Literature DB >> 35674943

Molecular Tools for Candida auris Identification and Typing.

Auke W de Jong1,2, Bert Gerrits van den Ende1, Ferry Hagen3,4,5.   

Abstract

Identification of Candida auris by conventional identification methodologies can be challenging. While whole genome sequencing is seen as the golden standard to genotype C. auris at an inter- and intraspecies level, it is costly and time-consuming. Sequencing the transcribed spacer (ITS) region and microsatellite typing provide simple, fast, and inexpensive alternatives for identification and genotyping of C. auris. Here we will describe both molecular approaches.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Candida auris; Genotyping; ITS sequencing; Microsatellite typing; Molecular epidemiology

Mesh：

Substances：

Year:  2022        PMID： 35674943     DOI： 10.1007/978-1-0716-2417-3_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Can Multidrug-Resistant Candida auris Be Reliably Identified in Clinical Microbiology Laboratories?

Authors:  Masako Mizusawa; Heather Miller; Rachel Green; Richard Lee; Mariann Durante; Rosalie Perkins; Caroline Hewitt; Patricia J Simner; Karen C Carroll; Randall T Hayden; Sean X Zhang
Journal:  J Clin Microbiol       Date:  2016-11-23       Impact factor: 5.948

3.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

Review 4.  Attack, Defend and Persist: How the Fungal Pathogen Candida auris was Able to Emerge Globally in Healthcare Environments.

Authors:  Auke W de Jong; Ferry Hagen
Journal:  Mycopathologia       Date:  2019-06-17       Impact factor: 2.574

5.  Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.

Authors:  Shawn R Lockhart; Kizee A Etienne; Snigdha Vallabhaneni; Joveria Farooqi; Anuradha Chowdhary; Nelesh P Govender; Arnaldo Lopes Colombo; Belinda Calvo; Christina A Cuomo; Christopher A Desjardins; Elizabeth L Berkow; Mariana Castanheira; Rindidzani E Magobo; Kauser Jabeen; Rana J Asghar; Jacques F Meis; Brendan Jackson; Tom Chiller; Anastasia P Litvintseva
Journal:  Clin Infect Dis       Date:  2016-10-20       Impact factor: 9.079

6.  Multidrug-Resistant Candida auris Misidentified as Candida haemulonii: Characterization by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and DNA Sequencing and Its Antifungal Susceptibility Profile Variability by Vitek 2, CLSI Broth Microdilution, and Etest Method.

Authors:  Shallu Kathuria; Pradeep K Singh; Cheshta Sharma; Anupam Prakash; Aradhana Masih; Anil Kumar; Jacques F Meis; Anuradha Chowdhary
Journal:  J Clin Microbiol       Date:  2015-03-25       Impact factor: 5.948

7.  International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database--the quality controlled standard tool for routine identification of human and animal pathogenic fungi.

Authors:  Laszlo Irinyi; Carolina Serena; Dea Garcia-Hermoso; Michael Arabatzis; Marie Desnos-Ollivier; Duong Vu; Gianluigi Cardinali; Ian Arthur; Anne-Cécile Normand; Alejandra Giraldo; Keith Cassia da Cunha; Marcelo Sandoval-Denis; Marijke Hendrickx; Angela Satie Nishikaku; Analy Salles de Azevedo Melo; Karina Bellinghausen Merseguel; Aziza Khan; Juliana Alves Parente Rocha; Paula Sampaio; Marcelo Ribeiro da Silva Briones; Renata Carmona e Ferreira; Mauro de Medeiros Muniz; Laura Rosio Castañón-Olivares; Daniel Estrada-Barcenas; Carole Cassagne; Charles Mary; Shu Yao Duan; Fanrong Kong; Annie Ying Sun; Xianyu Zeng; Zuotao Zhao; Nausicaa Gantois; Françoise Botterel; Barbara Robbertse; Conrad Schoch; Walter Gams; David Ellis; Catriona Halliday; Sharon Chen; Tania C Sorrell; Renaud Piarroux; Arnaldo L Colombo; Célia Pais; Sybren de Hoog; Rosely Maria Zancopé-Oliveira; Maria Lucia Taylor; Conchita Toriello; Célia Maria de Almeida Soares; Laurence Delhaes; Dirk Stubbe; Françoise Dromer; Stéphane Ranque; Josep Guarro; Jose F Cano-Lira; Vincent Robert; Aristea Velegraki; Wieland Meyer
Journal:  Med Mycol       Date:  2015-03-22       Impact factor: 4.076

8.  Potential Fifth Clade of Candida auris, Iran, 2018.

Authors:  Nancy A Chow; Theun de Groot; Hamid Badali; Mahdi Abastabar; Tom M Chiller; Jacques F Meis
Journal:  Emerg Infect Dis       Date:  2019-09-17       Impact factor: 6.883

9.  Development of Candida auris Short Tandem Repeat Typing and Its Application to a Global Collection of Isolates.

Authors:  Theun de Groot; Ynze Puts; Indira Berrio; Anuradha Chowdhary; Jacques F Meis
Journal:  mBio       Date:  2020-01-07       Impact factor: 7.867
  9 in total

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