Sisem Ektirici1, Önder Kurç1, Mitra Jalilzadeh1, Süleyman Aşır2, Deniz Türkmen1. 1. Department of Chemistry, Faculty of Science, Hacettepe University, Beytepe, Ankara 06800, Turkey. 2. Department of Materials Science and Nanotechnology Engineering, Near East University, Nicosia 99138, Mersin 10 Turkey, North Cyprus.
Abstract
In this study, the molecularly imprinted polymers (MIPs) that will be formed by the sulfamethoxazole (SMX) molecule and methacrylic acid (MAA) molecule were examined theoretically. The most stable interaction region between the two molecules was determined in solvent environments (ethanol, acetonitrile, and dimethylsulfoxide), and monomer ratios (SMX/MAA; 1:1, 1:2, and 1:3) were examined to form the most stable geometry. The number and length of the hydrogen bonds formed between the template molecule and the functional monomer and the interaction between the atoms were determined. Geometry optimizations of the molecules were calculated by the DFT method at the M06-2X/ccpVTZ level, and single-point energy calculations were carried out at the B2PLYP-D3/ccpVDZ level. In addition to the theoretical studies, the experimental Fourier-transform infrared spectroscopy (FTIR) spectrum of the complex formed between SMX and MAA was compared with the theoretical FTIR spectrum. As a result of the studies, the monomer ratio and solvent environment in which the stable complex was formed were determined in the MIP studies carried out with the SMX template molecule and MAA monomer. The most stable template molecule-monomer ratio of the complex between SMX and MAA was determined to be 1:3, and the solvent medium in which the most stable geometry was formed was acetonitrile.
In this study, the molecularly imprinted polymers (MIPs) that will be formed by the sulfamethoxazole (SMX) molecule and methacrylic acid (MAA) molecule were examined theoretically. The most stable interaction region between the two molecules was determined in solvent environments (ethanol, acetonitrile, and dimethylsulfoxide), and monomer ratios (SMX/MAA; 1:1, 1:2, and 1:3) were examined to form the most stable geometry. The number and length of the hydrogen bonds formed between the template molecule and the functional monomer and the interaction between the atoms were determined. Geometry optimizations of the molecules were calculated by the DFT method at the M06-2X/ccpVTZ level, and single-point energy calculations were carried out at the B2PLYP-D3/ccpVDZ level. In addition to the theoretical studies, the experimental Fourier-transform infrared spectroscopy (FTIR) spectrum of the complex formed between SMX and MAA was compared with the theoretical FTIR spectrum. As a result of the studies, the monomer ratio and solvent environment in which the stable complex was formed were determined in the MIP studies carried out with the SMX template molecule and MAA monomer. The most stable template molecule-monomer ratio of the complex between SMX and MAA was determined to be 1:3, and the solvent medium in which the most stable geometry was formed was acetonitrile.
It
has been shown that the industrial production of antibiotics
and their use in animals pollute water and fauna. It also increases
antibiotic resistance and exposure to antibiotic residues, resulting
in hypersensitivity, carcinogenicity, mutagenicity, teratogenicity,
bone marrow depression, and disruption of normal intestinal flora.[1−3] The Organization for Economic Co-operation and Development estimates
that antibiotic resistance has killed approximately 700,000 people
globally. This number could reach 9.5 million if the current resistance
level increases by 40%.[4] Those reports
show an environmental and health risk posed by antimicrobial residues.
To prevent the danger they possess, the regulatory agencies of most
countries have evaluated their toxicological data and determined the
maximum residue limit (MRL).Tetracycline, penicillin, fluoroquinolones,
and sulfonamides are
veterinarians’ most commonly used antibiotics.[5] Sulfonamides are an antibiotic family well known for their
low production price and effectiveness as a therapeutic agent. Sulfonamides
interfere with the folic acid synthesis pathway of bacteria and stop
their growth and proliferation. Sulfamethoxazole (SMX) is one of the
sulfonamide antibiotics. SMX is widely used in treating urinary tract
infections, gastrointestinal infections, respiratory infections, and
trimethoprim in humans and animals. SMX with other antibiotics is
given to patients with HIV and other immunologic-protective measurements
against opportunistic infections.[6] Their
usage in large quantities, being widely used in animal and human treatment,
increases the risk of environmental pollution and, therefore, antibiotic
resistance.[7] Its presence has been reported
in sewage sludge,[8] milk, and other food
samples from various communities, which show a high residual rate,[9] and freshwater[10,11] in various
countries.For SMX, according to the European Medicinal Agency,
the Committee
for the Veterinary Medicinal Product (EMEA/MRL/026/95) evaluated the
sulfonamide group antibiotic’s toxicology. It determined 100
μg/kg MRL for sulfonamide group residues in edible animal tissues.
Most of the time, these agencies work with local governments to enforce
MRL limits on foods and water and detect their presence in those sources
that require good detection techniques.Molecular imprinting
is a candidate for the detection of antibiotic
residues and purification. Depending on the product type, molecularly
imprinted polymers (MIPs) may have a very high mechanical durability
resistance against heat, pressure, acids, bases, and organic solvents.
Due to their stability in extreme conditions, MIPs have been drawing
the attention of many industries, like pharmaceuticals.[12−16] Because of the properties of MIPs, their use in antibiotic detection
in food and environmental samples, which have gained importance from
the study areas of biochemical molecules, is also essential. However,
their properties are directly affected by important parameters[17,18] such as monomer–template type, interaction strength between
them, and solvent type, which requires serious planning before synthesizing
MIPs. Investigating these parameters involves many laborious tests[17,19] and experiments.Theoretical studies, before the wet experiments
of biological molecules,
are essential in terms of time, cost, and efficiency.[20−22] Although the first molecular mechanics (MM) methods were used to
examine the interactions of molecules computationally, researchers
have been using quantum mechanical (QM) methods more and more in the
last decade. Although QM offers more accurate results than MM, QM
methods rely more on computational power due to the number of calculations
needed. To use this method, many techniques are employed to shorten
its calculation, such as the use of machine learning[23−26] by taking advantage of its learning algorithms and shortening process,
or using methods like density functional theory (DFT) and reducing
the amount of calculations, these methods shorten the required computational
cost and could make computational monomer screening more available;
DFT and becke 3-parameter exchange correlation function (B3LYP) hybrid
theory and Minnesota 06 (M06-2X) is a well-known and versatile technique
used in computational chemistry for investigating the interaction
between molecules.[27−29] It is possible to employ this technique to optimize
some aspects of MIP effects[30,31] without laborious experiments.Within the scope of the study, to establish a theoretical basis
for MIP applications, the interactions of the SMX molecule, one of
the antibiotics that cause antibiotic residues and environmental pollution,
with the functional monomer methacrylic acid (MAA) were examined theoretically,
and a pioneering study was conducted for the experimental studies
to be carried out. The monomer ratio and solvent environment of the
most stable complex formed between the two molecules were determined.
The most stable geometry (optimized geometry), intermolecular hydrogen
bonds, interaction energies, Gibbs free energies, highest occupied
molecular orbital–lowest unoccupied molecular orbital (HOMO–LUMO)
energy, and energy gap were calculated. Problems such as the monomer
ratio and solvent environment, which are of great importance for MIP
applications, contributed to time and efficiency with the results
obtained in this theoretical study for SMX and MAA molecules. Molecular
geometries at different binding sites, as a measure of stability,
interaction energies, Gibbs free energies, and hydrogen bonds were
investigated with the M06-2X method ccpVTZ basis set. The HOMO–LUMO
energies, HOMO–LUMO energy gaps, experimental Fourier-transform
infrared spectroscopy (FTIR) spectra, and theoretical FTIR spectra
of the most stable complex were compared. The complexes’ interaction
energies and hydrogen bonds were investigated at 1:1, 1:2, and 1:3
monomer ratios for the most stable complex formation. The interactions
between the template molecule and functional monomer were investigated
in ethanol, acetonitrile, and dimethylsulfoxide (DMSO) solvents.
Materials
and Methods
Materials
Geometry optimizations and single point energies
of all molecules were calculated with the Gaussian 09 program. Molecular
structures and theoretical FTIR spectra (obtained) were visualized
with the Avogadro 1.2 program. The template molecule SMX (analytical
standard) and monomer MAA used for FTIR studies were obtained from
Sigma-Aldrich. Solvent DMSO, acetonitrile, and ethanol were supplied
from Merck. Experimental FTIR characterization was done by an FTIR–attenuated
total reflection spectrophotometer (Thermo Ficher Scientific, Nicolet
is5, Waltham, USA) in the 400–4000 cm–1 range
of wavenumber with a resolution of 2 cm–1.
Methods
Template molecule SMX, functional monomer MAA, and template molecule–monomer
complex geometries were first modeled with the Gaussview 5.0 program.
Geometries obtained after pre-optimization were subjected to geometry
optimization with the DFT method at the M06-2X[32]/ccpVTZ level.[33] B2PLYP-D3/[34]cpVDZ calculations were used for the single point
energies and thermochemical parameters. Dispersion effect was corrected
with the Grimme’s dispersion model.[35] The interaction energies of the molecules at different monomer ratios
(ΔE),[36] Gibbs free
energies (ΔG) in different binding sites, and
solvation energies in different solvents (ΔEsolvation)[37,38] were calculated by eqs –3, respectively, and all theoretical FTIR spectra were obtained with
the Gaussian 09 program.
Interaction Energies and Gibbs Free Energies
in the Gas Phase
The interaction energy measures the stability
of the complex geometries
formed between the SMX template molecule and the MAA monomer. The
lower the interaction energy of the complex, the greater the stability
of the complex geometry and the interaction forces between SMX and
MAA.[39] For this reason, the gas-phase interaction
energies of complexes with molar ratios of 1:1 [SMX–MAA] (ΔE1), 1:2 [SMX–MAA–MAA] (ΔE2), 1:3 [SMX–MAA–MAA–MAA]
(ΔE3), and Gibbs free energies for
different binding sites were calculated. The basis set superposition
error (BSSE) corrected by using a counterpoise method (CP).[40,41] Template molecules (SMX), monomers (MAA), and complexes of SMX with
different MAA ratios were optimized and their single-point energies
calculated.The interaction energy of the complex consisting
of template molecule, SMX, and the functional monomer, MAA, was calculated
by eq .Ecomplex is the energy of the [SMX–MAA]
complex, Etemplate is the energy of the
SMX molecule, and nEmonomer is the energy
of the MAA molecule that changes with the monomer ratio used.Gcomplex is the Gibbs free energy of
the [SMX–MAA] complex, Gtemplate is the Gibbs free energy of the SMX molecule, and nGmonomer is the total Gibbs free energy of the MAA molecules
that changes with the monomer ratio used.
Solvation Energies
In non-covalent imprinting applications,
choosing the appropriate solvent for the non-covalent interactions
between functional monomers and imprinted molecules for complex formation
is very important for complex stability. The appropriate solvent can
increase the efficiency of the prepared structures. In the process
of preparing MIPs, the solvent must not only have the ability to dissolve
all the component reagents in the reaction but also not interfere
with the interactions between the template molecules and monomers.
For the solvent effect, we used the solvation model based on density
(SMD); SMD is a universal continuum solvation model applied for both
charged and non-charged solute systems. To use the solvent model,
we defined the molecular cavity with the Van der Waals surface cavity
model and built a cavity using the universal force field.For
selecting the most suitable solvent that will show the highest efficiency
for the imprinted polymers, the energies of the 1:1 M SMX–MAA
complexes in ethanol, acetonitrile, and DMSO solvents were calculated
by the M06-2X theory and ccpVTZ basis set.Solvation energies
(ΔEsolvation) of the stable complexes
in different solvents are calculated using eq .Egas is the interaction energy of the
SMX–MAA complex in the vacuum environment, and Esolvation is the interaction energy of the [SMX–MAA]
complex in the solvent environment.In addition to the interaction
energies, Gibbs free energies are
calculated according to eq to investigate the most stable pre-complex between SMX and
MAA molecules in the solvent environment.The thermodynamic scheme given for
the solvent medium calculation
is shown below.
FTIR Analysis
As it is known, FTIR
is a characterization
method used for the identification and detailing of the functional
groups in processes such as material identification and verification,
copolymer evaluation, molecular fragmentation evaluation, basic drug
research and structural explanation, formula development and validation,
and quality control processes of materials. Also, FTIR is frequently
used in MIP applications to correlate the computational results of
template molecules, functional monomers, and complexes with the experimental
results.[42−44] This study compared the experimental and theoretical
FTIR spectra of the most stable complex formed by SMX and MAA molecules.
Results and Discussion
Determination of Binding Sites
For
MIPs, hydrogen bond
formation and the strength of the hydrogen bonds are essential in
terms of stability and selectivity.[45] Because
the template molecule, SMX, contains many different interaction sites
that can form hydrogen bonds with the monomer, MAA, it is important
to determine which regions the monomer interactions are most effective.
Therefore, M06-2X/ccpVTZ calculations were carried out for the interaction
energies and formed hydrogen bonds at different potential binding
sites at a molar ratio of 1:1, and after calculations, BSSE was corrected
(Scheme ). The interaction
regions and hydrogen bonds of the optimized geometries are given in Figure . The interaction
energies, Gibbs free energies, and number of hydrogen bonds formed
are given in Table . Table shows from
which atoms the hydrogen bonds are formed and their distances.
Scheme 1
Schematic Representation of the Gibbs Free Energies for the Pre-Complexes
of SMX and MAA Molecules in a Solvent Medium
Figure 1
Hydrogen bonds
and complex geometries formed between SMX and MAA
at different binding sites.
Table 1
Interaction Energies, Gibbs Free Energies,
and Number of Hydrogen Bonds Formed at the Different Binding Sites
of [SMX–MAA] Complexes (kcal mol–1)
complexes
ΔE
ΔG
H bond
[SMX–MAA]1
–9.94
1.66
2
[SMX–MAA]2
–17.53
–5.37
2
[SMX–MAA]3
–10.57
–2.34
1
[SMX–MAA]4
–9.86
–2.41
1
Table 2
Hydrogen Bonds Are
Formed between
SMX and MAA Molecules and Their Lengths (Å)
complex
interacted
atoms
bond length
(Å)
[SMX–MAA]1
N10···H37
1.888
O35···H17
2.183
[SMX–MAA]2
O35···H12
1.808
H37···O19
1.683
[SMX–MAA]3
O28···H37
1.775
[SMX–MAA]4
N21···H37
1.868
Hydrogen bonds
and complex geometries formed between SMX and MAA
at different binding sites.As seen in Figure , many different regions can form hydrogen
bonds between SMX and
MAA molecules. The values of interaction energies of [SMX–MAA]
complexes interacting from different binding sites are shown in Table . According to the
data obtained from Table , the order of interaction energies of SMX–MAA complexes
is [SMX–MAA]4 > [SMX–MAA]1 >
[SMX–MAA]3 > [SMX–MAA]2. Because
the hydrogen bonds
in the [SMX–MAA]4 complexes are formed with the
atoms in the rings of the SMX molecule, secondary interactions between
the template molecule and monomer in the complex to be formed are
not preferred from these regions. As can be seen from the Gibbs free
energies calculated from eq , the complex with the only negative value appears to be attributed
to the [SMX–MAA]2 complexes. In Tables and 2, hydrogen bond interactions
were observed in [SMX–MAA]1 and [SMX–MAA]2 complexes, and one hydrogen bond interaction was observed
in [SMX–MAA]3 and [SMX–MAA]4 complexes.
Based on the strength of the hydrogen bonds formed, it is seen that
the strongest hydrogen bonds are formed in the [SMX–MAA]2 complexes.
Frontier Molecular Orbitals of [SMX–MAA]2 Complex
It is well known that the HOMO and LUMO energies play a significant
role in elucidating reaction mechanisms. HOMO energy measures a molecule’s
ability to donate electrons, while LUMO energy is a measure of its
ability to accept electrons. Because the [SMX–MAA]2 complex from different interaction regions constitutes the most
stable geometry, HOMO–LUMO energies and HOMO–LUMO energy
gap differences of the formed complex, the SMX template molecule and
MAA monomer are given in Table (in eV) for a detailed investigation of this complex. B2PLYLP-D3/ccpVDZ
calculations were performed for the molecular orbital surfaces of
the template molecule SMX, the functional monomer MAA, and the [SMX–MAA]2 complex, and the calculation results are given in Table .
Table 3
HOMO (EHOMO) and LUMO (ELUMO) Energies, and Energy
Gaps (ΔE) of SMX, MAA, and [SMX–MAA]2 Molecules in eV
molecule
EHOMO (eV)
ELUMO (eV)
ΔE (eV)
SMX
–7.65
–4.18
3.47
MAA
–9.67
–4.58
5.09
[SMX–MAA]2
–7.68
–4.58
3.10
As seen in Table , the HOMO energy of the SMX molecule (EHOMO) was found to be greater than the HOMO
energy of the MAA molecule.
The LUMO energy of the MAA ELUMO molecule
was lower than the LUMO energy of the SMX molecule. In line with these
data, the more active SMX template molecule is the electron donor,
while the less active MAA monomer is the electron acceptor in the
[SMX–MAA]2 complex (Figure ).
Figure 2
Molecular orbital surfaces and HOMO–LUMO
energies (in eV)
of the template molecule SMX, functional monomer MAA, and [SMX–MAA]2 complexes.
Molecular orbital surfaces and HOMO–LUMO
energies (in eV)
of the template molecule SMX, functional monomer MAA, and [SMX–MAA]2 complexes.
Determination of Molar
Ratio
Although the region that
gives the most stable complex geometry at a 1:1 M ratio is calculated
as the [SMX–MAA]2 complexes after the calculations
above when the monomer molar ratio changes, the interaction energies
and hydrogen bonds between the molecules are unknown. The interaction
energies of the [SMX–MAA]2 complexes in molar ratios
of 1:1, 1:2, and 1:3 were calculated to answer this question. The
optimized geometries are given in Figure , and interaction energies are given in Table .
Figure 3
Optimized geometries
and hydrogen bond lengths of the [SMX–MAA]2 complexes
in the same binding site at molar ratios of (a)
1:1, (b) 1:2, and (c) 1:3.
Table 4
Interaction Energies of [SMX–MAA]2 Complexes Interacting at Different Monomer Ratios; 1:1, 1:2,
and 1:3
molar ratio
ΔE (kcal mol–1)
1:1
–17.53
1:2
–27.42
1:3
–37.94
Optimized geometries
and hydrogen bond lengths of the [SMX–MAA]2 complexes
in the same binding site at molar ratios of (a)
1:1, (b) 1:2, and (c) 1:3.As the complex’s interaction energy lowered, the complex
geometry’s stability increased. The molar ratio at which the
most stable geometry will be formed was calculated to be the [SMX–MAA]2 complex, which has the most stable binding interaction region.
It was found that the most stable geometry would be formed at a molar
ratio of 1:3 from interaction energies. The interaction energy of
the [SMX–MAA]2 complexes in a 1:3 M ratio was calculated
to be −37.94 kcal mol–1. Hydrogen bonds between
SMX–MAA molecules were formed between O2–H57 and O38–H13
atoms, and the lengths of these bonds were determined to be 1.67 and
2.20 Å, respectively.
Determination of the Solvent
In
non-covalent imprinting,
it is crucial to screen solvents to form stable complexes with non-covalent
interactions between functional monomers and imprinted molecules.
For this reason, within the scope of the study, solvation energy (ΔEsolvation) values of [SMX–MAA]2 complexes calculated in eq are calculated for ethanol, acetonitrile, and DMSO solvents
in a 1:1 M ratio using the DFT method at the B2PLYP-D3/ccpVDZ level. Table shows the solvation
energies ΔEsolvation (kcal mol–1) of SMX, MAA, and [SMX–MAA]2 molecules
in ethanol, acetonitrile, and DMSO solvents. Table shows the hydrogen bonding atoms and the
lengths of these bonds in the [SMX–MAA]2 complexes
in different solvents in a 1:1 M ratio (Figure ).
Table 5
Solvation
Energies (ΔEsolvation) and Gibbs
Free Energies of SMX, MAA
Molecules, and [SMX–MAA]2 Complexes in Ethanol,
Acetonitrile, and DMSO Solvents (kcal mol–1)
ethanol
acetonitrile
DMSO
molecule
ΔEsolvation
ΔGsolvation
ΔEsolvation
ΔGsolvation
ΔEsolvation
ΔGsolvation
SMX
–20.88
–19.67
–21.37
–20.64
–19.90
–19.00
MAA
–6.28
–5.74
–5.41
–5.30
–4.76
–4.68
[SMX–MAA]2
–12.62
1.10
–20.39
0.01
–18.44
0.58
Figure 4
Interactions between the template (SMX) and
the monomer (MAA) in
different solvents (a: DMSO, b: ethanol, and c: acetonitrile) at a
molar ratio of 1:1.
Interactions between the template (SMX) and
the monomer (MAA) in
different solvents (a: DMSO, b: ethanol, and c: acetonitrile) at a
molar ratio of 1:1.Considering the ΔEsolvation energy
values, the order of solvation energies for the [SMX–MAA]2 complexes, which has the most stable binding site, was calculated
as ethanol > DMSO > acetonitrile. The order of Gibbs free energy
values
was calculated as ethanol > DMSO > acetonitrile. The hydrogen
bond
between the O25–H36 atoms given in Table is calculated as 1.723 Å in the acetonitrile
solvent, stronger than the hydrogen bonds formed between the same
atoms in other solvents. The solvent with the best interaction between
SMX and MAA was determined as acetonitrile based on the obtained results.
Table 6
Atoms Forming Hydrogen Bonds and Hydrogen
Bond Lengths (Å) in [SMX–MAA]2 Complexes in
Different Solvents
solvent
interacted
atoms
bond length
(Å)
ethanol
O35···H2
1.852
O25···H36
1.760
acetonitrile
O35···H2
1.816
O25···H36
1.723
DMSO
O35···H2
1.808
O25···H2
1.721
[SMX–MAA]5 Complex
Because the 1:3
M ratio is calculated on the same site in the complex with the most
stable geometrical binding site, it is also possible for the monomers
to bind from different sites in this determined molar ratio. In this
possibility, interaction energy values were calculated at different
binding sites of the [SMX–MAA] complex at a molar ratio of
1:3. Because [SMX–MAA]1 and [SMX–MAA]2 complexes give the lowest interaction energies, and the hydrogen
bond strength in these complexes is the highest, the complex energies
were calculated by including the binding sites of the two complexes
at a molar ratio of 1:3; the complex geometry is given in Figure .
Figure 5
Optimized geometry of
the [SMX–MAA]5 complexes.
Optimized geometry of
the [SMX–MAA]5 complexes.The hydrogen bonds in the molecule [SMX–MAA]5,
which is the most stable of the geometries found between 3 MAA
molecules and 1 SMX molecules, are formed between O30–H13 and
O2–H50 H34–O17 atoms, and their lengths are calculated
to be 2.27, 1.73, and 2.07 Å, respectively.It was found that the HOMO energy
(−7.65 eV) of the SMX
molecule (EHOMO) in the vacuum was significantly
more than the HOMO energy of the MAA molecule (−9.66) (Table ). It was found that
the LUMO energy of the MAA molecule (−4.58 eV) was lower than
the LUMO energy of the SMX molecule (−4.18). EHomo energy of [SMX–MAA]5 complexes
was found to be −7.74 and ELumo energy to be −4.64. The HOMO–LUMO energy gap is 3.10
eV. The orbital surfaces of the molecules are given in Figure .
Table 7
HOMO–LUMO Energies (eV) and
Energy Gaps of SMX, MAA, and [SMX–MAA]5 Molecules
in the Gas Phase
molecule
EHOMO
ELUMO
ΔE
SMX
–7.65
–4.18
3.47
MAA
–9.67
–4.58
5.09
[SMX–MAA]5
–7.74
–4.64
3.10
Figure 6
Molecular orbital surfaces
and HOMO–LUMO energies (in eV)
of the template molecule SMX, functional monomer MAA, and [SMX–MAA]5 complexes. Comparison of theoretical FTIR spectrum of MAA
and SMX molecules.
Molecular orbital surfaces
and HOMO–LUMO energies (in eV)
of the template molecule SMX, functional monomer MAA, and [SMX–MAA]5 complexes. Comparison of theoretical FTIR spectrum of MAA
and SMX molecules.In the theoretical spectrum
of the MAA molecule, the peaks at 1749,
1363, and 988 cm–1 can be attributed to C=O
stretching, O–H in-plane bending, and O–H out-of-plane
bending vibrations, respectively. The characteristic vibrations of
NH stretching in sulfonamide (3182 cm–1), C=N
imine stretching (1669 cm–1), and S=O stretching
(1326 and 1129 cm–1) were observed in the theoretical
spectrum of SMX. Additionally, based on the theoretical spectrum of
the SMX–MAA complex, the N–H stretching and S=O
stretching in sulfonamide together with C=O stretching in MAA
were shifted to shorter wavenumbers (N–Hstr; 3182–3157
cm–1, S=Ostr; 1326–1322
and 1292–1281 cm–1, and C=Ostr; 1749–1720 cm–1). While O–H in-plane
and out-of-plane bending vibrations of MAA were shifted to higher
wavenumbers (O–H in-plane bending; 1363–1408 cm–1 and O–H out-of-plane bending; 988–1060
cm–1). This redshift of stretching vibrations for
the related functional groups and the blueshift of bending vibrations
strongly support the formation of hydrogen bonds between the corresponding
groups. At the same time, the experimental data showed a similar trend
with a redshift of C=O (1700–1677 cm–1) and S=O (1318–1301 cm–1) stretching
together with a blueshift of the O–H out-of-plane bending (1002–1019
cm–1) and O–H in-plane bending (1270–1301
cm–1) (Figure ).
Figure 7
Theoretical and experimental FTIR spectra of the (A) MAA,
(B) SMX,
and (C) [SMX–MAA]2 complexes.
Theoretical and experimental FTIR spectra of the (A) MAA,
(B) SMX,
and (C) [SMX–MAA]2 complexes.
Conclusions
Within the scope of this study, the solvent
environment and monomer
ratio, in which the interactions between SMX and MAA molecules are
the most stable, were investigated. The stability of the interactions
between the template molecule and the functional monomer is determined
by concepts such as hydrogen bonds, interaction energies, Gibbs free
energies, and solvation energies. For this purpose, primarily, it
was investigated in which region the hydrogen bond interactions between
the two molecules were more stable. The complex geometry with the
lowest calculated interaction energy and Gibbs energy was the [SMX–MAA]2 complex.After determining the binding site, the interaction
energies and
intermolecular hydrogen bonds were investigated by increasing the
number of monomers in the region where the most stable complex geometry
was formed. As a result of the calculations, the ratio of the monomer
with the lowest interaction energy and the shortest hydrogen bond
length was determined to be one SMX molecule and three MAA molecules.
The interaction energy of the complex calculated from the same region
in the gas phase at a 1:3 M ratio was calculated to be −37.94
kcal mol–1.This study aimed to establish
a theoretical basis for MIP applications,
and the choice of the solvent in MIP applications is of great importance.
In the synthesis of MIPs, a solvent with a high solvation value weakens
the interactions at the interaction sites of the template molecule
with the functional monomer. Therefore, the molecular recognition
ability is weakened. Molecular geometries and solvation energies were
calculated at a 1:1 mole ratio in ethanol, acetonitrile, and DMSO
solvents to find the solvent environment where the most stable complex
will form between SMX and MAA. Within the scope of the study, the
low solvation energy and Gibbs free energy values of the [SMX–MAA]2 complex in the acetonitrile environment indicates that the
intermolecular interaction is at a maximum level in the acetonitrile
environment. The solvation energy of the complex was calculated to
be −20.39 kcal mol–1 in this solvent at a
molar ratio of 1:1.After determining the correct molar ratio
and solvent environment,
the [SMX–MAA]5 complex, in which the monomer binds
to the template molecule at sites with different hydrogen bond potentials,
was investigated in a vacuum environment.The interaction energy
of the complex was calculated to be −39.73
kcal mol–1. The HOMO–LUMO energy difference
was determined to be 3.10 eV. In addition to the theoretical studies,
the theoretical FTIR spectra of the SMX, MAA, and SMX–MAA complex
in a DMSO environment were compared with the experimental FTIR spectra.As a result of the study, it was found that the complex geometry
that will form between SMX and MAA will be the most stable at a 1:3
M ratio in an acetonitrile solvent. The results of the computational
studies of these molecules, which can be used to remove environmental
pollution or in drug designs, are a pioneer for the experimental MIP
studies.
Authors: Luis Enrique Gómez-Pineda; Georgina Esther Pina-Luis; Carlos Martín Cortés-Romero; Manuel Eduardo Palomar-Pardavé; Giselle Alicia Rosquete-Pina; Marta Elena Díaz-García; María de Los Angeles Cuán Hernández Journal: Molecules Date: 2010-06-02 Impact factor: 4.411