| Literature DB >> 35677819 |
Aslam Khan1, Caroline Ichura1, Hannah Wang2, Izabela Rezende1, Malaya K Sahoo2, ChunHong Huang2, Daniel Solis2, Mamdouh Sibai2, Fumiko Yamamoto2, Sindiso Nyathi1, Bethel Bayrau1, Benjamin A Pinsky2,3, A Desiree LaBeaud1.
Abstract
Since March 2020, SARS-CoV-2 has plagued the world with COVID-19 and individuals of all ages have experienced varying symptoms of disease. Older adults were experiencing more severe disease compared to children and were prioritized by vaccination efforts. While biologic therapies and vaccinations were implemented, there were changes in public health restrictions with subsequent surges resulting in more infected children. During these surges there was a rise of different SARS-CoV-2 variants with the dominant variant initially alpha (B.1.1.7 and other Pango lineages) and epsilon (B.1.427/B.1.429) in early 2021 and a dramatic shift to delta (B.1.617.2 and other Pango lineages) by mid-summer 2021. In this study we aimed to characterize the clinical severity and host factors associated with disease by SARS-CoV-2 variant and evaluate if there are differences in disease severity by circulating variant. We retrospectively included all individuals 0-25 years of age who presented to our center and had a positive SARS-CoV-2 RT-PCR, SARS-CoV-2 variant mutation testing, and documented clinical notes from 1 January 2021 through 31 December 2021. We identified 745 individuals who met inclusion criteria and found the delta variant was associated with severe/critical disease compared to the other variants studied. The results of the model showed that underlying respiratory disease and diabetes were risk factors for progression to severe disease. These insights are important when evaluating public health measures and treatment options for children as more variants arise.Entities:
Keywords: COVID-19; SARS-COV-2 variants; SARS-CoV-2; pediatrics; severity; variants
Year: 2022 PMID: 35677819 PMCID: PMC9168367 DOI: 10.3389/fmed.2022.896352
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Characteristics of the patients at diagnosis by outcome.
|
|
|
|
|
|
| |
|---|---|---|---|---|---|---|
|
|
|
|
|
| ||
| Age (Median, IQR) | 12.8 (5.24–18.5) | 14.15 (5.92–20.6) | 18.73 (13.04–22.64) | 12.7 (4.92–17.2) | 14.14 (6.05–20.24) | |
| Gender | ||||||
| • Female | 67 (42.95) | 266 (52.47) | 25 (43.10) | 11 (45.83) | 0.136 | 369 (49.53) |
| • Male | 89 (57.05) | 241 (47.53) | 33 (56.90) | 13 (54.17) | 376 (50.47) | |
| Ethnicity | ||||||
| • Hispanic/Latino | 90 (57.69) | 230 (45.36) | 29 (50.00) | 14 (58.33) | – | 363 (48.72) |
| • Non-Hispanic | 63 (40.38) | 263 (51.87) | 29 (50.00) | 7 (29.17) | 362 (48.59) | |
| • Unknown | 3 (1.92) | 14 (2.76) | 0 () | 3 (12.50) | 20 (2.68) | |
| Race | ||||||
| • Caucasian | 34 (21.79) | 134 (26.43) | 21 (36.21) | 4 (16.67) | – | 193 (25.91) |
| • African American | 8 (5.13) | 30 (5.92) | 4 (6.90) | 0 () | 42 (5.64) | |
| • Asian /Pacific Islander/Native American | 12 (7.69) | 64 (12.62) | 4 (6.90) | 3 (12.5) | 83 (11.14) | |
| • Other/unknown | 102 (65.38) | 279 (55.03) | 29 (53.45) | 17 (70.83) | 427 (57.36) | |
| Body mass index | ||||||
| • Obese | 30 (27.78) | 118 (30.89) | 16 (34.78) | 8 (34.78) | ||
| • Non-Obese | 78 (72.22) | 264 (69.11) | 30 (65.22) | 15 (65.22) | ||
| Co-Morbidities | ||||||
| • Cardiovascular disease | 46 (29.49) | 105 (20.71) | 20 (34.48) | 12 (50) | 0.0005 | 183 (24.56) |
| • Respiratory disease | 62 (39.74) | 298 (58.78) | 40 (68.97) | 18 (75) | <0.0001 | 418 (56.11) |
| • Renal disease | 39 (25) | 129 (25.44) | 15 (25.86) | 9 (37.50) | 0.6143 | 192 (25.77) |
| • Immune system disease | 6 (3.85) | 23 (4.54) | 1 (1.72) | 4 (16.67) | 34 (4.56) | |
| • Malignancy | 5 (3.21) | 13 (2.56) | 0 () | 4 (16.67) | 22 (2.95) | |
| • Diabetes | 4 (2.56) | 9 (1.78) | 5 (8.62) | 2 (8.33) | 20 (2.68) | |
| SARS-CoV-2 variant | ||||||
| • Alpha | 9 (5.77) | 26 (5.13) | 2 (5.26) | 1 (2.63) | 38 (5.10) | |
| • Delta | 54 (34.62) | 319 (62.92) | 35 (8.22) | 18 (4.23) | 426 (57.18) | |
| • Epsilon | 42 (26.92) | 78 (60.94) | 8 (6.25) | 0 () | 128 (17.18) | |
| • Other | 51 (33.33) | 84 (54.90) | 13 (8.50) | 5 (3.27) | 153 (20.54) |
Characteristics of the Patients at diagnosis by exposure to different SARS-CoV-2 variants.
|
|
|
|
|
| ||
|---|---|---|---|---|---|---|
|
|
|
|
| |||
| Age (Median, IQR) | 16.9 (6.7–21.5) | 12.18 (4.8–19.7) | 16.7 (10.2–21.7) | 14.8 (7.4–19.8) | 14.14 (6.05–20.24) | |
| Gender | ||||||
| • Female | 19 (50.00) | 209 (49.06) | 64 (50.00) | 77 (50.33) | 0.9929 | 369 (49.53) |
| • Male | 19 (50.00) | 217 (50.94) | 64 (50.00) | 76 (49.67) | 376 (50.47) | |
| Ethnicity | ||||||
| • Hispanic | 11 (28.95) | 165 (38.73) | 84 (65.63) | 103 (67.32) | 363 (48.72) | |
| • Non-Hispanic | 25 (65.79) | 245 (57.51) | 43 (33.59) | 49 (32.03) | 362 (48.59) | |
| • Unknown | 2 (5.26) | 16 (3.76) | 1 (0.78) | 1 (0.65) | 20 (2.68) | |
| Race | ||||||
| • Caucasian | 9 (23.68) | 132 (30.99) | 23 (17.97) | 29 (18.95) | 193 (25.91) | |
| • African American | 7 (18.42) | 28 (6.57) | 2 (1.56) | 5 (3.27) | 42 (5.64) | |
| • Asian /Pacific Islander/Native American | 6 (15.79) | 51 (11.96) | 15 (11.72) | 11 (7.19) | 83 (11.14) | |
| • Other/unknown | 16 (42.1) | 215 (50.47) | 88 (68.75) | 108 (70.59) | 427 (57.36) | |
| Body mass index | ||||||
| • Obese | 11 (32.35) | 82 (24.92) | 40 (44.94) | 39 (36.45) | ||
| • Not obese | 23 (67.65) | 247 (75.08) | 49 (55.06) | 68 (63.55) | ||
| Co-morbidities | ||||||
| • Cardiovascular disease | 9 (23.68) | 90 (21.13) | 43 (33.59) | 41 (26.80) | 0.0324 | 183 (24.56) |
| • Respiratory disease | 24 (63.16) | 222 (52.11) | 78 (60.94) | 94 (61.44) | 0.0895 | 418 (56.11) |
| • Renal disease | 19 (50.00) | 97 (22.77) | 37 (28.91) | 39 (25.49) | 0.0025 | 192 (25.77) |
| • Immune system disease | 2 (5.26) | 18 (4.23) | 8 (6.25) | 6 (3.92) | 0.7686 | 34 (4.56) |
| • Malignancy | 0 () | 12 (2.82) | 6 (4.69) | 4 (2.61) | 22 (2.95) | |
| • Diabetes | 3 (7.89) | 9 (2.11) | 4 (3.13) | 4 (2.61) | 20 (2.68) | |
| Disease severity | ||||||
| • Asymptomatic | 9 (23.68) | 54 (12.68) | 42 (32.81) | 51 (33.33) | 156 (20.94) | |
| • Mild | 26 (68.42) | 319 (74.88) | 78 (60.94) | 84 (54.90) | 507 (68.05) | |
| • Moderate | 2 (5.26) | 35 (8.22) | 8 (6.25) | 13 (8.50) | 58 (7.79) | |
| • Severe | 1 (2.63) | 18 (4.23) | 0 () | 5 (3.27) | 24 (3.32) |
Unadjusted and adjusted odds ratios and confidence intervals for disease severity.
|
|
|
|
|
|
|---|---|---|---|---|
| Variant (Ref = Delta) | ||||
| • Alpha vs. Delta | 0.54 | 0.266–1.09 | 0.45 | 0.20–0.97 |
| • Epsilon vs. Delta | 0.354 | 0.233–0.538 | 0.25 | 0.15–0.43 |
| • Other vs. Delta | 0.410 | 0.276–0.609 | 0.43 | 0.26–0.70 |
| • Age | 1.025 | 1.005–1.045 | 1.03 | 1.01–1.05 |
| Race (ref = white) | ||||
| • Asian | 1.011 | 0.540–1.89 | 1.34 | 0.62–2.88 |
| • Black/African American | 0.83 | 0.41–1.69 | 0.98 | 0.39–2.46 |
| • Native American | 0.371 | 0.04–3.62 | 0.29 | 0.03–3.25 |
| • Other | 0.70 | 0.485–1.01 | 1.06 | 0.65–1.73 |
| • Pacific Islander | 1.02 | 0.40–2.61 | 1.86 | 0.66–5.31 |
| • Unknown | 2.1 | 0.746–5.94 | 6.94 | 0.61–79.53 |
| Gender (ref = male) | ||||
| • Female | 1.14 | 0.84–1.55 | 1.12 | 0.84–1.76 |
| Body mass index (ref = not obese) | ||||
| • Obese | 1.21 | 0.83–1.77 | 1.31 | 0.86–1.96 |
| Ethnicity (ref = Hispanic/Latino) | ||||
| • Non-Hispanic | 1.25 | 0.92–1.69 | 1.16 | 0.72–1.86 |
| • Unknown | 1.79 | 0.69–4.68 | 0.66 | 0.06–7.06 |
| Co-morbidities (ref = no disease) | ||||
| • Cardiovascular disease | 1.1 | 0.77–1.57 | 0.974 | 0.63–1.51 |
| • Respiratory disease | 2.23 | 1.63–3.06 | 1.96 | 1.31–2.93 |
| • Renal disease | 1.12 | 0.79–1.58 | 0.77 | 0.49–1.20 |
| • Immune system disease | 1.39 | 0.67–2.89 | 1.391 | 0.58–3.33 |
| • Diabetes | 2.84 | 1.13–7.16 | 2.22 | 0.83–5.96 |
| • Malignancy | 1.33 | 0.54–3.29 | 1.06 | 0.36–3.12 |
Adjusted for all other independent variables in the model.
Figure 1(A) Shows the absolute number of samples tested at our center in 2021 by month and included in the study. (B) Shows the monthly percentages of variant types from the positive test. Of note December does not reflect the Omicron variant which was prominent in the final week of December 2021.