Literature DB >> 35682804

Transcriptional Basis of Psoriasis from Large Scale Gene Expression Studies: The Importance of Moving towards a Precision Medicine Approach.

Vidya S Krishnan1,2, Sulev Kõks1,2.   

Abstract

Transcriptome profiling techniques, such as microarrays and RNA sequencing (RNA-seq), are valuable tools for deciphering the regulatory network underlying psoriasis and have revealed large number of differentially expressed genes in lesional and non-lesional skin. Such approaches provide a more precise measurement of transcript levels and their isoforms than any other methods. Large cohort transcriptomic analyses have greatly improved our understanding of the physiological and molecular mechanisms underlying disease pathogenesis and progression. Here, we mostly review the findings of some important large scale psoriatic transcriptomic studies, and the benefits of such studies in elucidating potential therapeutic targets and biomarkers for psoriasis treatment. We also emphasised the importance of looking into the alternatively spliced RNA isoforms/transcripts in psoriasis, rather than focussing only on the gene-level annotation. The neutrophil and blood transcriptome signature in psoriasis is also briefly reviewed, as it provides the immune status information of patients and is a less invasive platform. The application of precision medicine in current management of psoriasis, by combining transcriptomic data, improves the clinical response outcome in individual patients. Drugs tailored to individual patient's genetic profile will greatly improve patient outcome and cost savings for the healthcare system.

Entities:  

Keywords:  S100 proteins; alternative transcripts; atopic dermatitis; keratinocytes; psoriasis; transcriptomics

Mesh:

Year:  2022        PMID: 35682804      PMCID: PMC9181806          DOI: 10.3390/ijms23116130

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   6.208


  89 in total

1.  Development and homeostasis of the skin epidermis.

Authors:  Panagiota A Sotiropoulou; Cedric Blanpain
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

2.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

3.  Sexy again: the renaissance of neutrophils in psoriasis.

Authors:  Michael P Schön; Sigrid M C Broekaert; Luise Erpenbeck
Journal:  Exp Dermatol       Date:  2017-02-27       Impact factor: 3.960

4.  Association analyses identify six new psoriasis susceptibility loci in the Chinese population.

Authors:  Liang-Dan Sun; Hui Cheng; Zai-Xing Wang; An-Ping Zhang; Pei-Guang Wang; Jin-Hua Xu; Qi-Xing Zhu; Hai-Sheng Zhou; Eva Ellinghaus; Fu-Ren Zhang; Xiong-Ming Pu; Xue-Qin Yang; Jian-Zhong Zhang; Ai-E Xu; Ri-Na Wu; Li-Min Xu; Lin Peng; Cynthia A Helms; Yun-Qing Ren; Chi Zhang; Shu-Mei Zhang; Rajan P Nair; Hong-Yan Wang; Guo-Shu Lin; Philip E Stuart; Xing Fan; Gang Chen; Trilokraj Tejasvi; Pan Li; Jun Zhu; Zhi-Ming Li; Hong-Mei Ge; Michael Weichenthal; Wen-Zheng Ye; Cheng Zhang; Song-Ke Shen; Bao-Qi Yang; Yuan-Yuan Sun; Shan-Shan Li; Yan Lin; Jian-Hua Jiang; Cun-Tao Li; Ri-Xin Chen; Juan Cheng; Xin Jiang; Peng Zhang; Wei-Min Song; Jin Tang; Hao-Qin Zhang; Li Sun; Jing Cui; Li-Jun Zhang; Biao Tang; Fei Huang; Qian Qin; Xiao-Ping Pei; Ai-Min Zhou; Li-Mei Shao; Jian-Lan Liu; Feng-Yu Zhang; Wei-Dong Du; Andre Franke; Anne M Bowcock; James T Elder; Jian-Jun Liu; Sen Yang; Xue-Jun Zhang
Journal:  Nat Genet       Date:  2010-10-17       Impact factor: 38.330

5.  The global, regional, and national burden of psoriasis in 195 countries and territories, 1990 to 2017: A systematic analysis from the Global Burden of Disease Study 2017.

Authors:  Sino Mehrmal; Prabhdeep Uppal; Natalie Nedley; Rachel L Giesey; Gregory R Delost
Journal:  J Am Acad Dermatol       Date:  2020-05-04       Impact factor: 11.527

6.  Interleukin-1alpha regulates antimicrobial peptide expression in human keratinocytes.

Authors:  Mika Bando; Yuka Hiroshima; Masatoshi Kataoka; Yasuo Shinohara; Mark C Herzberg; Karen F Ross; Toshihiko Nagata; Jun-ichi Kido
Journal:  Immunol Cell Biol       Date:  2007-06-05       Impact factor: 5.126

Review 7.  Exploring the Role of IL-36 Cytokines as a New Target in Psoriatic Disease.

Authors:  Helena Iznardo; Lluís Puig
Journal:  Int J Mol Sci       Date:  2021-04-21       Impact factor: 5.923

8.  Psoriasis-Specific RNA Isoforms Identified by RNA-Seq Analysis of 173,446 Transcripts.

Authors:  Sulev Kõks; Maris Keermann; Ene Reimann; Ele Prans; Kristi Abram; Helgi Silm; Gea Kõks; Kulli Kingo
Journal:  Front Med (Lausanne)       Date:  2016-10-07

9.  Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.

Authors:  Lam C Tsoi; Philip E Stuart; Chao Tian; Johann E Gudjonsson; Sayantan Das; Matthew Zawistowski; Eva Ellinghaus; Jonathan N Barker; Vinod Chandran; Nick Dand; Kristina Callis Duffin; Charlotta Enerbäck; Tõnu Esko; Andre Franke; Dafna D Gladman; Per Hoffmann; Külli Kingo; Sulev Kõks; Gerald G Krueger; Henry W Lim; Andres Metspalu; Ulrich Mrowietz; Sören Mucha; Proton Rahman; Andre Reis; Trilokraj Tejasvi; Richard Trembath; John J Voorhees; Stephan Weidinger; Michael Weichenthal; Xiaoquan Wen; Nicholas Eriksson; Hyun M Kang; David A Hinds; Rajan P Nair; Gonçalo R Abecasis; James T Elder
Journal:  Nat Commun       Date:  2017-05-24       Impact factor: 14.919

10.  RNA sequencing-based longitudinal transcriptomic profiling gives novel insights into the disease mechanism of generalized pustular psoriasis.

Authors:  Lingyan Wang; Xiaoling Yu; Chao Wu; Teng Zhu; Wenming Wang; Xiaofeng Zheng; Hongzhong Jin
Journal:  BMC Med Genomics       Date:  2018-06-05       Impact factor: 3.063

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  1 in total

Review 1.  Dermatologic Disease-Directed Targeted Therapy (D3T2): The Application of Biomarker-Based Precision Medicine for the Personalized Treatment of Skin Conditions-Precision Dermatology.

Authors:  Philip R Cohen; Razelle Kurzrock
Journal:  Dermatol Ther (Heidelb)       Date:  2022-09-19
  1 in total

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