| Literature DB >> 35674181 |
Yiwen Lu1, Qiuqin Tang2, Shanshan Yang3, Yuting Cheng1, Mei Li1, Dan Guo1, Ziqiang Fu1, Hua Jiang2, Wei Wu1.
Abstract
Macrosomia is a common perinatal complication, with a series of adverse effects on newborns and pregnant women. However, the effects of long non‑coding RNAs (lncRNAs) on non‑diabetic fetal macrosomia (NDFMS) remain unclear. The aim of the present study was to investigate whether aberrant lncRNA expression in the placenta is involved in the pathogenesis of NDFMS and to elucidate its biological mechanisms. The expression profile of lncRNAs in the placentas of pregnant women with NDFMS was investigated using an Agilent Human LncRNA Microarray. Differentially expressed lncRNAs were selected for validation using reverse transcription‑quantitative polymerase chain reaction (RT‑qPCR). Additionally, the function of lncRNA ubiquitin‑specific peptidase 2 antisense RNA 1 (USP2‑AS1) was investigated using a trophoblast cell line. The results revealed that 763 lncRNAs were upregulated and 129 lncRNAs were downregulated in the placentas of women in the NDFMS group (|FC| ≥2.0). A total of 10 lncRNAs (|FC| ≥4.0, signal value ≥50) were selected for validation using two‑stage RT‑qPCR, indicating that the expression trends of the 10 differentially expressed lncRNAs in the NDFMS group (n=8 vs. 8 and 48 vs. 48) were consistent with the microarray data. In addition, a significant downregulation in the levels of lncRNA USP2‑AS1 was observed in both the microarray data and second‑stage verification. The overexpression of lncRNA USP2‑AS1 induced G1 phase cell cycle arrest and the number of cells entering S phase was reduced. In addition, the viability of HTR‑8/SVneo cells was significantly inhibited when lncRNA USP2‑AS1 was overexpressed. Therefore, these findings demonstrated that lncRNAs were significantly differentially expressed in the placentas of pregnant women with NDFMS and that the downregulation of lncRNA USP2‑AS1 may be involved in the pathogenesis of NDFMS, by promoting trophoblast cell viability.Entities:
Keywords: birth weight; expression profile; lncRNA USP2‑AS1; macrosomia; placenta
Mesh:
Substances:
Year: 2022 PMID: 35674181 PMCID: PMC9218729 DOI: 10.3892/mmr.2022.12766
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 3.423
Sequences of primers for lncRNAs used in RT-qPCR.
| lncRNA ID | Gene symbol | Primers | Sequences (5′-3′) |
|---|---|---|---|
| ENST00000580048.1 |
| Forward | TCACATCCCATGGCCAGAAG |
| Reverse | GCCACAGGTAGAGCTGACAC | ||
| ENST00000453774.1 |
| Forward | GGCCATGGCTTCAACTAGACT |
| Reverse | AGAAAAGGAAGTGAGCACGGG | ||
| ENST00000604250.1 |
| Forward | TGCAAGAGCATGTGGGTCAA |
| Reverse | ACTCCCAGCCACTATGCATTC | ||
| NR_002791.2 |
| Forward | ACGATCCACTCCCTGGTACA |
| Reverse | CGGAAAAGGGTTGGTGCAAG | ||
| uc011fns.2 |
| Forward | AAGCCACCCAGCTACCTAATTC |
| Reverse | ACATTTCTGAGCCAAAGGCAGAG | ||
| NR_034160.1 |
| Forward | GGAACTCACAACACACGGGA |
| Reverse | TTGCACAAGATGACAGGGCT | ||
| HIT000332651 |
| Forward | AGAGTGTGAGACCTGTGGAG |
| Reverse | CAACAAGTTCGTGACCGTGC | ||
| LIT3502 |
| Forward | ATGAAGGTGGCCTGGGTAGA |
| Reverse | TCCCATGTACTCTATAAGCAGCTC | ||
| TCONS_00001644 |
| Forward | GAAACACGACGGGGGACTTA |
| Reverse | AAGGTCCATCGGATTCCACA | ||
| ENST00000587085.1 |
| Forward | TCTAAGCCCTGGTGAATGCTG |
| Reverse | AGTGTGTCCTGAACCCCATT | ||
|
| Forward | GCACCGTCAAGGCTGAGAAC | |
| Reverse | GGATCTCGCTCCTGGAAGATG |
lncRNA, long non-coding RNA; RT-qPCR, reverse transcription-quantitative PCR.
Clinical characteristics of the study population.
| Characteristic | Control (n=48) | NDFMS (n=48) | P-values |
|---|---|---|---|
| Maternal age (years) | 26.33±2.68 | 26.88±3.27 | 0.69 |
| Gestational age (weeks) | 39.66±1.01 | 39.74±0.95 | 0.63 |
| Pre-pregnant BMI (kg/m2) | 20.06±2.64 | 21.21±3.90 | 0.08 |
| Gravidity | 1.25±0.60 | 1.34±0.73 | 0.51 |
| Pregnant weight gain (kg) | 16.84±4.11 | 19.83±4.89 | 0.002 |
| Placental weight (g) | 593.33±102.31 | 760.73±124.14 | <0.001 |
| Birth weight (g) | 3322.29±309.60 | 4238.04±235.86 | <0.001 |
| Infant sex, n (%) | 0.008 | ||
| Male | 21 (43.75) | 34 (70.83) | |
| Female | 27 (56.25) | 14 (29.17) |
Values are the mean ± SD. NDFMS, non-diabetic fetal macrosomia; BMI, body mass index.
Figure 1.Differentially expressed lncRNAs in placental tissues of women in the NDFMS group compared with the control group examined using lncRNA microarray detection. (A) Scatter plot of changes in placental lncRNA expression in the NDFMS and control group. The values displayed on the x- and y-axis of the scatter plot are the normalized signal values of each sample (log2 scale). The blue line represents the fold change (given the default fold change value is 2.0). The red markers above the top blue line represent upregulated lncRNAs, and the green markers below the bottom blue line represent downregulated lncRNAs. (B) Clustering heatmap of differentially expressed lncRNAs. Colors represent lncRNA relative expression levels (red, higher; green, lower). (C) Classification of genomic locations of differentially expressed lncRNAs. (D) The chromosome distribution of upregulated and downregulated lncRNAs in the NDFMS group. lncRNA, long non-coding RNA; NDFMS, non-diabetic fetal macrosomia.
The top 10 upregulated and downregulated lncRNAs in NDFMS, compared with the control.
| lncRNA ID | Gene symbol | FC[ | Regulation | Chromosome |
|---|---|---|---|---|
| HIT000075832 |
| 9.19 | Up | 7 |
| ENST00000567862.1 |
| 7.31 | Up | 16 |
| TCONS_00007242 |
| 6.64 | Up | 3 |
| HIT000067251 |
| 6.32 | Up | 2 |
| ENST00000430463.1 |
| 4.87 | Up | 22 |
| uc011fns.2 |
| 4.80 | Up | 6 |
| TCONS_00006281 |
| 4.80 | Up | 3 |
| ENST00000503357.1 |
| 4.78 | Up | 3 |
| ENST00000433249.1 |
| 4.60 | Up | 10 |
| uc021vkt.1 |
| 4.54 | Up | 2 |
| ENST00000513672.1 |
| −11.48 | Down | 1 |
| ENST00000607437.1 |
| −10.41 | Down | 2 |
| ENST00000415714.1 |
| −9.81 | Down | 6 |
| ENST00000610239.1 |
| −9.00 | Down | 4 |
| ENST00000594455.1 |
| −8.94 | Down | 1 |
| ENST00000564381.1 |
| −8.17 | Down | 16 |
| ENST00000598737.1 |
| −7.87 | Down | 2 |
| TCONS_00001693 |
| −7.02 | Down | 1 |
| ENST00000433965.1 |
| −6.87 | Down | 6 |
| ENST00000580048.1 |
| −6.58 | Down | 18 |
FC, fold change; positive numbers represent upregulation and negative numbers represent downregulation. lncRNAs, long non-coding RNAs; NDFMS, non-diabetic fetal macrosomia.
List of differentially expressed lncRNAs in the Agilent Human LncRNA Microarray results.
| lncRNA ID[ | Gene symbol | FC[ | Regulation |
|---|---|---|---|
| ENST00000580048.1 |
| −6.58 | Down |
| RNA147334|p0438_imsncRNA843 | Null | −6.41 | Down |
| ENST00000453774.1 |
| −5.36 | Down |
| ENST00000604250.1 |
| −5.21 | Down |
| NR_002791.2 |
| −4.96 | Down |
| uc011fns.2 |
| 4.80 | Up |
| NR_034160.1 |
| −4.73 | Down |
| LIT3501 |
| −4.71 | Down |
| HIT000332651 |
| −4.68 | Down |
| LIT3502 |
| −4.60 | Down |
| TCONS_00001644 |
| −4.34 | Down |
| ENST00000587085.1 |
| −4.22 | Down |
Signal value is >50.
FC, Fold change; positive numbers represent upregulation and negative numbers represent downregulation; their absolute values are >4. lncRNAs, long non-coding RNAs; NDFMS, non-diabetic fetal macrosomia.
Expression of lncRNAs in 8 placental tissues of women in the NDFMS and control group.
| Gene symbol | Control (n=8) | NDFMS (n=8) | P-value |
|---|---|---|---|
|
| 0.104±0.074 | 0.031±0.008 | 0.172 |
|
| 0.115±0.054 | 0.141±0.026 | 0.142 |
|
| 0.155±0.070 | 0.110±0.029 | 0.208 |
|
| 0.115±0.045 | 0.087±0.057 | 0.600 |
|
| 0.002±0.002 | 0.034±0.011 | 0.0008 |
|
| 0.344±0.416 | 0.087±0.018 | 0.002 |
|
| 0.00006±0.00002 | 0.00009±0.00004 | 0.075 |
|
| 0.0007±0.001 | 0.00007±0.00003 | 0.916 |
|
| 0.109±0.57 | 0.064±0.016 | 0.093 |
|
| 0.122±0.023 | 0.105±0.024 | 0.093 |
Values are the mean ± SD. lncRNAs, long non-coding RNAs; NDFMS, non-diabetic fetal macrosomia.
Figure 2.Verification results of expression levels of lncRNAs in the placental tissues of women in the NDFMS group and control group. Expression levels of 10 lncRNAs in placental tissues of women in the NDFMS group and control group: (A) ENSG00000264247.1, (B) ENSG00000228262.2 (lncRNA ID: ENST00000453774.1), (C) ENSG00000228262.4, (D) EMX2OS, (E) HLA-DQA1, (F) USP2-AS1, (G) HIX0040474, (H) LIT3502, (I) XLOC_000983, (J) ENSG00000228262.2 (lncRNA ID: ENST00000587085.1). *P<0.05, **P<0.01, ***P<0.001, vs. the control group. lncRNA, long non-coding RNA; NDFMS, non-diabetic fetal macrosomia.
Figure 3.Effects of lncRNA USP2-AS1 overexpression on the cell cycle, viability and apoptosis of HTR-8/SVneo cells. (A) Verification of lncRNA USP2-AS1 transfection efficiency in HTR-8/SVneo cells. (B) Effect of lncRNA USP2-AS1 overexpression on cell cycle of HTR-8/SVneo cells. (C) Effect of lncRNA USP2-AS1 overexpression on the viability of HTR-8/SVneo cells. (D) Effect of lncRNA USP2-AS1 overexpression on the apoptosis of HTR-8/SVneo cells. The control in Fig. 3A is an empty vector. *P<0.05, **P<0.01, ***P<0.001.