Selected components represent geomorphological units with relative homogenetic Fallopia species predictions.
Figure 2Ensemble model environment variable importance evaluated with Pearson.
Coefficient table of logistic regression model.
| Term | Estimate | Std. Error | Statistic | |
|---|---|---|---|---|
| (Intercept) | 2.24 | 0.417 | 5.39 | 7.21 × 10−8 *** |
| Distance from transport lines | −0.00222 | 0.000339 | −6.56 | 5.29 × 10−11 *** |
| Soil type: Fluvisols | 2.17 | 0.451 | 4.82 | 1.40 × 10−6 *** |
| Soil type: Haplic Luvisols | −1.25 | 0.570 | −2.20 | 2.81 × 10−2 * |
| Soil type: Leptosols | 0.203 | 0.848 | 0.239 | 8.11 × 10−1 |
| Soil type: Mollic Fluvisols and Mollic Gleysols | −0.363 | 0.611 | −0.594 | 5.52 × 10−1 |
| Soil type: Planosols and Stagnosols | 0.681 | 0.585 | 1.17 | 2.44 × 10−1 |
| Distance from water bodies | −0.000250 | 0.0000875 | −2.85 | 4.34 × 10−3 ** |
Statistically significant differences at: * p < 0.05; ** p < 0.01 and *** p < 0.001.
Figure 3Modelled probability of Fallopia spp. based on distance from transport lines, water bodies and different soil types. Water bodies distances represent 10% (red), 50% (blue) and 90% (green) percentile.
Figure 4Fallopia taxa occurance data used in analysis.
List of used environment variables with variable inflation factor (VIF).
| ID | Layer | Description | Type | VIF | Source |
|---|---|---|---|---|---|
| 1. | Transport_dist | Euclidean proximity map of roads and rails (range: 10,573 m; mean: 1159 ± 1190 m) | Continuous | 1.64 | Institute of Landscape Ecology of SAS |
| 2. | Aspect | Categorized aspect directions | Categorical ( | 1.01 | Derived from DEM |
| 3. | CLC | CORINE Land Cover 2018 (hierarchical 3-level CLC nomenclature) | Categorical ( | 1.44 | EEA (2018) |
| 4. | Landform | Type of slope landform | Categorical ( | 1.63 | Institute of Landscape Ecology of SAS |
| 5. | Soil_texture | Soil texture | Categorical ( | 1.08 | Institute of Landscape Ecology of SAS |
| 6. | Soil_type | Soil type | Categorical ( | 1.42 | Institute of Landscape Ecology of SAS |
| 7. | Rivers_dist | Euclidean proximity to rivers (range: 6937 m; mean: 348 ± 390 m) | Continuous | 1.25 | Institute of Landscape Ecology of SAS |
| 8. | DEM | Digital elevation model | Continuous | 4.08 | EEA (2018) |
| 9. | Slope | Surface slope (range: 76°; mean: 9 ± 8° m) | Continuous | 1.62 | Derived from DEM |
| 10. | Water_bodies_dist | Euclidean proximity map of waterbodies (range: 17,430 m; mean: 3228 ± 2219 m) | Continuous | 1.18 | Institute of Landscape Ecology of SAS |
| 11. | Min_temp_01 | Minimum temperature in January (range: 7 °C; mean: −8±1 °C) | Continuous | 2.42 | Fick and Hijmans, 2017 (WorldClim) |
| 12. | Precipitation | Precipitation (range: 1184 mm; mean: 734 ± 169 mm) | Continuous | 2.57 | Fick and Hijmans, 2017 (WorldClim) |