| Literature DB >> 35636166 |
Huawei Li1, Jia You2, Xi Yang3, Yuanfeng Wei3, Lingnan Zheng3, Yaqin Zhao3, Ying Huang4, Zhao Jin5, Cheng Yi6.
Abstract
BACKGROUND: The cytokine storm (CS) triggered by coronavirus disease 2019 (COVID-19) has caused serious harm to health of humanity and huge economic burden to the world, and there is a lack of effective methods to treat this complication.Entities:
Keywords: Cytokine storm; Experimental verification; Glycyrrhetinic acid; Molecular docking; Network pharmacology
Mesh:
Substances:
Year: 2022 PMID: 35636166 PMCID: PMC9098921 DOI: 10.1016/j.phymed.2022.154153
Source DB: PubMed Journal: Phytomedicine ISSN: 0944-7113 Impact factor: 6.656
Fig. 1The 2D structure of GA and target genes of GA acting on CS. (A) 2D structure of GA. (B) Venn diagram of GA and CS target genes.
The specific information about the action target genes.
| No. | Uniprot ID | Gene Symbol | Gene Name |
|---|---|---|---|
| 1 | P01375 | TNF | TNF-alpha |
| 2 | P05231 | IL6 | Interleukin-6 |
| 3 | P35354 | PTGS2 | Cyclooxygenase-2 |
| 4 | P24723 | PRKCH | Protein kinase C eta |
| 5 | P14902 | IDO1 | Indoleamine 2,3-dioxygenase |
| 6 | Q07869 | PPARA | Peroxisome proliferator-activated receptor alpha |
| 7 | Q03181 | PPARD | Peroxisome proliferator-activated receptor delta |
| 8 | P80365 | HSD11B2 | 11-beta-hydroxysteroid dehydrogenase 2 |
| 9 | Q06124 | PTPN11 | Protein-tyrosine phosphatase 2C |
| 10 | P28845 | HSD11B1 | 11-beta-hydroxysteroid dehydrogenase 1 |
| 11 | O60218 | AKR1B10 | Aldo-keto reductase family 1 member B10 |
| 12 | O14684 | PTGES | Prostaglandin E synthase |
| 13 | P10275 | AR | Androgen Receptor |
| 14 | P18031 | PTPN1 | Protein-tyrosine phosphatase 1B |
| 15 | P17706 | PTPN2 | T-cell protein-tyrosine phosphatase |
| 16 | O00748 | CES2 | Carboxylesterase 2 |
| 17 | P35228 | NOS2 | Nitric oxide synthase, inducible |
| 18 | P11511 | CYP19A1 | Cytochrome P450 19A1 |
| 19 | P08185 | SERPINA6 | Corticosteroid binding globulin |
| 20 | Q99720 | SIGMAR1 | Sigma opioid receptor |
| 21 | P04278 | SHBG | Testis-specific androgen-binding protein |
| 22 | P05093 | CYP17A1 | Cytochrome P450 17A1 |
| 23 | P06401 | PGR | Progesterone receptor |
| 24 | P06276 | BCHE | Butyrylcholinesterase |
| 25 | P04150 | NR3C1 | Glucocorticoid receptor |
| 26 | P56817 | BACE1 | Beta-secretase 1 |
| 27 | P09917 | ALOX5 | Arachidonate 5-lipoxygenase |
| 28 | P30304 | CDC25A | Dual specificity phosphatase Cdc25A |
| 29 | P35398 | RORA | Nuclear receptor ROR-alpha |
| 30 | P27361 | MAPK3 | MAP kinase ERK1 |
| 31 | Q01959 | SLC6A3 | Dopamine transporter |
| 32 | P29350 | PTPN6 | Protein-tyrosine phosphatase 1C |
| 33 | Q13133 | NR1H3 | LXR-alpha |
| 34 | P0DMS8 | ADORA3 | Adenosine A3 receptor |
| 35 | Q92731 | ESR2 | Estrogen receptor beta |
| 36 | P04054 | PLA2G1B | Phospholipase A2 group 1B |
| 37 | P30305 | CDC25B | Dual specificity phosphatase Cdc25B |
| 38 | P23141 | CES1 | Acyl coenzyme A:cholesterol acyltransferase |
| 39 | P10586 | PTPRF | Receptor-type tyrosine-protein phosphatase F (LAR) |
| 40 | P24666 | ACP1 | Low molecular weight phosphotyrosine protein phosphatase |
| 41 | P31213 | SRD5A2 | Steroid 5-alpha-reductase 2 |
| 42 | Q08499 | PDE4D | Phosphodiesterase 4D |
| 43 | P07148 | FABP1 | Fatty acid-binding protein, liver |
| 44 | P08235 | NR3C2 | Mineralocorticoid receptor |
| 45 | P37231 | PPARG | Peroxisome proliferator-activated receptor gamma |
| 46 | P03372 | ESR1 | Estrogen receptor alpha |
| 47 | O75469 | NR1I2 | Pregnane X receptor |
| 48 | P37058 | HSD17B3 | Estradiol 17-beta-dehydrogenase 3 |
| 49 | O00767 | SCD | Acyl-CoA desaturase |
| 50 | Q14994 | NR1I3 | Nuclear receptor subfamily 1 group I member 3 (by homology) |
| 51 | P11413 | G6PD | Glucose-6-phosphate 1-dehydrogenase |
| 52 | Q16850 | CYP51A1 | Cytochrome P450 51 (by homology) |
| 53 | P37268 | FDFT1 | Squalene synthetase |
| 54 | P37059 | HSD17B2 | Estradiol 17-beta-dehydrogenase 2 |
| 55 | P11387 | TOP1 | DNA topoisomerase I |
| 56 | P48147 | PREP | Prolyl endopeptidase |
| 57 | P60033 | CD81 | CD81 antigen |
| 58 | P11388 | TOP2A | DNA topoisomerase II alpha |
| 59 | P04035 | HMGCR | HMG-CoA reductase |
| 60 | O00519 | FAAH | Anandamide amidohydrolase |
| 61 | P15090 | FABP4 | Fatty acid binding protein adipocyte |
| 62 | P05413 | FABP3 | Fatty acid binding protein muscle |
| 63 | Q01469 | FABP5 | Fatty acid binding protein epidermal |
| 64 | P23219 | PTGS1 | Cyclooxygenase-1 |
| 65 | O14746 | TERT | Telomerase reverse transcriptase |
| 66 | P43116 | PTGER2 | Prostanoid EP2 receptor (by homology) |
| 67 | Q8TDU6 | GPBAR1 | G-protein coupled bile acid receptor 1 |
| 68 | P18405 | SRD5A1 | Steroid 5-alpha-reductase 1 |
| 69 | P31645 | SLC6A4 | Serotonin transporter |
| 70 | P20292 | ALOX5AP | 5-lipoxygenase activating protein |
| 71 | Q9Y5Y4 | PTGDR2 | G protein-coupled receptor 44 |
| 72 | P34995 | PTGER1 | Prostanoid EP1 receptor |
| 73 | P29317 | EPHA2 | Ephrin type-A receptor 2 |
| 74 | P35408 | PTGER4 | Prostanoid EP4 receptor (by homology) |
| 75 | P52895 | AKR1C2 | Aldo-keto reductase family 1 member C2 |
| 76 | Q04828 | AKR1C1 | Aldo-keto reductase family 1 member C1 |
| 77 | P15104 | GLUL | Glutamine synthetase |
| 78 | Q15722 | LTB4R | Leukotriene B4 receptor 1 |
| 79 | Q12908 | SLC10A2 | Ileal bile acid transporter |
| 80 | Q00987 | MDM2 | p53-binding protein Mdm-2 |
| 81 | P08254 | MMP3 | Matrix metalloproteinase 3 |
| 82 | P03956 | MMP1 | Matrix metalloproteinase 1 |
| 83 | P08253 | MMP2 | Matrix metalloproteinase 2 |
| 84 | O14842 | FFAR1 | Free fatty acid receptor 1 |
Fig. 2Core targets of GA acting on CS. (A) Core Gene Screening via CytoNCA Plugin. (B) Core gene screening via R language.
Fig. 3The GO enrichment analysis of the action target genes.
Fig. 4The KEGG pathway analysis of action target genes.
Fig. 5Molecular docking of GA with target genes. (A–F)The molecular docking of GA with TNF, IL6, PPARG, MAPK3, PTGS2 and ESR1, respectively.
Total score values & C score values of GA and core proteins.
| Core Gene | PDB ID | Total Score | CSCORE |
|---|---|---|---|
| TNF | 5.05 | 4 | |
| IL6 | 6.04 | 4 | |
| PPARG | 3.57 | 4 | |
| MAPK3 | 5.46 | 4 | |
| PTGS2 | 4.47 | 5 | |
| ESR1 | 5.14 | 4 |
Fig. 6The experimental results of GA inhibition of CS in an in vitro and in vivo studies. (A) Cell viability assay of MH-S cells. (B, C) GA inhibited TNF-α and IL-6 in vitro. (D) GA inhibited total cell count in mouse BALF. (E,F) GA inhibited TNF-α and IL-6 in vivo. *p < 0.05, **p < 0.01,***p < 0.001, ****p < 0.0001, compared with the control group.
Fig. 7Immunohistochemical results of TNF-α and IL-6 in lung tissue (× 200).
Fig. 8The effects of GA on lung injury caused by LPS-induced CS (× 200). (A) NS group. (B) LPS group. (C) DEX group. (D) GA group.