Literature DB >> 35637779

Identification of Some Promising Heterocycles Useful in Treatment of Allergic Rhinitis: Virtual Screening, Pharmacophore Mapping, Molecular Docking, and Molecular Dynamics.

Amany Belal1, Mohamed A Elanany2, Reem I Alsantali1, Munira M Alrooqi3, Abdalla R Mohamed4, Sherifa Hasabelnaby5.   

Abstract

Rhinitis is an allergic disease that causes troubles and restlessness for patients. In this research work we will focus on finding promising organic molecules with potential ability to target histamine receptor with no sedative side effect. Phalazines and their isosteres, pyrimidines and pyridines have been reported to target H1 receptors, for this reason we have searched for library of these basic scaffolds, this library which has 184 organic molecules will be subjected for further explorations through computer aided drug design techniques. Swiss ADMET will be used to gather these compounds in clusters. Cluster with low potential to penetrate BBB is selected for virtual screening through pharmacophore model. Then molecular docking that revealed the stability of the complex formed between the investigated molecules and H1 receptor. ADMET profile showed three compounds (XVIII), (XX), and (XXI) with no toxicity on liver and no effect on CYP2D6, these three compounds were subjected to molecular dynamic simulations and compound (XVIII) showed the most stable complex with the target protein (H1). Finally, we can say this work helped us to find new compounds with promising potential to target H1 without ability to penetrate BBB, so they can be used as useful candidates in treatment of rhinitis and deserve to be subjected for preclinical and clinical investigations. Supplementary Information: The online version contains supplementary material available at 10.1134/S1068162022330019. © Pleiades Publishing, Ltd. 2022, ISSN 1068-1620, Russian Journal of Bioorganic Chemistry, 2022, Vol. 48, No. 2, pp. 438–456. © Pleiades Publishing, Ltd., 2022.

Entities:  

Keywords:  histamine H1; molecular docking; molecular dynamics; pharmacophores; phthalazine; pyridines; pyrimidines; rhinitis; virtual screening

Year:  2022        PMID: 35637779      PMCID: PMC9134989          DOI: 10.1134/S1068162022330019

Source DB:  PubMed          Journal:  Russ J Bioorg Chem        ISSN: 1068-1620            Impact factor:   1.254


INTRODUCTION

Rhinitis is defined as an inflammation of the nasal mucosal membrane that manifests itself in many forms like sneezing, pruritus, difficulty in breathing and increased nasal discharge. It is classified into many subtypes according to the causative agent such as viral or bacterial infections and allergies [1]. However, many cases illustrate the interchanging properties of these subtypes as displayed by conversion of a type into another in addition to the presence of multiple subtypes in a single case [2, 3]. The key factor in tackling rhinitis is identifying the type(s) and severity which in turn will vary the treatment. Infectious rhinitis originates from many organisms, predominantly viruses such as adenovirus, coronavirus, and influenza virus. In most cases, the symptoms are self-limited, and there is no need for medical intervention unless there is bacterial superinfection [4]. Allergic rhinitis is one of the most prevalent types that affects millions worldwide reaching 30% of adults and 40% in children [5]. Allergens are proteins found in airborne particles such as pollens, dust mites, insect excrement, animal dander, and molds that upon exposure causes a two phase allergic reaction [6]. The first phase has a rapid onset within minutes the reaction of IgE and antigen causes the release of inflammatory mediators from mast cells such as interleukins, prostaglandins, cytokines, and histamine. These mediators are the ones responsible for the clinical manifestations of rhinitis especially the interaction of histamine and H1 receptor. In the late phase, basophils, eosinophils, neutrophils, mast cells and mononuclear cells infiltrate the nasal mucosa causing nasal congestion mainly [7]. These symptoms can be intermittent or persistent and vary in severity [8]. The treatment of allergic rhinitis is mainly three folds; first and foremost is the avoidance of the causative allergen while the second line is using medications while the third is immunotherapy. Medications used revolves around antihistaminic drugs and corticosteroids [5, 8]. Since their first appearance in the 20th century, antihistaminic medications proved their useful effects in alleviating rhinitis. The first generation of these drugs includes diphenhydramine, chlorpheniramine and meclizine, but they have some unwanted side effects like sedation due to their high BBB (Blood Brain Barrier) permeability as well as anticholinergic properties [9]. The second-generation drugs had low cholinergic actions and were more lipophobic, thus had a limited central effects, such as cetirizine, azelastine and loratadine [10, 11] (Fig. 1). Unfortunately second generation drugs especially loratadine had high metabolism rate in liver and require careful dose adjustment in haptic impaired patients [12, 13]. First and second-generation antihistaminic drugs. Through literature review, the promising effects of phthalazinone, pyrimidine and pyran derivatives (Fig. 2) on histamine receptors, they are considered as interesting moieties to build upon for achieving antihistaminic therapies [14, 15]. In our work, we searched for new promising heterocyclic molecules to target H1 with minimal side effects on the brain.
Fig. 2.

Various heterocyclic derivatives with antihistaminic potential.

Various heterocyclic derivatives with antihistaminic potential. Boiled egg chart of the library and the three clusters

RESULTS AND DISCUSSION

Library generation and SwissADME profiling. The one hundred eighty-four compounds [16-18] were classified into three main clusters using the online SwissADME tool [19-21], as shown in Fig. 3. The first cluster contained 74 compounds characterized by high GIT absorption and no BBB permeability. The second cluster contained 99 compounds capable of penetration BBB. The final cluster had 11 compounds with no GIT absorption. We focused on the first cluster to minimize any potential CNS side effects of the compounds. The 2D structure study of the compounds revealed prevalence of compounds with phthalazine moiety with prevalence of over half of the cluster as shown in Figs. 4–7.
Fig. 4.

Cluster 1 (part 1) 2D chemical structures.

Cluster 1 (part 1) 2D chemical structures. Cluster 1 (part 2) 2D chemical structures. Cluster 1 (part 3) 2D chemical structures. Cluster 1 (part 4) 2D chemical structures. e-Pharmacophore generations and screening. The energy minimized pharmacophore (e-pharmacophore) was generated using six known active inhibitors of H1 receptors (azelastine, cetirizine, chlorpheniramine, diphenhydramine, fexofenadine and loratadine). The generated hypothesis had three main features: two ring R features and one positive ionic P feature in a planner triangular shape with the rings close together as its base as shown in Fig. 8, using DUD-E online website [22] and Schrodinger Maestro suite for e-pharmacophore generation and validation [23-25]. The hypothesis demonstrated a good degree of sensitivity with area under accumulated curve (AUAC) and receiver operating characteristic (ROC) of 0.90 and 0.83. Although a three featured pharmacophore may seem lacking in terms of applicability, it proved to be very useful in filtering our cluster and maintaining probable active inhibitors. The screening filtered 62 compounds fitting minimum of two pharmacophoric features. The compounds were then processed for the next phase of our analysis, screening of the cluster.
Fig. 8.

H1 generated e-pharmacophore.

H1 generated e-pharmacophore. Molecular docking on H1 receptor. The validation of docking protocol through re-docking of histamine and comparing between the resulting co-crystallized poses yielded RMSD value of 1.77 as a value of RMSD (Fig. 9). After validation and removal of histamine, the compounds were docked in histamine receptor (PDBID: 7DFL) [26] along with azelastine to use as a reference inhibitor with docking results in.
Fig. 9.

Validation results of 7DFL. Green: co-crystallized pose, pink: re-docked pose.

Validation results of 7DFL. Green: co-crystallized pose, pink: re-docked pose. All compounds achieved scores in negative range indicating favorable binding (Figs. 10–16, Table 1) with most members achieving higher binding than azelastine which scored –6.56 kcal/mole. The pyrido-pyrimidine derivatives (I, II and III) and isoquinolone derivatives (XI, XVI, XVII and XVIII) showed strong binding affinities especially compounds (II, III and XVIII), which were the top-ranking hits. While the phthalazine analogues which consisted most of cluster 1 compounds varied in binding strength with most of them exceeding azelastine’s binding of –7.33 kcal/mole. Upon examining azelastine interactions (Fig. 10), it forms nine hydrophobic interactions with six amino acids (TYR87, TYR108, LYS179, TYR431, MET451, and ILE454) and three hydrogen bonds with three amino acids (ASP107, TYR108, and TYR431). Analysis of the frequent amino acids involved in interactions across all cluster 1 (Fig. 11), revealed the main common amino acids with the inhibitor azelastine (ASP107, TYR108, LYS179, and TYR431).
Fig. 10.

2D Binding interactions of azelastine.

Table 1.

Cluster 1 binding scores and interactions against histamine H1 receptor (PDBID: 7DFL)

CompoundScoreInteractions
H-bondHydrophobic interactions
(I)–7.51PRO161, HIS167, THR194, ASN198LEU154, LEU157, TRP158, PHE168, PHE190, MET193, ILE197
(II)–9.81ASP107, ASP178, LYS179, HIS450TRP103, LEU104, ASP107, TYR108, LYS179, CYS180, TYR431, HIS450, MET451, ILE454
(III)–8.81ASN84, TYR108, THR182TYR87, ASP107, TYR108, SER111, ILE115, LYS179, CYS180, TYR431, PHE432, MET451, ILE454
(IV)–7.66ASP107, TYR108, TYR431, GLU447LEU104, ASP107, TYR108, LYS179, TYR431, HIS450, ILE454
(V)–8.38ASP107, TYR108TRP103, LEU104, TYR108, LYS179, TYR431, HIS450, MET451, ILE454
(VI)–8.30—————————-TYR87, TRP103, ASP107, TYR108, LYS179, TYR431, HIS450, MET451
(VII)–5.79TRP158PRO161, HIS167, TRP189, PHE190, MET193
(VIII)–8.62ASP107, THR112, LYS191, ASN198LEU104, TYR108, LYS179, PHE435, HIS450, MET451, ILE454
(IX)–8.22ASP107, THR112, LYS179, TYR431LEU104, TYR108, LYS179, TYR431, MET451, ILE454, TYR458
(X)–7.99ASP107, THR112, LYS191, ASN198, TYR431LEU104, TYR108, SER111, LYS179, TYR431, MET451, ILE454
(XI)–7.97ASP107, TYR108, ASN198ASP107, TYR108, LYS179, PHE184, TYR185, TRP428, TYR431, PHE432, ILE438, HIS450, ILE454
(XII)–5.84SER155, TRP158LEU157, ILE160, PRO161, ILE197
(XIII)–5.82SER155, TRP158PHE116, LEU157, TRP158, ILE160, PRO161, PHE190, ILE197
(XIV)–5.29LEU157, THR194ILE160, PRO161
(XV)–5.99SER155, TRP158LEU154, LEU157, TRP158, ILE160, PRO161, PHE190, ILE197
(XVI)–7.75LEU154, TRP158, PRO161LEU157, TRP158, ILE160, HIS167, PHE168, ILE197
(XVII)–7.48—————————-LEU154, LEU157, ILE160, PRO161, HIS167, PHE168, TRP189, PHE190, ILE197
(XVIII)–9.62ASN84, ASP107, GLU447, TYR458ASP107, TYR108, LYS179, ILE434, HIS450, MET451
(XIX)–7.11LEU157, PRO161LEU157, HIS167, PHE190, MET193
(XX)–6.26LEU154, TRP158, THR194PHE116, LEU154, LEU157, TRP158, PRO161, MET193, ILE197
(XXI)–6.35LEU154TRP158, ILE160, PRO161, PHE190, MET193, ILE197
(XXII)–6.39ASN198LEU154, ILE197
(XXIII)–5.81SER155, TRP158, THR194PHE116, LEU157, TRP158, PRO161, ILE197,
(XXIV)–6.19TRP158, THR194PHE116, LEU154, LEU157, TRP158, PRO161, PHE190, ILE197
(XXV)–6.12PRO161PRO161
(XXVI)–8.52TYR87, CYS180, TYR431ASP107, LYS179, HIS450, MET451, ILE454
(XXVII)–5.94TRP158, THR194LEU157, ILE160, PRO161, PHE190, ILE197
(XXVIII)–8.04TYR87, CYS180, HIS450LEU104, TYR108, LYS179, TYR431, ILE438, HIS450, MET451, ILE454, TYR458
(XXIX)–7.40ASN84, ASP107, HIS450, TYR458ASP107, TYR108, LYS179, TYR431, PHE435, ILE438, HIS450, MET451, ILE454
(XXX)–8.17TYR87, SER111, TYR431ASP107, TYR108, LYS179, PHE184, TYR431, ILE438, HIS450, MET451, ILE454
(XXXI)–6.31TRP158LEU154, TRP158, PRO161, PHE190, MET193, ILE197
(XXXII)–6.93SER111, TYR431, TYR458LEU104, TRP158, LYS179, TYR185, TYR431, PHE432, PHE435, ILE438, HIS450, ILE454
(XXXIII)–6.57TYR87, LYS179, CYS180, LYS191, TYR431ASP107, TYR108, LYS191, TYR431, HIS450, MET451, ILE454
(XXXIV)–6.64TRP158, THR194, ASN198LEU154, SER155, LEU157, ILE160, PRO161, HIS167, PHE168, PHE190, ILE197
(XXXV)–6.64TRP158, THR194, ASN198LEU157, TRP158, ILE160, PRO161, HIS167, PHE168, PHE190, ILE197
(XXXVI)–8.29TYR87, ASP107, CYS180, TYR458ASP107, LYS179, TYR431, ILE438, HIS450, MET451, ILE454
(XXXVII)–8.48TYR87, ASP107, CYS180, HIS450TRP103, TYR108, LYS179, TYR431, ILE438, HIS450, MET451, ILE454
(XXXVIII)–8.54TYR87, CYS180, TYR431ASP107, LYS179, ILE438, HIS450, MET451, ILE454
(XXXIX)–6.35LEU154, THR194, ASN198TRP158, ILE160, PRO161, HIS167, PHE168, PHE190
(XL)–5.86LEU154LEU154, LEU157, ILE160, PRO161, HIS167, PHE190, ILE197
(XLI)–8.42ASN84, SER111, TYR431ASP107, LYS179, PHE435, HIS450, MET451, ILE454
(XLII)–8.35ASN84, SER111, TYR431, HIS450TYR87, TRP103, LEU104, ASP107, TYR108, ILE115, LYS179, TRP428, PHE432, HIS450, MET451, ILE454
(L)–7.17ASN84, ASN198, HIS450, ILE454TYR87, TRP103, LEU104, ASP107, TYR108, TYR431, PHE432, HIS450, MET451, ILE454, TYR458
(LI)–7.61ASN84, TYR108, SER111, THR112, TYR431, HIS450ASN84, TRP103, LEU104, ASP107, TYR108, TRP428, TYR431, HIS450, MET451, ILE454
(LII)–8.43TYR108, SER111, ASN198, PHE435TRP103, ASP107, TYR108, ILE115, LYS179, TRP428, TYR431, PHE432, ILE438, HIS450, ILE454
(LIII)–8.03ASN84, TYR108, ASN198, HIS450, ILE454TYR87, TRP103, ASP107, TYR108, LYS179, TYR431, PHE432, HIS450, MET451, TYR458
(LIV)–8.30ASN84, TYR108, ASN198, HIS450TYR87, TRP103, LEU104, ASP107, TYR108, TRP158, LYS179, TYR431, PHE432, PHE435, HIS450, MET451, ILE454,
(LV)–8.07SER111TRP103, ASP107, TYR108, LYS179, TYR431, PHE432, HIS430, ILE454, TYR458
(LVI)–8.52TYR108, SER111TRP103, ASP107, TYR108, TRP158, LYS179, TRP428, TYR431, PHE432, ILE438, HIS450, ILE454, TYR458
(LVII)–7.05ASN198, HIS450, ILE454TYR87, TRP103, LEU104, ASP107, TYR108, TYR431, PHE432, HIS450, MET451, ILE454, TYR458
(LVIII)–6.86ASP107, THR112, ASN198TRP103, LEU104, ASP107, TYR108, LYS179, CYS180, TYR431, PHE432, HIS450, ILE454, TYR458
(LIX)–9.40ASP107, ASP178. ASN198TYR87, ASP107, TYR108, LYS179, TYR431, PHE432, HIS450, MET451, ILE454
(LX)–8.97ASN84, SER111, ASN198, TYR431TYR87, TRP103, LEU104, TYR108, TRP158, LYS179, TYR431, PHE432, HIS450, MET451, ILE454
(LXI)–8.57TYR108, LYS179, TYR431, ASN446, HIS450TRP103, ASP107, TYR108, LYS179, PHE432, ILE438, ASN446, HIS450, ILE454, TYR458
(LXII)–9.07ASP107, TYR431LEU104, ASP107, TYR108, TRP158, LYS179, TYR431, PHE432, HIS450, ILE454
(LXIII)–9.12ASP107, TYR108. LYS179, GLU447LEU104, ASP107, TYR108, TRP158, LYS179, TYR431, PHE432, HIS450, ILE454, TYR458
(LXIV)–9.27ASP107, TYR108, ASN198, TYR431TRP103, ASP107, TYR108, LYS179, TYR431, HIS450, MET451, ILE454
(LXV)–9.52ASP107, TYR108, GLU447TYR87, TRP103, LEU104, ASP107, TYR108, TRP158, LYS179, TYR431, PHE432, HIS450, ILE454
(LXVI)———————————–—————————–
(LXVII)–7.82ASP107, LYS179, GLU447, HIS450TYR87, LEU104, TYR108, ASP178, LYS179, TYR431, HIS450, MET451, ILE454
(LXVIII)–8.88SER111, THR112, ASN198, TYR458LEU104, ASP107, TYR108, TRP158, LYS179, TYR431, PHE432, HIS450, MET451, ILE454
(LXIX)———————————–—————————–
(LXX)–7.81ASP107, TYR108, LYS191, TYR431TYR108, LYS179, TYR431, HIS450, MET451, ILE454
(LXXI)–4.50ASP107, TYR108, TYR431TRP103, LEU104, ASP107, TYR108, TRP158, HIS450, MET451, ILE454, TYR458
(LXXII)–6.73HIS450TRP103, LEU104, ASP107, TYR108, TYR431, HIS450, ILE454
(LXXIII)–7.48—————————–LEU104, ASP107, TYR108, ILE115, LYS179, CYS180, TYR431, PHE432, ILE454, TYR458
(LXXIV)–8.23TYR108, TYR458TRP103, ASP107, TYR108, LYS179, TYR431, PHE432, ILE438, HIS450, ILE454
Azelastine–7.33ASP107, TYR108, TYR431TYR87, TYR108, LYS179, TYR431, MET451, ILE454
Fig. 11.

Cluster 1 interactions frequency diagram.

2D Binding interactions of azelastine. Cluster 1 interactions frequency diagram. 2D And 3D interactions of compound (II) (top) and (XVIII) (bottom). Plot of logP vs PSA for cluster 1. RMSD (in Angstrom) values of molecular dynamics of protein alone, and in addition of compounds (XVIII, XX and XXI), respectively. RMSF analysis (in Angstrom) values of molecular dynamics of protein alone, and in addition of compounds (XVIII, XX and XXI), respectively. Ligand contacts are highlighted in green. 2D ligand-protein interactions diagram. Cluster 1 binding scores and interactions against histamine H1 receptor (PDBID: 7DFL) ADMET results for cluster 1 Solubility: 0 (extremely low), 1 (very low), 2 (low), 3 (good), 4 (optimal). Absorption: 0 (good), 1 (moderate), 2 (poor), 3 (very poor). BBB permeability: 0 (very high), 1 (high), 2 (medium), 3 (low), 4 (undefined). Compounds (II) showed the strongest binding of -9.81 kcal/mole via a total of twenty interactions: five hydrogen bonds with residues (ASP107, ASP178, LYS179 and HIS450) and fifteen hydrophobic interactions with residues (TRP103, LEU104, ASP107, TYR108, LYS179, CYS180, TYR431, HIS450, MET451, and ILE454). On the other hand, compound (XVIII) scored –9.62 kcal/mole because of the lower number interactions; ten hydrophobic interactions (ASP107, TYR108, LYS179, ILE434, HIS450, and MET451) and four hydrogen bonds (ASN84, ASP107, GLU447, and TYR458) (Fig. 12).
Fig. 12.

2D And 3D interactions of compound (II) (top) and (XVIII) (bottom).

ADMET study. ADMET (Absorption, Distribution, Metabolism, Excretion and Toxicity) study was performed via DS studio 2016 for an in-depth insight on our compounds. All compounds showed high to moderate intestinal absorption. The BBB (Blood Brain Barrier) permeability was low in (23) compounds, medium in (16) of them, while some compounds showing high penetration potential. Only 6 compounds (VII, VIII, XXX, LXVII, LXX, and LXXI) were predicted to inhibit cytochrome P, whereas 4 compounds (XVIII, XX and XXI and XXIV) showed no hepatotoxic predictions. Molecular dynamics. Molecular dynamics is a tool for visualization and analysis of how proteins act normally in presence and absence of interacting ligands using The Schrödinger Desmond package [25, 27, 28]. Since we set out to acquire compounds of lowest possible side effects, three compounds (XVIII, XX and XXI) were selected as they don’t affect liver or the cytochrome enzymes as well as they achieved a comparable or higher docking scores. The dynamic simulations were performed using the docked complexes on H1 receptor (PDBID: 7DFL), using the chain containing the whole binding site (Table 1). The free protein as well as the protein with the selected compounds were processed and simulated for 50 ns. The RMSD produced from the free protein reached 2.40 nm while all three other simulations of the protein with compounds (XVIII, XX, and XXI) produced higher values. The complex with compound (XVIII) produced RMSD values close to the free protein itself around 2.80 nm as is shown in Fig. 14.
Fig. 14.

RMSD (in Angstrom) values of molecular dynamics of protein alone, and in addition of compounds (XVIII, XX and XXI), respectively.

The root mean square fluctuations (RMSF) was also calculated across the whole simulation time for additional analysis. As shown in Fig. 15, the fluctuation is more prominent in the free protein residues, while the complex with compound (XVIII) shows the lowest degree in fluctuations with its strong binding as previously discussed. shows lower degree of fluctuations as expected due to effects of ligands.
Fig. 15.

RMSF analysis (in Angstrom) values of molecular dynamics of protein alone, and in addition of compounds (XVIII, XX and XXI), respectively. Ligand contacts are highlighted in green.

The 2D analysis of the ligand–protein contacts elucidates the binding of various protein residues to the ligand across the whole simulation time. Thus, providing further proof of the docking results aforementioned. As Fig. 16 shows, compound (XVIII) shows the highest contacts across the simulation time especially with TYR87, ASP107, TYR108 and TYR431 with which azelastine was shown to bind to as well in the sections before.
Fig. 16.

2D ligand-protein interactions diagram.

Molecular mechanics-generalized born surface area (MM-GBSA) calculations. One of the most prominent approaches for estimating binding free energy is Molecular Mechanics Generalized-Born Surface Area (MM-GBSA) [24, 29]. This strategy has been shown to strike a balance between accuracy and computing efficiency, particularly when dealing with complex systems taking into account solvation influence on stability. The lower a ligand protein complex’s calculated binding free energy is, the more stable that complex is projected to be, as well as the higher the ligand’s activity and potency. As expected, the binding free energy (dG binding) of (XVIII) (Table 3) was the lowest in in both cases of considering receptor and ligand strains and under no strain conditions (NS) as well.
Table 3.

Molecular mechanics-generalized born surface area (MM-GBSA) calculations

CompounddG bindingdG binding CoulombdG binding (NS)dG binding (NS) Coulomb
(XVIII)–64.28–6.65–83.66 –4.79
(XX)–36.76–15.87–47.17–15.26
(XXI)–37.76–8.64–44.01–18.59
Molecular mechanics-generalized born surface area (MM-GBSA) calculations

CONCLUSION

A library of 184 compounds with phthalazine backbone and its isoseters, pyrimidines and pyridines were subjected to investigation through CADD as swissADMET, pharmacophore mapping, molecular docking, toxicity profile and molecular dynamics in a journey to find organic molecules with potential activity to target H1 receptors so they can be useful in rhinitis treatment. Further, to find compounds with low toxicity profile, has no effect on the liver and cannot penetrate BBB to obtain a new anti-histamines with no sedative side effects. These extensive studies revealed that three compounds (XVIII, XX and XXI) are the best in their toxicity profile. Compounds (XX and XXI) are phalazine analogs, and compound (XVIII) structure is isoquinoline based. All findings point at the interesting effects of compound (XVIII), especially with its advantages over the well-established azelastine. Thus, we recommend it for further biological evaluations to attain safer and more potent H1 inhibitor to be used in treatment of allergic rhinitis. 11171_2022_8456_MOESM1_ESM.pdf
Table 2.

ADMET results for cluster 1

CompoundSolubilityHIABBBCYP2D6HepatotoxicityLog p_98PSA_98
(I)114FalseTrue5.21185.634
(II)114FalseTrue5.21185.634
(III)114FalseTrue5.21185.634
(IV)114FalseTrue5.09383.311
(V)201FalseTrue4.82878.604
(VI)202FalseTrue4.18984.238
(VII)114TrueTrue6.0263.423
(VIII)114TrueTrue6.0263.423
(IX)114FalseTrue4.95686.358
(X)114FalseTrue4.95686.358
(XI)202FalseTrue3.59488.515
(XII)303FalseTrue2.22680.253
(XIII)302FalseTrue2.55767.699
(XIV)303FalseTrue0.83567.665
(XV)202FalseTrue3.12479.023
(XVI)204FalseTrue3.192102.359
(XVII)202FalseTrue3.52289.805
(XVIII)203FalseFalse3.37489.805
(XIX)204FalseTrue4.089101.128
(XX)303FalseFalse1.799106.578
(XXI)204FalseFalse2.496106.578
(XXII)303FalseTrue0.461109.931
(XXIII)403FalseTrue0.188103.226
(XXIV)303FalseFalse0.886103.226
(XXV)303FalseTrue2.051103.226
(XXVI)303FalseTrue1.771101.213
(XXVII)303FalseTrue1.21371.102
(XXVIII)303FalseTrue1.63682.363
(XXIX)203FalseTrue2.46988.403
(XXX)202TrueTrue3.41188.403
(XXXI)203FalseTrue2.45297.333
(XXXII)203FalseTrue2.45297.333
(XXXIII)204FalseTrue2.691113.926
(XXXIV)202FalseTrue3.20771.102
(XXXV)202FalseTrue3.20771.102
(XXXVI)203FalseTrue2.7880.032
(XXXVII)203FalseTrue2.7880.032
(XXXVIII)303FalseTrue1.771101.213
(XXXIX)303FalseTrue1.64682.363
(XL)303FalseTrue1.64682.363
(XLI)203FalseTrue2.322105.704
(XLII)014FalseTrue6.04959.147
(L)102FalseTrue3.33785.159
(LI)203FalseTrue3.20488.73
(LII)102FalseTrue3.91283.153
(LIII)101FalseTrue4.56171.43
(LIV)101FalseTrue4.79771.43
(LV)101FalseTrue4.271.957
(LVI)101FalseTrue4.72471.957
(LVII)102FalseTrue3.32787.66
(LVIII)102FalseTrue3.8572.605
(LIX)202FalseTrue2.99777.725
(LX)101FalseTrue4.7361.563
(LXI)101FalseTrue4.7361.563
(LXII)202FalseTrue3.82384.328
(LXIII)204FalseTrue3.526101.629
(LXIV)202FalseTrue4.45178.604
(LXV)202FalseTrue3.91182.119
(LXVI)204FalseTrue4.57986.358
(LXVII)111TrueTrue5.64263.423
(LXVIII)204FalseTrue4.55589.653
(LXIX)214FalseTrue4.33101.539
(LXX)204TrueTrue4.78486.358
(LXXI)204TrueTrue4.78486.358
(LXXII)303FalseTrue1.00780.56
(LXXIII)203FalseTrue2.77380.032
(LXXIV)201FalseTrue4.1971.102

Solubility: 0 (extremely low), 1 (very low), 2 (low), 3 (good), 4 (optimal).

Absorption: 0 (good), 1 (moderate), 2 (poor), 3 (very poor).

BBB permeability: 0 (very high), 1 (high), 2 (medium), 3 (low), 4 (undefined).

  11 in total

1.  Potent Antifungal Synergy of Phthalazinone and Isoquinolones with Azoles Against Candida albicans.

Authors:  Aaron D Mood; Ilandari Dewage Udara Anulal Premachandra; Stanley Hiew; Fuqiang Wang; Kevin A Scott; Nathan J Oldenhuis; Haoping Liu; David L Van Vranken
Journal:  ACS Med Chem Lett       Date:  2017-01-11       Impact factor: 4.345

2.  The discovery of phthalazinone-based human H1 and H3 single-ligand antagonists suitable for intranasal administration for the treatment of allergic rhinitis.

Authors:  Panayiotis A Procopiou; Christopher Browning; Jennifer M Buckley; Kenneth L Clark; Lise Fechner; Paul M Gore; Ashley P Hancock; Simon T Hodgson; Duncan S Holmes; Michael Kranz; Brian E Looker; Karen M L Morriss; Daniel L Parton; Linda J Russell; Robert J Slack; Steven L Sollis; Sadie Vile; Clarissa J Watts
Journal:  J Med Chem       Date:  2011-03-07       Impact factor: 7.446

3.  Phenotypes and endotypes of rhinitis and their impact on management: a PRACTALL report.

Authors:  N G Papadopoulos; J A Bernstein; P Demoly; M Dykewicz; W Fokkens; P W Hellings; A T Peters; C Rondon; A Togias; L S Cox
Journal:  Allergy       Date:  2015-02-19       Impact factor: 13.146

4.  Discovery of a potent, selective, and orally bioavailable pyridinyl-pyrimidine phthalazine aurora kinase inhibitor.

Authors:  Victor J Cee; Laurie B Schenkel; Brian L Hodous; Holly L Deak; Hanh N Nguyen; Philip R Olivieri; Karina Romero; Annette Bak; Xuhai Be; Steve Bellon; Tammy L Bush; Alan C Cheng; Grace Chung; Steve Coats; Patrick M Eden; Kelly Hanestad; Paul L Gallant; Yan Gu; Xin Huang; Richard L Kendall; Min-Hwa Jasmine Lin; Michael J Morrison; Vinod F Patel; Robert Radinsky; Paul E Rose; Sandra Ross; Ji-Rong Sun; Jin Tang; Huilin Zhao; Marc Payton; Stephanie D Geuns-Meyer
Journal:  J Med Chem       Date:  2010-09-09       Impact factor: 7.446

Review 5.  Risk of first-generation H(1)-antihistamines: a GA(2)LEN position paper.

Authors:  M K Church; M Maurer; F E R Simons; C Bindslev-Jensen; P van Cauwenberge; J Bousquet; S T Holgate; T Zuberbier
Journal:  Allergy       Date:  2010-02-08       Impact factor: 13.146

6.  Orally active 7-substituted (4-benzylphthalazin-1-yl)-2-methylpiperazin-1-yl]nicotinonitriles as active-site inhibitors of sphingosine 1-phosphate lyase for the treatment of multiple sclerosis.

Authors:  Sven Weiler; Nadine Braendlin; Christian Beerli; Christian Bergsdorf; Anna Schubart; Honnappa Srinivas; Berndt Oberhauser; Andreas Billich
Journal:  J Med Chem       Date:  2014-05-21       Impact factor: 7.446

7.  Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarking.

Authors:  Michael M Mysinger; Michael Carchia; John J Irwin; Brian K Shoichet
Journal:  J Med Chem       Date:  2012-07-05       Impact factor: 7.446

8.  Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness.

Authors:  Michiru Nishita; Seung-Yeol Park; Tadashi Nishio; Koki Kamizaki; ZhiChao Wang; Kota Tamada; Toru Takumi; Ryuju Hashimoto; Hiroki Otani; Gregory J Pazour; Victor W Hsu; Yasuhiro Minami
Journal:  Sci Rep       Date:  2017-01-26       Impact factor: 4.379

9.  Molecular docking, molecular dynamics, and in vitro studies reveal the potential of angiotensin II receptor blockers to inhibit the COVID-19 main protease.

Authors:  Radwan Alnajjar; Ahmed Mostafa; Ahmed Kandeil; Ahmed A Al-Karmalawy
Journal:  Heliyon       Date:  2020-12-03

10.  A BOILED-Egg To Predict Gastrointestinal Absorption and Brain Penetration of Small Molecules.

Authors:  Antoine Daina; Vincent Zoete
Journal:  ChemMedChem       Date:  2016-05-24       Impact factor: 3.466

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  1 in total

1.  Discovery of Some Heterocyclic Molecules as Bone Morphogenetic Protein 2 (BMP-2)-Inducible Kinase Inhibitors: Virtual Screening, ADME Properties, and Molecular Docking Simulations.

Authors:  Amany Belal; Hazem Elkady; Ahmed A Al-Karmalawy; Ali H Amin; Mohammed M Ghoneim; Mohamed El-Sherbiny; Rasha Hamed Al-Serwi; Mohamed Attia Abdou; Mona H Ibrahim; Ahmed B M Mehany
Journal:  Molecules       Date:  2022-08-30       Impact factor: 4.927

  1 in total

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