| Literature DB >> 35632254 |
Nadiah Baghdadi1, Ahmed S Maklad2,3, Amer Malki2, Mohanad A Deif4.
Abstract
Sarcoidosis is frequently misdiagnosed as tuberculosis (TB) and consequently mistreated due to inherent limitations in radiological presentations. Clinically, to distinguish sarcoidosis from TB, physicians usually employ biopsy tissue diagnosis and blood tests; this approach is painful for patients, time-consuming, expensive, and relies on techniques prone to human error. This study proposes a computer-aided diagnosis method to address these issues. This method examines seven EfficientNet designs that were fine-tuned and compared for their abilities to categorize X-ray images into three categories: normal, TB-infected, and sarcoidosis-infected. Furthermore, the effects of stain normalization on performance were investigated using Reinhard's and Macenko's conventional stain normalization procedures. This procedure aids in improving diagnostic efficiency and accuracy while cutting diagnostic costs. A database of 231 sarcoidosis-infected, 563 TB-infected, and 1010 normal chest X-ray images was created using public databases and information from several national hospitals. The EfficientNet-B4 model attained accuracy, sensitivity, and precision rates of 98.56%, 98.36%, and 98.67%, respectively, when the training X-ray images were normalized by the Reinhard stain approach, and 97.21%, 96.9%, and 97.11%, respectively, when normalized by Macenko's approach. Results demonstrate that Reinhard stain normalization can improve the performance of EfficientNet -B4 X-ray image classification. The proposed framework for identifying pulmonary sarcoidosis may prove valuable in clinical use.Entities:
Keywords: EfficientNets; chest X-rays; pulmonary sarcoidosis; sarcoidosis detection; stain normalization; tuberculosis
Mesh:
Year: 2022 PMID: 35632254 PMCID: PMC9144943 DOI: 10.3390/s22103846
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.847
Image categories and their collection sources.
| Class | Source | Number of Images |
|---|---|---|
| Normal | Kaggle | 360 |
| NLM database | 400 | |
| RSNA CXR dataset | 250 | |
| TB | Belarus database | 169 |
| NLM database | 394 | |
| Sarcoidosis | Six national hospitals in Egypt | 231 |
Figure 1Different classes of chest X-ray images: (a) normal, (b) sarcoidosis-infected, (c) TB-infected.
Figure 2Schematic illustration of EfficientNet-B0 architecture.
Number of parameters in each EfficientNet and its corresponding input image size.
| EfficientNet Model | Input Image Size | Number Parameters |
|---|---|---|
| B0 | 224 × 224 | 4.3 |
| B1 | 240 × 240 | 6.8 |
| B2 | 260 × 260 | 8 |
| B3 | 300 × 300 | 11 |
| B4 | 380 × 380 | 17.9 |
| B5 | 456 × 456 | 28.7 |
| B6 | 528 × 528 | 41.1 |
Figure 3Schematic illustration of VGG16 architecture.
Figure 4Schematic illustration of the AlexNet architecture.
Figure 5Schematic illustration of the ResNet50 architecture.
Figure 6Schematic illustration of the Inception V3 architecture.
Figure 7The general methodology for X-ray image classification employing a deep learning approach.
The settings of the data augmentation applied to the stain-normalized X-ray images.
| Augmentation Type | Value |
|---|---|
| Rescaling | According to each EfficientNet model |
| Rotation range | |
| Range of width shifts | 0.1 |
| Range of height shift | 0.1 |
Figure 8Stain-normalization outcomes: (a) original image, (b) Reinhard approach, and (c) Macenko approach.
Figure 9Images of chest X-rays after using random data augmentation techniques: (a) original, (b) after clockwise rotation by 10 degrees, (c) after anti-clockwise rotation by 10 degrees, and (d) after 10% translation.
The hyper-parameter setting for EfficientNet architectures.
| Hyper-Parameter | Setting |
|---|---|
| Patience | 5 |
| Learning rate | 0.001 |
| Size of mini-batch | 32 |
| Optimizer | SGD |
| Activation function | Softmax |
Figure 10Performance accuracy for the EfficientNet architectures with non-stain-normalized and stain-normalized images.
Precision sensitivity for the EfficientNet models with the stain-normalization method.
| EfficientNet | Precision | Sensitivity | ||
|---|---|---|---|---|
| Reinhard | Macenko | Reinhard | Macenko | |
| B0 | 94.88 | 92.9 | 94.56 | 92.9 |
| B1 | 95.16 | 93.69 | 95.82 | 93.48 |
| B2 | 95.16 | 93.69 | 95.82 | 93.48 |
| B3 | 93.49 | 93.05 | 92.78 | 92.78 |
| B4 | 98.67 | 97.11 | 98.36 | 96.9 |
| B5 | 90.74 | 94.1 | 90.63 | 93.97 |
| B6 | 91.34 | 91.15 | 90.36 | 90.21 |
Figure 11Comparison between the EfficientNet-B4 model and the state-of-the-art approaches.
Comparison between conventional diagnostic tests for sarcoidosis, tuberculosis, and the proposed approach.
| Test Type | Indication for Tuberculosis | Indication for Sarcoidosis | Proposed Approach |
|---|---|---|---|
| Physical examination | Coughing for three or more weeks, coughing up blood or mucus, chest pain, weight loss, fatigue and fever [ | Fatigue, fever, weight loss, and erythema nodosum [ | Not required |
| Peripheral blood count | High lymphocyte count [ | ||
| Renal function tests | Unclear for tuberculosis diagnosis [ | High level of calcium, urea, and creatinine [ | |
| Urine analysis | Urine analysis currently offers little utility for the diagnosis of tuberculosis [ | Hypercalciurea [ | |
| Pulmonary function tests | Just used to indicate pulmonary involvement and disease severity, but not to determine whether TB or sarcoidosis is present [ | ||
| Tissue biopsy | This method is probably the most useful one for the diagnosis of bone and joint tuberculosis [ | For the presence of granuloma
(lungs, lymph node, skin, salivary gland, conjunctiva) [ | |
| Bronchial biopsy | Transbronchial lung biopsy (TBLB) is a helpful examination for pulmonary tuberculosis [ | Flexible bronchoscopy has a very high diagnostic yield in all stages of suspected sarcoidosis [ | |
| Tuberculin skin test (Mantoux) | Determining whether a person is infected with mycobacterium tuberculosis [ | Negative in most sarcoidosis patients [ | |
| Electrocardiogram (ECG) | Patients with pulmonary tuberculosis often have a normal ECG [ | Repolarization disturbances, ectopic beats, and rhythm abnormalities [ | |
| MRI | MRI is the most sensitive modality for early diagnosis and follow-up of spinal TB [ | Detect neurological involvement, spinal cord, meninges, skull vault, and pituitary lesions [ | Not investigated to improve diagnostic accuracy |
| Chest X-ray | A posterior-anterior chest radiograph is used to detect chest abnormalities [ | Required | |
Comparison between the proposed approach and conventional diagnostic tests for sarcoidosis and tuberculosis.
| Cases | Number of Actual Cases | EfficientNet-B4 | Committees of Consultants |
|---|---|---|---|
| Normal | 2 | 2 (100%) | 2 (100%) |
| Tuberculosis | 3 | 2 (67%) | 1 (33%) |
| Sarcoidosis | 5 | 3 (60%) | 0 (0%) |