Literature DB >> 35654808

Dysregulation of microRNAs and tRNA-derived ncRNAs in mesothelial and mesothelioma cell lines after asbestiform fiber exposure.

Alfredo Pulvirenti1, Carla Loreto2, Veronica Filetti2, Alessandro La Ferlita1,3, Antonio Di Maria1, Venera Cardile4, Adriana C E Graziano4, Venerando Rapisarda5, Caterina Ledda6.   

Abstract

Experimental evidence demonstrated that fluoro-edenite (FE) can develop chronic respiratory diseases and elicit carcinogenic effects. Environmental exposure to FE fibers is correlated with malignant pleural mesothelioma (MPM). An early diagnosis of MPM, and a comprehensive health monitoring of the patients exposed to FE fibers are two clinical issues that may be solved by the identification of specific biomarkers. We reported the microRNA (miRNA) and transfer RNA-derived non coding RNA (tRNA-derived ncRNA) transcriptome in human normal mesothelial and malignant mesothelioma cell lines exposed or not exposed to several concentration FE fibers. Furthermore, an interactive mesothelioma-based network was derived by using NetME tool. In untreated condition, the expression of miRNAs and tRNA-derived ncRNAs in tumor cells was significantly different with respect to non-tumor samples. Moreover, interesting and significant changes were found after the exposure of both cells lines to FE fibers. The network-based pathway analysis showed several signaling and metabolic pathways potentially involved in the pathogenesis of MPM. From papers analyzed by NetME, it is clear that many miRNAs can positively or negatively influence various pathways involved in MPM. For the first time, the analysis of tRNA-derived ncRNAs molecules in the context of mesothelioma has been made by using in vitro systems. Further studies will be designed to test and validate their diagnostic potential in high-risk individuals' liquid biopsies.
© 2022. The Author(s).

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Year:  2022        PMID: 35654808      PMCID: PMC9163335          DOI: 10.1038/s41598-022-13044-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.996


  102 in total

1.  Vascular endothelial growth factor is an autocrine growth factor in human malignant mesothelioma.

Authors:  L Strizzi; A Catalano; G Vianale; S Orecchia; A Casalini; G Tassi; R Puntoni; L Mutti; A Procopio
Journal:  J Pathol       Date:  2001-04       Impact factor: 7.996

2.  Mesothelioma in Cyprus: the role of tremolite.

Authors:  K McConnochie; L Simonato; P Mavrides; P Christofides; F D Pooley; J C Wagner
Journal:  Thorax       Date:  1987-05       Impact factor: 9.139

3.  Accelerated collagen-induced arthritis in IFN-gamma receptor-deficient mice.

Authors:  K Vermeire; H Heremans; M Vandeputte; S Huang; A Billiau; P Matthys
Journal:  J Immunol       Date:  1997-06-01       Impact factor: 5.422

4.  Restoring expression of miR-16: a novel approach to therapy for malignant pleural mesothelioma.

Authors:  G Reid; M E Pel; M B Kirschner; Y Y Cheng; N Mugridge; J Weiss; M Williams; C Wright; J J B Edelman; M P Vallely; B C McCaughan; S Klebe; H Brahmbhatt; J A MacDiarmid; N van Zandwijk
Journal:  Ann Oncol       Date:  2013-10-22       Impact factor: 32.976

5.  Deep Sequencing of Serum Small RNAs Identifies Patterns of 5' tRNA Half and YRNA Fragment Expression Associated with Breast Cancer.

Authors:  Joseph M Dhahbi; Stephen R Spindler; Hani Atamna; Dario Boffelli; David Ik Martin
Journal:  Biomark Cancer       Date:  2014-12-08

Review 6.  Diagnostic value of microRNAs in asbestos exposure and malignant mesothelioma: systematic review and qualitative meta-analysis.

Authors:  Luigina Micolucci; Most Mauluda Akhtar; Fabiola Olivieri; Maria Rita Rippo; Antonio Domenico Procopio
Journal:  Oncotarget       Date:  2016-09-06

7.  MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data.

Authors:  Phillipe Loher; Aristeidis G Telonis; Isidore Rigoutsos
Journal:  Sci Rep       Date:  2017-02-21       Impact factor: 4.379

8.  Autophagy is a gatekeeper of hepatic differentiation and carcinogenesis by controlling the degradation of Yap.

Authors:  Youngmin A Lee; Luke A Noon; Kemal M Akat; Maria D Ybanez; Ting-Fang Lee; Marie-Luise Berres; Naoto Fujiwara; Nicolas Goossens; Hsin-I Chou; Fatemeh P Parvin-Nejad; Bilon Khambu; Elisabeth G M Kramer; Ronald Gordon; Cathie Pfleger; Doris Germain; Gareth R John; Kirk N Campbell; Zhenyu Yue; Xiao-Ming Yin; Ana Maria Cuervo; Mark J Czaja; M Isabel Fiel; Yujin Hoshida; Scott L Friedman
Journal:  Nat Commun       Date:  2018-11-23       Impact factor: 17.694

9.  PubChem Substance and Compound databases.

Authors:  Sunghwan Kim; Paul A Thiessen; Evan E Bolton; Jie Chen; Gang Fu; Asta Gindulyte; Lianyi Han; Jane He; Siqian He; Benjamin A Shoemaker; Jiyao Wang; Bo Yu; Jian Zhang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2015-09-22       Impact factor: 16.971

Review 10.  tRNA-Derived Small RNA: A Novel Regulatory Small Non-Coding RNA.

Authors:  Siqi Li; Zhengping Xu; Jinghao Sheng
Journal:  Genes (Basel)       Date:  2018-05-10       Impact factor: 4.096

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