| Literature DB >> 35628191 |
Igor V Ryzhov1, Alexey V Eroshin1, Yuriy A Zhabanov1, Daniil N Finogenov1, Pavel A Stuzhin1.
Abstract
Electronic and geometric structures of metal-free, Al, Ga and In complexes with tetrapyrazinoporphyrazine (TPyzPA) and octachlorotetrapyrazinoporphyrazine (TPyzPACl8) were investigated by density functional theory (DFT) calculations and compared in order to study the effect of chlorination on the structure and properties of these macrocycles. The nature of the bonds between metal atoms and nitrogen atoms was described using the NBO-analysis. Simulation and interpretation of electronic spectra were performed with the use of time-dependent density functional theory (TDDFT). A description of calculated IR spectra was carried out based on the analysis of the distribution of the potential energy of normal vibrational coordinates.Entities:
Keywords: DFT study; electronic spectra; molecular and electronic structure; octachlorotetrapyrazinoporphyrazine; tetrapyrazinoporphyrazine; vibrational spectra
Mesh:
Year: 2022 PMID: 35628191 PMCID: PMC9141967 DOI: 10.3390/ijms23105379
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1Molecular structures of the Al(III), Ga(III) and In(III) complexes with pyrazinoporphyrazine (M(Cl)TPyzPA) (a), octachloropyrazinoporphyrazines (M(Cl)TPyzPACl8) (b) and metal-free molecules ((c) and (d), respectively) with atom labeling.
Internuclear distances (re, in Å) and valence angles (∠, in deg.) of the equilibrium structures by PBE0-D3/def2-TZVP calculations.
| Al(Cl)TPyzPA | Ga(Cl)TPyzPA | In(Cl)TPyzPA | H2TPyzPA | |
|---|---|---|---|---|
| Symmetry |
|
|
|
|
| Distances | ||||
| M-Np/M-Np′ | 1.981 | 2.022 | 2.161 | - |
| M-Clax | 2.145 | 2.187 | 2.336 | - |
| Np-Cα/Np′-Cα′ | 1.371 | 1.367 | 1.364 | 1.368/1.355 |
| Cα-Nm/Cα′-Nm | 1.308 | 1.310 | 1.316 | 1.304/1.321 |
| Cα-Cβ/Cα′-Cβ′ | 1.450 | 1.453 | 1.458 | 1.450/1.464 |
| Cβ-Cβ/Cβ′-Cβ′ | 1.391 | 1.393 | 1.399 | 1.401/1.393 |
| Cβ-Nd/Cβ′-Nd′ | 1.328 | 1.328 | 1.326 | 1.329/1.324 |
| Nd-Cγ/Nd′-Cγ′ | 1.322 | 1.322 | 1.323 | 1.320/1.327 |
| Cγ-Cγ/Cγ′-Cγ′ | 1.408 | 1.407 | 1.405 | 1.408/1.401 |
| Cγ-H/Cγ′-H’ | 1.086 | 1.086 | 1.086 | 1.086/1.086 |
| (Np…Np)opp | 3.859 | 3.918 | 4.037 | 4.054/3.899 |
| (Np…Np)adj | 2.728 | 2.770 | 2.854 | 2.812 |
| P 1 | 21.432 | 21.416 | 21.440 | 21.376 |
| Bond angles | ||||
| 103.1 | 104.3 | 110.9 | - | |
| 125.2 | 124.5 | 123.6 | 123.2 | |
| 127.9 | 128.0 | 128.0 | 128.5/128.1 | |
| 122.5 | 123.4 | 125.5 | 124.2 | |
| 129.8 | 129.8 | 129.8 | 129.0/130.6 | |
| 113.2 | 113.3 | 113.6 | 113.6/113.3 | |
| M-X 2 | 0.448 | 0.499 | 0.772 | - |
| α 3 | 175.5 | 174.3 | 164.7 | 180 |
| Al(Cl)TPyzPACl8 | Ga(Cl)TPyzPACl8 | In(Cl)TPyzPACl8 | H2TPyzPACl8 | |
| Symmetry |
|
|
|
|
| Distances | ||||
| M-Np/M-Np′ | 1.980 | 2.021 | 2.162 | - |
| M-Clax | 2.142 | 2.183 | 2.332 | - |
| Np-Cα/Np′-Cα′ | 1.372 | 1.368 | 1.364 | 1.368/1.356 |
| Cα-Nm/Cα′-Nm | 1.308 | 1.310 | 1.316 | 1.304/1.321 |
| Cα-Cβ/Cα′-Cβ′ | 1.447 | 1.450 | 1.455 | 1.448/1.461 |
| Cβ-Cβ/Cβ′-Cβ′ | 1.384 | 1.387 | 1.392 | 1.394/1.386 |
| Cβ-Nd/Cβ′-Nd′ | 1.330 | 1.329 | 1.328 | 1.330/1.325 |
| Nd-Cγ/Nd′-Cγ′ | 1.305 | 1.306 | 1.307 | 1.304/1.310 |
| Cγ-Cγ/Cγ′-Cγ′ | 1.433 | 1.432 | 1.430 | 1.433/1.424 |
| Cγ-Cl/Cγ′-Cl′ | 1.709 | 1.709 | 1.709 | 1.709/1.712 |
| (Np…Np)opp | 3.856 | 3.915 | 4.031 | 4.051/3.892 |
| (Np…Np)adj | 2.726 | 2.768 | 2.850 | 2.809 |
| P 1 | 21.440 | 21.424 | 21.440 | 21.376 |
| Bond angles | ||||
| 103.2 | 104.5 | 111.2 | - | |
| 125.2 | 124.5 | 123.5 | 123.3 | |
| 128.0 | 128.1 | 128.1 | 128.5/128.2 | |
| 122.3 | 123.3 | 125.3 | 124.0 | |
| 130.3 | 130.3 | 130.3 | 129.5/131.1 | |
| 114.9 | 115.0 | 115.2 | 115.3/114.9 | |
| M-X 2 | 0.451 | 0.504 | 0.782 | - |
| A 3 | 175.3 | 174.0 | 164.6 | 180 |
1 P is the coordination cavity perimeter (in Å). 2 X is dummy atom located in center between Np atoms. 3 α is the dihedral angle between planes of opposite pyrrole rings.
Figure 2Schemes of the dominant donor–acceptor interactions between Ga and TPyzPA ligand. (a) The result of the orbital interaction of the type LP(N) → 4s(Ga) (E(2) = 59.2 kcal mol−1); (b) the result of the orbital interaction of the type LP(N) → 4px(Ga) (E(2) = 30.7 kcal mol−1); (c) the result of the orbital interaction of the type LP(N) → 4py(Ga) (E(2) = 30.7 kcal mol−1); (d) the result of the orbital interaction of the type LP(N) → 4pz(Ga) (E(2) = 14.3 kcal mol−1). Only one of the four corresponding interactions is demonstrated.
Selected parameters of M(Cl)PyzPA complexes from NBO calculations.
| Al(Cl) | Al(Cl) TPyzPACl8 | Ga(Cl) | Ga(Cl) | In(Cl) | In(Cl) | |
|---|---|---|---|---|---|---|
| −6.329 | −6.803 | −6.362 | −6.836 | −6.411 | −6.882 | |
| −3.815 | −4.294 | −3.829 | −4.308 | −3.864 | −4.343 | |
| ∆ | 2.514 | 2.509 | 2.533 | 2.528 | 2.547 | 2.539 |
| 1.718 | 1.716 | 1.637 | 1.635 | 1.694 | 1.692 | |
| −0.651 | −0.651 | −0.631 | −0.631 | −0.623 | −0.623 | |
| −0.550 | −0.545 | −0.523 | −0.518 | −0.528 | −0.521 | |
| configuration | 3s0.423p0.83 | 3s0.423p0.83 | 4s0.534p0.81 | 4s0.534p0.81 | 5s0.545p0.76 | 5s0.545p0.76 |
| ∑ | 526.0 | 526.5 | 539.6 | 539.0 | 510.7 | 507.8 |
| 0.335 | 0.330 | 0.343 | 0.342 | 0.327 | 0.325 | |
| 1.981 | 1.980 | 2.022 | 2.021 | 2.161 | 2.162 |
Figure 3Simulated (solid lines) and experimental (dashed lines) electronic absorption spectra for M(Cl)TpyzPA and M(Cl)TPyzPACl8 (M = Al, Ga, In) and its metal-free complexes.
Calculated composition of the lowest excited states and corresponding oscillator strengths for TPyzPA and TPyzPzCl8 complexes.
| Al(Cl)TPyzPA | Al(Cl)TPyzPACl8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| State | Composition (%) | λ, nm |
| exp. λ, nm | State | Composition (%) | λ, nm |
| exp. λ, nm |
| 11E | 570 | 0.31 | 11E | 576 | 0.37 | 643 | |||
| 71E | 327 | 0.07 | 41E | 377 | 0.37 | ||||
| 91E | 318 | 1.00 | 81E | 331 | 0.95 | 363 | |||
| Ga(Cl)TPyzPA | Ga(Cl)TPyzPACl8 | ||||||||
| State | Composition (%) | λ, nm |
| exp. λ, nm | State | Composition (%) | λ, nm |
| exp. λ, nm |
| 11E | 565 | 0.32 | 11E | 571 | 0.38 | 638 | |||
| 71E | 333 | 0.05 | 41E | 381 | 0.31 | ||||
| 91E | 319 | 0.95 | 81E | 337 | 1.03 | 360 | |||
| In(Cl)TPyzPA | In(Cl)TPyzPACl8 | ||||||||
| State | Composition (%) | λ, nm |
| exp. λ, nm | State | Composition (%) | λ, nm |
| exp. λ, nm |
| 11E | 562 | 0.32 | 589 | 11E | 569 | 0.38 | 649 | ||
| 71E | 336 | 0.04 | 335 | 41E | 386 | 0.26 | |||
| 91E | 320 | 0.98 | 81E | 336 | 1.05 | 339 | |||
| H2TPyzPA | H2 TPyzPACl8 | ||||||||
| State | Composition (%) | λ, nm |
| exp. λ, nm | State | Composition (%) | λ, nm |
| exp. λ, nm |
| 11B1u | 555 | 0.35 | 645 | 11B1u | 560 | 0.43 | 656 | ||
| 11B3u | 552 | 0.33 | 611 | 11B3u | 560 | 0.39 | 626 | ||
| 21B3u | 382 | 0.12 | 31B3u | 364 | 0.78 | 358 | |||
| 41B3u | 315 | 1.32 | 330 | 41B1u | 362 | 0.26 | 358 | ||
| 41B1u | 311 | 0.29 | 41B3u | 345 | 0.13 | ||||
| 51B1u | 306 | 0.94 | 51B3u | 319 | 0.88 | ||||
| 51B1u | 316 | 1.34 | |||||||
Figure 4Molecular orbitals (MO) level diagram for H2TPyzPA, H2TPyzPACl8, M(Cl)TPyzPA and M(Cl)TPyzPACl8 complexes. The values of higher occupied molecular orbital–lowest unoccupied molecular orbital (HOMO–LUMO) gaps are given in eV.
Figure 5Calculated IR spectra of M(Cl)TPyzPA (a) and M(Cl)TPyzPACl8 (b).
Assignment of the IR vibrations of the M(Cl)TPyzPA and M(Cl)TPyzPACl8 complexes.
| Frequency, cm−1 | Irel, % | Symmetry | Assignment 1 | Exp, cm−1 |
|---|---|---|---|---|
| H2TPyzPA | KBr [ | |||
| 1091 (ω86) | 78 | B1u | r(Np-Cα) (29), r(Nm-Cα) (18), r(Nd-Cγ) (10), r(Cγ-Cγ) (12) | 1040 |
| 1157 (ω90) | 81 | B2u | r(Np-Cα) (23), r(Nm-Cα) (18), r(Cα-Cβ) (6), r(Cβ-Nd) (8), r(Nd-Cγ) (6), φ(Cα-Np-Hc) (8), φ(Cβ-Nd-Cγ) (7) | 1121 |
| 1242 (ω95) | 100 | B1u | r(Cα-Cβ) (14), r(Cβ-Cβ) (10), r(Nd-Cγ) (10), φ(Nd-Cγ-Hs) (7)r(Cβ-Nd) (6), r(Cβ-Cβ) (42), r(Cγ-Cl) (26), φ(Nd-Cγ-Cl) (6) | 1198 |
| 3193 (ω141) | 24 | B2u | r(Hs-Cγ) (99) | 3051 |
| 3552 (ω143) | 45 | B1u | r(Hc-Np) (99) | 3286 |
| H2TPyzPACl8 | KBr [ | |||
| 1242 (ω107) | 100 | B1u | r(Cβ-Nd) (6), r(Cβ-Cβ) (42), r(Cγ-Cl) (26), φ(Nd-Cγ-Cl) (6) | 1192 |
| 1255 (ω109) | 98 | B2u | r(Cβ-Nd) (8), r(Cγ-Cγ) (46), r(Cγ-Cl) (21), φ(Nd-Cγ-Cl) (6) | 1235 |
| 1281 (ω111) | 67 | B1u | r(Cα-Cβ) (8), r(Cβ-Cβ) (19), r(Nd-Cγ) (13), r(Cγ-Cγ) (13) | |
| 1328 (ω116) | 52 | B1u | r(Np-Cα) (7), r(Nm-Cα) (11), r(Cβ-Nd) (12), r(Nd-Cγ) (45) | |
| 1340 (ω117) | 83 | B2u | r(Np-Cα) (8), r(Cα-Cβ) (10), r(Cβ-Cβ) (8), r(Cβ-Nd) (19), φ(Cα-Np-Hc) (28) | |
| 3554 (ω143) | 27 | B1u | r(Hc-Np) (99) | 3287 |
| Al(Cl)TPyzPA | ||||
| 1140 (ω92-ω93) | 53 | E | r(Np-Cα) (24), r(Nm-Cα) (14), r(Cα-Cβ) (10), r(Cβ-Nd) (12), r(Nd-Cγ) (9) | |
| 1255 (ω98-ω99) | 100 | E | r(Np-Cα) (5), r(Cα-Cβ) (15), r(Cβ-Cβ) (14), r(Nd-Cγ) (20), φ(Cβ-Nd-Cγ) (9) | |
| 1404(ω113-ω114) | 36 | E | r(Cβ-Cβ) (12), r(Cγ-Cγ) (13), φ(Nd-Cγ-Hs) (36), φ(Cγ-Cγ-Hs) (23) | |
| 3189 (ω142-ω143) | 18 | E | r(Hs-Np) (99) | |
| Al(Cl)TPyzPACl8 | KBr [ | |||
| 1246 (ω111-ω112) | 100 | E | r(Cγ-Cγ) (43), r(Cγ-Cl) (25), φ(Nd-Cγ-Cl) (6) | 1168 |
| 1293 (ω115-ω116) | 52 | E | r(Np-Cα) (8), r(Cβ-Cβ) (15), r(Nd-Cγ) (25), r(Cγ-Cγ) (13) | 1260 |
| 1331 (ω117-ω118) | 97 | E | r(Cα-Cβ) (8), r(Cβ-Nd) (23), r(Nd-Cγ) (49) | 1323 |
| Ga(Cl)TPyzPA | ||||
| 1142 (ω92-ω93) | 44 | E | r(Np-Cα) (49), r(Nm-Cα) (11), r(Cα-Cβ) (9), r(Nd-Cγ) (9) | |
| 1254 (ω98-ω99) | 100 | E | r(Np-Cα) (6), r(Cα-Cβ) (12), r(Cβ-Cβ) (11), r(Cβ-Nd) (9), r(Nd-Cγ) (18) | |
| 1401 (ω113-ω114) | 35 | E | r(Cβ-Cβ) (11), r(Cγ-Cγ) (12), φ(Nd-Cγ-Hs) (36), φ(Cγ-Cγ-Hs) (23) | |
| 3194 (ω142-ω143) | 17 | E | r(Hs-Np) (99) | |
| Ga(Cl)TPyzPACl8 | this work | |||
| 1248 (ω111-ω112) | 100 | E | r(Cγ-Cγ) (41), r(Cγ-Cl) (24), φ(Nd-Cγ-Cl) (6) | 1232 |
| 1290 (ω115-ω116) | 50 | E | r(Np-Cα) (6), r(Cα-Cβ) (7), r(Cβ-Cβ) (17), r(Nd-Cγ) (26), r(Cγ-Cγ) (13) | |
| 1328 (ω117-ω118) | 94 | E | r(Cα-Cβ) (8), r(Cβ-Nd) (22), r(Nd-Cγ) (50) | 1349 |
| In(Cl)TPyzPA | KBr [ | |||
| 1143 (ω92-ω93) | 36 | E | r(Np-Cα) (49), r(Nm-Cα) (10), r(Cα-Cβ) (6), r(Nd-Cγ) (10) | 1100 |
| 1247 (ω98-ω99) | 100 | E | r(Np-Cα) (5), r(Cα-Cβ) (15), r(Cβ-Cβ) (14), r(Nd-Cγ) (20) | 1213 |
| 1396 (ω113-ω114) | 34 | E | r(Cβ-Cβ) (10), r(Cγ-Cγ) (10), φ(Nd-Cγ-Hs) (34), φ(Cγ-Cγ-Hs) (22) | 1364 |
| 3194 (ω142-ω143) | 17 | E | r(Hs-Np) (99) | 3316 |
| In(Cl)TPyzPACl8 | this work | |||
| 1250 (ω111-ω112) | 100 | E | r(Cγ-Cγ) (44), r(Cγ-Cl) (26), φ(Nd-Cγ-Cl) (6) | 1264 |
| 1280 (ω114-ω115) | 50 | E | r(Np-Cα) (5), r(Cα-Cβ) (7), r(Cβ-Cβ) (19), r(Nd-Cγ) (26) | 1323 |
| 1325 (ω117-ω118) | 83 | E | r(Cα-Cβ) (8), r(Cβ-Nd) (23), r(Nd-Cγ) (49) | 1364 |
1 Coordinates are listed provided that their contributions (shown in parentheses) are greater than ~5%. Assignment of vibrational modes based on potential energy distribution. The following designations of the coordinates are used: r—stretching of the bond; φ—bending, a change in the angle; OPB—out-of-plane bending; θ—a change in the dihedral angle. Experimental frequencies are given for metal complexes with an axial–OH ligand.