Literature DB >> 35618955

Best practice standards for circular RNA research.

Anne F Nielsen1,2, Albrecht Bindereif3, Irene Bozzoni4, Mor Hanan5, Thomas B Hansen6,7, Manuel Irimia8,9,10, Sebastian Kadener11, Lasse S Kristensen12, Ivano Legnini13, Mariangela Morlando14, Morten T Jarlstad Olesen12, R Jeroen Pasterkamp15, Stephan Preibisch13,16, Nikolaus Rajewsky13, Christin Suenkel13,17, Jørgen Kjems18,19,20.   

Abstract

Circular RNAs (circRNAs) are formed in all domains of life and via different mechanisms. There has been an explosion in the number of circRNA papers in recent years; however, as a relatively young field, circRNA biology has an urgent need for common experimental standards for isolating, analyzing, expressing and depleting circRNAs. Here we propose a set of guidelines for circRNA studies based on the authors' experience. This Perspective will specifically address the major class of circRNAs in Eukarya that are generated by a spliceosome-catalyzed back-splicing event. We hope that the implementation of best practice principles for circRNA research will help move the field forward and allow a better functional understanding of this fascinating group of RNAs.
© 2022. Springer Nature America, Inc.

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Year:  2022        PMID: 35618955     DOI: 10.1038/s41592-022-01487-2

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


  94 in total

1.  Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.

Authors:  H L Sanger; G Klotz; D Riesner; H J Gross; A K Kleinschmidt
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

2.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

3.  Mis-splicing yields circular RNA molecules.

Authors:  C Cocquerelle; B Mascrez; D Hétuin; B Bailleul
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

4.  Electron microscopic evidence for the circular form of RNA in the cytoplasm of eukaryotic cells.

Authors:  M T Hsu; M Coca-Prados
Journal:  Nature       Date:  1979-07-26       Impact factor: 49.962

5.  Novel splicing mechanism for the ribosomal RNA intron in the archaebacterium Desulfurococcus mobilis.

Authors:  J Kjems; R A Garrett
Journal:  Cell       Date:  1988-08-26       Impact factor: 41.582

6.  Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction.

Authors:  A J Zaug; P J Grabowski; T R Cech
Journal:  Nature       Date:  1983 Feb 17-23       Impact factor: 49.962

7.  Circular RNAs are a large class of animal RNAs with regulatory potency.

Authors:  Sebastian Memczak; Marvin Jens; Antigoni Elefsinioti; Francesca Torti; Janna Krueger; Agnieszka Rybak; Luisa Maier; Sebastian D Mackowiak; Lea H Gregersen; Mathias Munschauer; Alexander Loewer; Ulrike Ziebold; Markus Landthaler; Christine Kocks; Ferdinand le Noble; Nikolaus Rajewsky
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

8.  Natural RNA circles function as efficient microRNA sponges.

Authors:  Thomas B Hansen; Trine I Jensen; Bettina H Clausen; Jesper B Bramsen; Bente Finsen; Christian K Damgaard; Jørgen Kjems
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

9.  Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.

Authors:  Julia Salzman; Charles Gawad; Peter Lincoln Wang; Norman Lacayo; Patrick O Brown
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

10.  Circular transcripts of the testis-determining gene Sry in adult mouse testis.

Authors:  B Capel; A Swain; S Nicolis; A Hacker; M Walter; P Koopman; P Goodfellow; R Lovell-Badge
Journal:  Cell       Date:  1993-06-04       Impact factor: 41.582

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  3 in total

1.  Some roads ahead for noncoding RNAs.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2022-10       Impact factor: 47.990

Review 2.  Promising Strategies for Preserving Adult Endothelium Health and Reversing Its Dysfunction: From Liquid Biopsy to New Omics Technologies and Noninvasive Circulating Biomarkers.

Authors:  Carmela Rita Balistreri
Journal:  Int J Mol Sci       Date:  2022-07-07       Impact factor: 6.208

Review 3.  A Review and In Silico Analysis of Tissue and Exosomal Circular RNAs: Opportunities and Challenges in Thyroid Cancer.

Authors:  Eman A Toraih; Mohammad H Hussein; Manal S Fawzy; Emad Kandil
Journal:  Cancers (Basel)       Date:  2022-09-28       Impact factor: 6.575

  3 in total

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