| Literature DB >> 35663265 |
Wen-Jun Bian1, Zong-Jun Li1, Jie Wang1, Sheng Luo1, Bing-Mei Li1, Liang-Di Gao1, Na He1, Yong-Hong Yi1.
Abstract
Objective: SHROOM4 gene encodes an actin-binding proteins, which plays an important role in cytoskeletal architecture, synaptogenesis, and maintaining gamma-aminobutyric acid receptors-mediated inhibition. SHROOM4 mutations were reported in patients with the Stocco dos Santos type of X-linked syndromic intellectual developmental disorder (SDSX; OMIM# 300434). In this study, we investigated the association between SHROOM4 and epilepsy.Entities:
Keywords: SHROOM4 gene; epilepsy; genotype-phenotype correlation; intellectual disability; sub-regional effect; whole-exome sequencing
Year: 2022 PMID: 35663265 PMCID: PMC9157246 DOI: 10.3389/fnmol.2022.862480
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 6.261
FIGURE 1Genetic data of cases with SHROOM4 variants. (A) Pedigrees of the six cases with SHROOM4 mutations and their corresponding phenotypes. (B) DNA sequence chromatogram of the SHROOM4 mutations. Arrows indicate the positions of the mutations. (C) The amino acid sequence alignment of the six missense mutations shows that the residues Pro5, Glu1079, Ser1194, Arg1430, Val1435, and Pro1444 are highly conserved across species.
Clinical features of the individuals with SHROOM4 variants.
| Case | Variants (NM_020717.5) | Gender | Age | Seizure onset | Seizure course | Effective AEDs | Seizure-free duration | EEG | Brain MRI | Development | Diagnosis |
| Case 1 | c.13C > A/p.Pro5Thr | Male | 9 yr | 7 yr | Absence, 4-5 times/day | VPA | 1 yr | 3 Hz generalized spike-slow waves | Normal | Normal | CAE |
| Case 2 | c.3236A > C/p.Glu1079Ala | Male | 11 yr | 7 yr | GTCS, 2 times in 2 years | LTG | 3 yr | Bilateral central-temporal independent sharp waves and spikes | Normal | Normal | BECTS |
| Case 3 | c.3581C > T/p.Ser1194Leu | Male | 16 yr | 3 yr | Tonic seizure, 4-5 times/day in the first three years, CPS 1-2 times/month | VPA,OXC,CNZ | 2 yr | Childhood: not available Present: generalized slow waves and left temporal spike-slow waves | Normal | Normal | LGS |
| Case 4 | c.4288C > T/p.Arg1430Cys | Male | 17 yr | 16 yr | GTCS 1-2 times/month | VPA | 1 yr | Irregular generalized spike-slow waves | Normal | Normal | IGE |
| Case 5 | c.4303G > A/p.Val1435Met | Male | 5 yr | 4 yr | Myoclonic seizure, 5-6 times/day | LTG | 2 yr | Irregular polyspike-slow waves and bilateral temporal independent spike-slow waves | Normal | Normal | CME |
| Case 6 | c.4331C > T/p.Pro1444Leu | Male | 17 yr | 3 yr | GTCS or CPS 2-3 times/day | VPA,OXC | 1.5 yr | Right predominant generalized spike-slow waves, bilateral temporal independent spike-slow waves Ictal: GTCS with generalized origination | Normal | Normal | IPE |
AEDs, antiepileptic drugs; BECTS, benign childhood epilepsy with centrotemporal EEG spikes; CAE, childhood absence epilepsy; CME: Childhood myoclonic epilepsy; CPS, complex partial seizure; EEG, electroencephalogram; GTCS, generalized tonic-clonic seizure; LGS, Lennox-Gastaut syndrome; LTG, lamotrigine; MRI, magnetic resonance imaging; IGE, idiopathic generalized epilepsy; IPE, idiopathic partial epilepsy; VPA, valproate.
Analysis of the aggregate frequency of SHROOM4 variants identified in this study.
| Variants (NM_020717.5) | Position | Allele count/number in hemizygotes in this study (%) | Allele count/number in hemizygotes of gnomAD-all populations (%) | Allele Count/number in hemizygotes in controls of gnomAD-all populations (%) | Allele Count/number in hemizygotes of gnomAD-East Asian populations (%) | Allele Count/Number in the controls of gnomAD-East Asian populations (%) |
| c.13C > A/p.Pro5Thr | chrX:50557006 | 1/448 (0.2232) | - | - | - | - |
| c.3236A > C/p.Glu1079Ala | chrX:50350906 | 1/448 (0.2232) | - | - | - | - |
| c.3581C > T/p.Ser1194Leu | chrX:50350561 | 1/448 (0.2232) | 1/204,757 | 1/87,776 | - | - |
| c.4288C > T/p.Arg1430Cys | chrX:50339889 | 1/448 (0.2232) | 1/180,876 | - | - | - |
| c.4303G > A/p.Val1435Met | chrX:50339874 | 1/448 (0.2232) | - | - | - | - |
| c.4331C > T/p.Pro1444Leu | chrX:50339846 | 1/448 (0.2232) | 0/181,847 | 0/79,656 | - | - |
| Total | 6/448 (1.3392) | 2/180,876 | 1/79,656 | 0/13,792 | 0/6,901 | |
| 6.134 × 10–15 | 4.273 × 10–13 | 9.386 × 10–10 | 9.462 × 10–8 | |||
| OR | 1,227.652 | 1,081.289 | 405.203 | 202.756 | ||
| (95%CI) | (247.11−6,099.01) | (129.91−8,999.96) | (22.72−7,225.75) | (11.37−3,615.63) |
p values and odds ratio were estimated with 2-sided Fisher’s exact test.
CI, confidence interval; gnomAD, Genome Aggregation Database; OR, odd ratio.
FIGURE 2Changes of interictal EEGs and MRI in the cases with SHROOM4 variants. (A) Interictal EEG of case 1 showed 3 Hz generalized spike-slow waves (obtained at the age of 7 years). (B) Interictal EEG of case 2 showed bilateral central-temporal independent sharp waves and spikes (obtained at the age of 7 years). (C) Interictal EEG of case 3 showed generalized slow waves and left temporal spike-slow waves (obtained at the age of 14 years). (D) Interictal EEG of case 4 showed irregular generalized spike-slow waves (obtained at the age of 16 years). (E) Interictal EEG of case 5 showed irregular polyspike-slow waves and bilateral temporal independent spike-slow waves (obtained at the age of 4 years). (F) Interictal EEG of case 6 showed right predominant generalized spike-slow waves, bilateral temporal independent spike-slow waves (obtained at the age of 3 years).
FIGURE 3Schematic illustration of SHROOM4 variants. (A) Linear schematic of missense SHROOM4 mutations and their locations on SHROOM4 protein. Mutations associated with epilepsy were shown in red color. Mutations associated with ID were shown in blue. ΔThe mutation was found in this study (B) Changes of hydrogen bonds and free energy change value (DDG) of the mutations. (C) The proportion of missense mutations in epilepsy and ID. *The proportion of missense mutations in epilepsy is significantly higher than that in ID.