Literature DB >> 35622342

ARResT/Interrogate Immunoprofiling Platform: Concepts, Workflows, and Insights.

Nikos Darzentas1.   

Abstract

ARResT/Interrogate was built within the EuroClonality-NGS working group to meet the challenge of developing and applying assays for the high-throughput sequence-based profiling of immunoglobulin (IG) and T-cell receptor (TR) repertoires. We herein present basic concepts, outline the main workflow, delve into EuroClonality-NGS-specific aspects, and share insights from our experiences with the platform.
© 2022. The Author(s).

Entities:  

Keywords:  Antigen receptors; Bioinformatics; IG; Immunoglobulin; Pipeline; Sequence analysis; TR

Mesh：

Substances：

Year:  2022        PMID： 35622342     DOI： 10.1007/978-1-0716-2115-8_26

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  2 in total

1.  ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data.

Authors:  Vojtech Bystry; Tomas Reigl; Adam Krejci; Martin Demko; Barbora Hanakova; Andrea Grioni; Henrik Knecht; Max Schlitt; Peter Dreger; Leopold Sellner; Dietrich Herrmann; Marine Pingeon; Myriam Boudjoghra; Jos Rijntjes; Christiane Pott; Anton W Langerak; Patricia J T A Groenen; Frederic Davi; Monika Brüggemann; Nikos Darzentas
Journal:  Bioinformatics       Date:  2017-02-01       Impact factor: 6.937

2.  ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy.

Authors:  Vojtech Bystry; Andreas Agathangelidis; Vasilis Bikos; Lesley Ann Sutton; Panagiotis Baliakas; Anastasia Hadzidimitriou; Kostas Stamatopoulos; Nikos Darzentas
Journal:  Bioinformatics       Date:  2015-08-06       Impact factor: 6.937
  2 in total

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