Literature DB >> 35635705

Copy Number Analysis of the Yeast Histone Deacetylase Complex Component Cti6 Directly in Living Cells.

Sviatlana Shashkova1,2, Thomas Nyström3, Mark C Leake4.   

Abstract

Proteins are one of the key components of cellular life that play a crucial role in most biological processes. Therefore, quantification of protein copy numbers is essential for revealing and better understanding of cellular behavior and functions. Here we describe a single-molecule fluorescence-based method of protein copy number quantification directly in living cells. This enables quick and reliable estimations and comparison of the protein of interest abundance without implementing large-scale studies.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Copy number; Histone deacetylase; Living cells; Single-molecule

Mesh:

Substances:

Year:  2022        PMID: 35635705     DOI: 10.1007/978-1-0716-2221-6_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Cti6, a PHD domain protein, bridges the Cyc8-Tup1 corepressor and the SAGA coactivator to overcome repression at GAL1.

Authors:  Manolis Papamichos-Chronakis; Theodoros Petrakis; Eleni Ktistaki; Irini Topalidou; Dimitris Tzamarias
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

2.  A chemostat array enables the spatio-temporal analysis of the yeast proteome.

Authors:  Nicolas Dénervaud; Johannes Becker; Ricard Delgado-Gonzalo; Pascal Damay; Arun S Rajkumar; Michael Unser; David Shore; Felix Naef; Sebastian J Maerkl
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

3.  Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

Authors:  Lyris M F de Godoy; Jesper V Olsen; Jürgen Cox; Michael L Nielsen; Nina C Hubner; Florian Fröhlich; Tobias C Walther; Matthias Mann
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

4.  Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis.

Authors:  Yolanda T Chong; Judice L Y Koh; Helena Friesen; Supipi Kaluarachchi Duffy; Kaluarachchi Duffy; Michael J Cox; Alan Moses; Jason Moffat; Charles Boone; Brenda J Andrews
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

5.  Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome.

Authors:  Brandon Ho; Anastasia Baryshnikova; Grant W Brown
Journal:  Cell Syst       Date:  2018-01-17       Impact factor: 10.304

6.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

7.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Authors:  P T Spellman; G Sherlock; M Q Zhang; V R Iyer; K Anders; M B Eisen; P O Brown; D Botstein; B Futcher
Journal:  Mol Biol Cell       Date:  1998-12       Impact factor: 4.138

8.  The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures.

Authors:  George S Davidson; Ray M Joe; Sushmita Roy; Osorio Meirelles; Chris P Allen; Melissa R Wilson; Phillip H Tapia; Elaine E Manzanilla; Anne E Dodson; Swagata Chakraborty; Mark Carter; Susan Young; Bruce Edwards; Larry Sklar; Margaret Werner-Washburne
Journal:  Mol Biol Cell       Date:  2011-02-02       Impact factor: 4.138

9.  Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress.

Authors:  Johnny M Tkach; Askar Yimit; Anna Y Lee; Michael Riffle; Michael Costanzo; Daniel Jaschob; Jason A Hendry; Jiongwen Ou; Jason Moffat; Charles Boone; Trisha N Davis; Corey Nislow; Grant W Brown
Journal:  Nat Cell Biol       Date:  2012-07-29       Impact factor: 28.824

10.  Asymmetric Inheritance of Aggregated Proteins and Age Reset in Yeast Are Regulated by Vac17-Dependent Vacuolar Functions.

Authors:  Sandra Malmgren Hill; Xinxin Hao; Johan Grönvall; Stephanie Spikings-Nordby; Per O Widlund; Triana Amen; Anna Jörhov; Rebecca Josefson; Daniel Kaganovich; Beidong Liu; Thomas Nyström
Journal:  Cell Rep       Date:  2016-07-19       Impact factor: 9.423

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