Literature DB >> 35652115

MIMIR: Deep Regression for Automated Analysis of UK Biobank MRI Scans.

Taro Langner1, Andrés Martínez Mora1, Robin Strand1, Håkan Ahlström1, Joel Kullberg1.   

Abstract

UK Biobank (UKB) has recruited more than 500 000 volunteers from the United Kingdom, collecting health-related information on genetics, lifestyle, blood biochemistry, and more. Ongoing medical imaging of 100 000 participants with 70 000 follow-up sessions will yield up to 170 000 MRI scans, enabling image analysis of body composition, organs, and muscle. This study presents an experimental inference engine for automated analysis of UKB neck-to-knee body 1.5-T MRI scans. This retrospective cross-validation study includes data from 38 916 participants (52% female; mean age, 64 years) to capture baseline characteristics, such as age, height, weight, and sex, as well as measurements of body composition, organ volumes, and abstract properties, such as grip strength, pulse rate, and type 2 diabetes status. Prediction intervals for each end point were generated based on uncertainty quantification. On a subsequent release of UKB data, the proposed method predicted 12 body composition metrics with a 3% median error and yielded mostly well-calibrated individual prediction intervals. The processing of MRI scans from 1000 participants required 10 minutes. The underlying method used convolutional neural networks for image-based mean-variance regression on two-dimensional representations of the MRI data. An implementation was made publicly available for fast and fully automated estimation of 72 different measurements from future releases of UKB image data. Keywords: MRI, Adipose Tissue, Obesity, Metabolic Disorders, Volume Analysis, Whole-Body Imaging, Quantification, Supervised Learning, Convolutional Neural Network (CNN) © RSNA, 2022.
© 2022 by the Radiological Society of North America, Inc.

Entities:  

Keywords:  Adipose Tissue; Convolutional Neural Network (CNN); MRI; Metabolic Disorders; Obesity; Quantification; Supervised Learning; Volume Analysis; Whole-Body Imaging

Year:  2022        PMID: 35652115      PMCID: PMC9152682          DOI: 10.1148/ryai.210178

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  12 in total

1.  A Guideline of Selecting and Reporting Intraclass Correlation Coefficients for Reliability Research.

Authors:  Terry K Koo; Mae Y Li
Journal:  J Chiropr Med       Date:  2016-03-31

2.  Uncertainty-aware body composition analysis with deep regression ensembles on UK Biobank MRI.

Authors:  Taro Langner; Fredrik K Gustafsson; Benny Avelin; Robin Strand; Håkan Ahlström; Joel Kullberg
Journal:  Comput Med Imaging Graph       Date:  2021-09-23       Impact factor: 4.790

3.  Algorithms for the Capture and Adjudication of Prevalent and Incident Diabetes in UK Biobank.

Authors:  Sophie V Eastwood; Rohini Mathur; Mark Atkinson; Sinead Brophy; Cathie Sudlow; Robin Flaig; Simon de Lusignan; Naomi Allen; Nishi Chaturvedi
Journal:  PLoS One       Date:  2016-09-15       Impact factor: 3.240

4.  Characterisation of liver fat in the UK Biobank cohort.

Authors:  Henry R Wilman; Matt Kelly; Steve Garratt; Paul M Matthews; Matteo Milanesi; Amy Herlihy; Micheal Gyngell; Stefan Neubauer; Jimmy D Bell; Rajarshi Banerjee; E Louise Thomas
Journal:  PLoS One       Date:  2017-02-27       Impact factor: 3.240

Review 5.  The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions.

Authors:  Paul M Matthews; Naomi E Allen; Thomas J Littlejohns; Jo Holliday; Lorna M Gibson; Steve Garratt; Niels Oesingmann; Fidel Alfaro-Almagro; Jimmy D Bell; Chris Boultwood; Rory Collins; Megan C Conroy; Nicola Crabtree; Nicola Doherty; Alejandro F Frangi; Nicholas C Harvey; Paul Leeson; Karla L Miller; Stefan Neubauer; Steffen E Petersen; Jonathan Sellors; Simon Sheard; Stephen M Smith; Cathie L M Sudlow
Journal:  Nat Commun       Date:  2020-05-26       Impact factor: 14.919

6.  Brain age prediction using deep learning uncovers associated sequence variants.

Authors:  B A Jonsson; G Bjornsdottir; T E Thorgeirsson; L M Ellingsen; G Bragi Walters; D F Gudbjartsson; H Stefansson; K Stefansson; M O Ulfarsson
Journal:  Nat Commun       Date:  2019-11-27       Impact factor: 14.919

7.  Kidney segmentation in neck-to-knee body MRI of 40,000 UK Biobank participants.

Authors:  Taro Langner; Andreas Östling; Lukas Maldonis; Albin Karlsson; Daniel Olmo; Dag Lindgren; Andreas Wallin; Lowe Lundin; Robin Strand; Håkan Ahlström; Joel Kullberg
Journal:  Sci Rep       Date:  2020-12-01       Impact factor: 4.379

8.  Feasibility of MR-Based Body Composition Analysis in Large Scale Population Studies.

Authors:  Janne West; Olof Dahlqvist Leinhard; Thobias Romu; Rory Collins; Steve Garratt; Jimmy D Bell; Magnus Borga; Louise Thomas
Journal:  PLoS One       Date:  2016-09-23       Impact factor: 3.240

9.  Large-scale biometry with interpretable neural network regression on UK Biobank body MRI.

Authors:  Taro Langner; Robin Strand; Håkan Ahlström; Joel Kullberg
Journal:  Sci Rep       Date:  2020-10-20       Impact factor: 4.379

10.  Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.

Authors:  E Louise Thomas; Madeleine Cule; Yi Liu; Nicolas Basty; Brandon Whitcher; Jimmy D Bell; Elena P Sorokin; Nick van Bruggen
Journal:  Elife       Date:  2021-06-15       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.