Literature DB >> 35630129

Deterministic Lateral Displacement (DLD) Analysis Tool Utilizing Machine Learning towards High-Throughput Separation.

Eric Gioe1, Mohammed Raihan Uddin1, Jong-Hoon Kim1, Xiaolin Chen1.   

Abstract

Deterministic lateral displacement (DLD) is a microfluidic method for the continuous separation of particles based on their size. There is growing interest in using DLD for harvesting circulating tumor cells from blood for further assays due to its low cost and robustness. While DLD is a powerful tool and development of high-throughput DLD separation devices holds great promise in cancer diagnostics and therapeutics, much of the experimental data analysis in DLD research still relies on error-prone and time-consuming manual processes. There is a strong need to automate data analysis in microfluidic devices to reduce human errors and the manual processing time. In this work, a reliable particle detection method is developed as the basis for the DLD separation analysis. Python and its available packages are used for machine vision techniques, along with existing identification methods and machine learning models. Three machine learning techniques are implemented and compared in the determination of the DLD separation mode. The program provides a significant reduction in video analysis time in DLD separation, achieving an overall particle detection accuracy of 97.86% with an average computation time of 25.274 s.

Entities:  

Keywords:  analysis automation; deterministic lateral displacement; high throughput; machine learning; machine vision; separation and purification

Year:  2022        PMID: 35630129      PMCID: PMC9145823          DOI: 10.3390/mi13050661

Source DB:  PubMed          Journal:  Micromachines (Basel)        ISSN: 2072-666X            Impact factor:   3.523


  11 in total

1.  Continuous particle separation through deterministic lateral displacement.

Authors:  Lotien Richard Huang; Edward C Cox; Robert H Austin; James C Sturm
Journal:  Science       Date:  2004-05-14       Impact factor: 47.728

2.  A computational approach to edge detection.

Authors:  J Canny
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  1986-06       Impact factor: 6.226

3.  A practical guide to intelligent image-activated cell sorting.

Authors:  Akihiro Isozaki; Hideharu Mikami; Kotaro Hiramatsu; Shinya Sakuma; Yusuke Kasai; Takanori Iino; Takashi Yamano; Atsushi Yasumoto; Yusuke Oguchi; Nobutake Suzuki; Yoshitaka Shirasaki; Taichiro Endo; Takuro Ito; Kei Hiraki; Makoto Yamada; Satoshi Matsusaka; Takeshi Hayakawa; Hideya Fukuzawa; Yutaka Yatomi; Fumihito Arai; Dino Di Carlo; Atsuhiro Nakagawa; Yu Hoshino; Yoichiroh Hosokawa; Sotaro Uemura; Takeaki Sugimura; Yasuyuki Ozeki; Nao Nitta; Keisuke Goda
Journal:  Nat Protoc       Date:  2019-07-05       Impact factor: 13.491

4.  Automated detection and sorting of microencapsulation via machine learning.

Authors:  Albert Chu; Du Nguyen; Sachin S Talathi; Aaron C Wilson; Congwang Ye; William L Smith; Alan D Kaplan; Eric B Duoss; Joshua K Stolaroff; Brian Giera
Journal:  Lab Chip       Date:  2019-05-14       Impact factor: 6.799

5.  Effect of angle-of-attacks on deterministic lateral displacement (DLD) with symmetric airfoil pillars.

Authors:  Kawkab Ahasan; Christopher M Landry; Xiaolin Chen; Jong-Hoon Kim
Journal:  Biomed Microdevices       Date:  2020-06-03       Impact factor: 2.838

6.  A higher number of circulating tumor cells (CTC) in peripheral blood indicates poor prognosis in prostate cancer patients--a meta-analysis.

Authors:  Fu-Bin Wang; Xue-Qin Yang; Shuo Yang; Bi-Cheng Wang; Mao-Hui Feng; Jian-Cheng Tu
Journal:  Asian Pac J Cancer Prev       Date:  2011

7.  Numerical study of dielectrophoresis-modified inertial migration for overlapping sized cell separation.

Authors:  Mohammed Khan; Xiaolin Chen
Journal:  Electrophoresis       Date:  2022-01-22       Impact factor: 3.535

8.  Real-time Image Processing for Microscopy-based Label-free Imaging Flow Cytometry in a Microfluidic Chip.

Authors:  Young Jin Heo; Donghyeon Lee; Junsu Kang; Keondo Lee; Wan Kyun Chung
Journal:  Sci Rep       Date:  2017-09-14       Impact factor: 4.379

Review 9.  Array programming with NumPy.

Authors:  Charles R Harris; K Jarrod Millman; Stéfan J van der Walt; Ralf Gommers; Pauli Virtanen; David Cournapeau; Eric Wieser; Julian Taylor; Sebastian Berg; Nathaniel J Smith; Robert Kern; Matti Picus; Stephan Hoyer; Marten H van Kerkwijk; Matthew Brett; Allan Haldane; Jaime Fernández Del Río; Mark Wiebe; Pearu Peterson; Pierre Gérard-Marchant; Kevin Sheppard; Tyler Reddy; Warren Weckesser; Hameer Abbasi; Christoph Gohlke; Travis E Oliphant
Journal:  Nature       Date:  2020-09-16       Impact factor: 49.962

Review 10.  SciPy 1.0: fundamental algorithms for scientific computing in Python.

Authors:  Pauli Virtanen; Ralf Gommers; Travis E Oliphant; Matt Haberland; Tyler Reddy; David Cournapeau; Evgeni Burovski; Pearu Peterson; Warren Weckesser; Jonathan Bright; Stéfan J van der Walt; Matthew Brett; Joshua Wilson; K Jarrod Millman; Nikolay Mayorov; Andrew R J Nelson; Eric Jones; Robert Kern; Eric Larson; C J Carey; İlhan Polat; Yu Feng; Eric W Moore; Jake VanderPlas; Denis Laxalde; Josef Perktold; Robert Cimrman; Ian Henriksen; E A Quintero; Charles R Harris; Anne M Archibald; Antônio H Ribeiro; Fabian Pedregosa; Paul van Mulbregt
Journal:  Nat Methods       Date:  2020-02-03       Impact factor: 28.547

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.