| Literature DB >> 35630110 |
Prosper Oyibo1,2, Satyajith Jujjavarapu3, Brice Meulah4,5, Tope Agbana1, Ingeborg Braakman3, Angela van Diepen4, Michel Bengtson4, Lisette van Lieshout4, Wellington Oyibo2, Gleb Vdovine1, Jan-Carel Diehl3.
Abstract
For many parasitic diseases, the microscopic examination of clinical samples such as urine and stool still serves as the diagnostic reference standard, primarily because microscopes are accessible and cost-effective. However, conventional microscopy is laborious, requires highly skilled personnel, and is highly subjective. Requirements for skilled operators, coupled with the cost and maintenance needs of the microscopes, which is hardly done in endemic countries, presents grossly limited access to the diagnosis of parasitic diseases in resource-limited settings. The urgent requirement for the management of tropical diseases such as schistosomiasis, which is now focused on elimination, has underscored the critical need for the creation of access to easy-to-use diagnosis for case detection, community mapping, and surveillance. In this paper, we present a low-cost automated digital microscope-the Schistoscope-which is capable of automatic focusing and scanning regions of interest in prepared microscope slides, and automatic detection of Schistosoma haematobium eggs in captured images. The device was developed using widely accessible distributed manufacturing methods and off-the-shelf components to enable local manufacturability and ease of maintenance. For proof of principle, we created a Schistosoma haematobium egg dataset of over 5000 images captured from spiked and clinical urine samples from field settings and demonstrated the automatic detection of Schistosoma haematobium eggs using a trained deep neural network model. The experiments and results presented in this paper collectively illustrate the robustness, stability, and optical performance of the device, making it suitable for use in the monitoring and evaluation of schistosomiasis control programs in endemic settings.Entities:
Keywords: Schistosoma; artificial intelligence; autofocus; diagnosis; digital microscope; distributed manufacturing; low resources settings; parasites; slide scanner
Year: 2022 PMID: 35630110 PMCID: PMC9146062 DOI: 10.3390/mi13050643
Source DB: PubMed Journal: Micromachines (Basel) ISSN: 2072-666X Impact factor: 3.523
Figure 1(a) Schematic diagram of the Schistoscope optical train (b) Region of interest showing the Z-axis consisting of a mechanical slider and optical setup (c) Region of interest showing the sample stage mounted on the X and Y slider mechanism (d) Exterior of the Schistoscope device (embodiment).
Figure 2Automated image grid acquisition of Schistosoma eggs from a urine filter membrane. Blue region of interest shows individual sub-images, red and green regions of interest are S. mansoni and S. haematobium eggs, respectively, present in the urine sample. Enlarged areas show the eggs at 300% digital zoom.
Figure 3XY positioning accuracy. (a) the path taken by the sample stage. (b–d) the displacement of three eggs in the respective FoV from their initial positions in the captured frame from the first cycle.
Figure 4Resolution limit of the Schistoscope. (a) Slanted-edge image with selected rectangular region of interest (b) Edge spread function curve (c) Line spread function curve (d) Modulation transfer function curve with a resolution limit of 307 lp/mm.
Figure 5Optical performance of the Schistoscope. (a) Schistoscope (NA 0.1) and (b) conventional microscope (NA 0.25) images of fecal smear containing Schistosoma haematobium eggs. Enlarged ROIs show similar optical qualities.
Figure 6Captured images of intestinal parasites using the Schistoscope. Fecal smears of (a) region of interest showing Schistosoma mansoni eggs. (b) region of interest showing hookworm eggs.
Figure 7Visual comparison of semantic segmentation of images in test dataset (a,b) sample images from spiked urine samples (c–f) sample images from clinical urine samples.
Figure 8Quantitative result of the predicted egg counts per captured FoV image (a) visual summary of the egg counts in test images with 0–10 actual egg count (~98% of the test images) (b) Scatter plot of test images with actual egg counts greater than 10.