Literature DB >> 35647679

Preliminary XFEL data from spontaneously grown endo-1,4-β-xylanase crystals from Hypocrea virens.

Ki Hyun Nam1, Sehan Park2, Jaehyun Park2.   

Abstract

The enzymatic degradation of semi-cellulosic substrates has recently received immense attention. The enzyme endo-1,4-β-xylanase is essential for the complete digestion of complex and heterogeneous hemicellulose. Here, the purification, crystallization and preliminary X-ray free-electron laser (XFEL) diffraction analysis of endo-1,4-β-xylanase from the fungus Hypocrea virens (HviGH11) are reported. Codon-optimized HviGH11 was overexpressed in Escherichia coli and spontaneously crystallized after His-tag purification and concentration. Preliminary XFEL diffraction data were collected at the Pohang Accelerator Laboratory XFEL (PAL-XFEL). A total of 1021 images containing Bragg peaks were obtained and indexed. The HviGH11 crystals belonged to the orthorhombic space group P212121, with unit-cell parameters a = 43.80, b = 51.90, c = 94.90 Å. Using 956 diffraction patterns, the phasing problem was solved and an initial model structure of HviGH11 was obtained.

Entities:  

Keywords:  GH11; Hypocrea virens; X-ray free-electron lasers; endo-1,4-β-xylanase; xylanases

Mesh:

Substances:

Year:  2022        PMID: 35647679      PMCID: PMC9158662          DOI: 10.1107/S2053230X22005118

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.072


  12 in total

1.  Contaminant occurrence, identification and control in a pilot-scale corn fiber to ethanol conversion process.

Authors:  Daniel J Schell; Nancy Dowe; Kelly N Ibsen; Cynthia J Riley; Mark F Ruth; Robert E Lumpkin
Journal:  Bioresour Technol       Date:  2006-11-15       Impact factor: 9.642

Review 2.  Xylanases, xylanase families and extremophilic xylanases.

Authors:  Tony Collins; Charles Gerday; Georges Feller
Journal:  FEMS Microbiol Rev       Date:  2005-01       Impact factor: 16.408

Review 3.  Bioethanol.

Authors:  Kevin A Gray; Lishan Zhao; Mark Emptage
Journal:  Curr Opin Chem Biol       Date:  2006-03-07       Impact factor: 8.822

Review 4.  Lignocellulosic Biomass: A Sustainable Bioenergy Source for the Future.

Authors:  Shabih Fatma; Amir Hameed; Muhammad Noman; Temoor Ahmed; Muhammad Shahid; Mohsin Tariq; Imran Sohail; Romana Tabassum
Journal:  Protein Pept Lett       Date:  2018       Impact factor: 1.890

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Focusing X-ray free-electron laser pulses using Kirkpatrick-Baez mirrors at the NCI hutch of the PAL-XFEL.

Authors:  Jangwoo Kim; Hyo Yun Kim; Jaehyun Park; Sangsoo Kim; Sunam Kim; Seungyu Rah; Jun Lim; Ki Hyun Nam
Journal:  J Synchrotron Radiat       Date:  2018-01-01       Impact factor: 2.616

7.  Processing serial crystallography data with CrystFEL: a step-by-step guide.

Authors:  Thomas A White
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-01-31       Impact factor: 7.652

8.  XGANDALF - extended gradient descent algorithm for lattice finding.

Authors:  Yaroslav Gevorkov; Oleksandr Yefanov; Anton Barty; Thomas A White; Valerio Mariani; Wolfgang Brehm; Aleksandra Tolstikova; Rolf Rainer Grigat; Henry N Chapman
Journal:  Acta Crystallogr A Found Adv       Date:  2019-08-30       Impact factor: 2.290

9.  Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.

Authors:  Dorothee Liebschner; Pavel V Afonine; Matthew L Baker; Gábor Bunkóczi; Vincent B Chen; Tristan I Croll; Bradley Hintze; Li Wei Hung; Swati Jain; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Billy K Poon; Michael G Prisant; Randy J Read; Jane S Richardson; David C Richardson; Massimo D Sammito; Oleg V Sobolev; Duncan H Stockwell; Thomas C Terwilliger; Alexandre G Urzhumtsev; Lizbeth L Videau; Christopher J Williams; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-02       Impact factor: 7.652

10.  Highly accurate protein structure prediction with AlphaFold.

Authors:  John Jumper; Richard Evans; Alexander Pritzel; Tim Green; Michael Figurnov; Olaf Ronneberger; Kathryn Tunyasuvunakool; Russ Bates; Augustin Žídek; Anna Potapenko; Alex Bridgland; Clemens Meyer; Simon A A Kohl; Andrew J Ballard; Andrew Cowie; Bernardino Romera-Paredes; Stanislav Nikolov; Rishub Jain; Demis Hassabis; Jonas Adler; Trevor Back; Stig Petersen; David Reiman; Ellen Clancy; Michal Zielinski; Martin Steinegger; Michalina Pacholska; Tamas Berghammer; Sebastian Bodenstein; David Silver; Oriol Vinyals; Andrew W Senior; Koray Kavukcuoglu; Pushmeet Kohli
Journal:  Nature       Date:  2021-07-15       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.