Literature DB >> 35633819

Extraction of Hidden Science from Nanoscale Images.

Kristopher B Barr1, Naihao Chiang2, Andrea L Bertozzi3, Jérôme Gilles4, Stanley J Osher3, Paul S Weiss5.   

Abstract

Scanning probe microscopies and spectroscopies enable investigation of surfaces and even buried interfaces down to the scale of chemical-bonding interactions, and this capability has been enhanced with the support of computational algorithms for data acquisition and image processing to explore physical, chemical, and biological phenomena. Here, we describe how scanning probe techniques have been enhanced by some of these recent algorithmic improvements. One improvement to the data acquisition algorithm is to advance beyond a simple rastering framework by using spirals at constant angular velocity then switching to constant linear velocity, which limits the piezo creep and hysteresis issues seen in traditional acquisition methods. One can also use image-processing techniques to model the distortions that appear from tip motion effects and to make corrections to these images. Another image-processing algorithm we discuss enables researchers to segment images by domains and subdomains, thereby highlighting reactive and interesting disordered sites at domain boundaries. Lastly, we discuss algorithms used to examine the dipole direction of individual molecules and surface domains, hydrogen bonding interactions, and molecular tilt. The computational algorithms used for scanning probe techniques are still improving rapidly and are incorporating machine learning at the next level of iteration. That said, the algorithms are not yet able to perform live adjustments during data recording that could enhance the microscopy and spectroscopic imaging methods significantly.

Entities:  

Keywords:  data acquisition; data processing; scanning probe microscopy; scanning tunneling microscopy

Year:  2021        PMID: 35633819      PMCID: PMC9135097          DOI: 10.1021/acs.jpcc.1c08712

Source DB:  PubMed          Journal:  J Phys Chem C Nanomater Interfaces        ISSN: 1932-7447            Impact factor:   4.177


  38 in total

Review 1.  Where Do We Stand with Super-Resolution Optical Microscopy?

Authors:  Karin Nienhaus; G Ulrich Nienhaus
Journal:  J Mol Biol       Date:  2015-12-29       Impact factor: 5.469

2.  Single-Molecule Chemistry with Surface- and Tip-Enhanced Raman Spectroscopy.

Authors:  Alyssa B Zrimsek; Naihao Chiang; Michael Mattei; Stephanie Zaleski; Michael O McAnally; Craig T Chapman; Anne-Isabelle Henry; George C Schatz; Richard P Van Duyne
Journal:  Chem Rev       Date:  2016-12-08       Impact factor: 60.622

3.  Single-Molecule Spectroscopy, Imaging, and Photocontrol: Foundations for Super-Resolution Microscopy (Nobel Lecture).

Authors:  W E William E Moerner
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-18       Impact factor: 15.336

Review 4.  Single Molecules, Cells, and Super-Resolution Optics (Nobel Lecture).

Authors:  Eric Betzig
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-18       Impact factor: 15.336

5.  Nanoscopy with Focused Light (Nobel Lecture).

Authors:  Stefan W Hell
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-18       Impact factor: 15.336

6.  Hexagons to Ribbons: Flipping Cyanide on Au{111}.

Authors:  Andrew I Guttentag; Kristopher K Barr; Tze-Bin Song; Kevin V Bui; Jacob N Fauman; Leticia F Torres; David D Kes; Adina Ciomaga; Jérôme Gilles; Nichole F Sullivan; Yang Yang; David L Allara; Michael Zharnikov; Paul S Weiss
Journal:  J Am Chem Soc       Date:  2016-11-23       Impact factor: 15.419

Review 7.  From the bottom up: dimensional control and characterization in molecular monolayers.

Authors:  Shelley A Claridge; Wei-Ssu Liao; John C Thomas; Yuxi Zhao; Huan H Cao; Sarawut Cheunkar; Andrew C Serino; Anne M Andrews; Paul S Weiss
Journal:  Chem Soc Rev       Date:  2013-04-07       Impact factor: 54.564

8.  Mapping Buried Hydrogen-Bonding Networks.

Authors:  John C Thomas; Dominic P Goronzy; Konstantin Dragomiretskiy; Dominique Zosso; Jérôme Gilles; Stanley J Osher; Andrea L Bertozzi; Paul S Weiss
Journal:  ACS Nano       Date:  2016-04-25       Impact factor: 15.881

9.  Delayed emergence of subdiffraction-sized mutant huntingtin fibrils following inclusion body formation.

Authors:  Steffen J Sahl; Lana Lau; Willianne I M Vonk; Lucien E Weiss; Judith Frydman; W E Moerner
Journal:  Q Rev Biophys       Date:  2015-09-09       Impact factor: 5.318

10.  Geometric imaging of borophene polymorphs with functionalized probes.

Authors:  Xiaolong Liu; Luqing Wang; Shaowei Li; Matthew S Rahn; Boris I Yakobson; Mark C Hersam
Journal:  Nat Commun       Date:  2019-04-09       Impact factor: 14.919

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