Literature DB >> 35618895

CRISPR Library Screening in Cultured Cardiomyocytes.

Sophia DeLuca1, Nenad Bursac2.   

Abstract

CRISPR-Cas9-based screening technologies enable precise, high-throughput genetic and epigenetic manipulation to study mechanisms of development and disease and identify new therapeutic targets. Here, we describe a general protocol for the generation of custom, pooled CRISPR sgRNA libraries for screening in cardiomyocyte cultures. This methodology can address a variety of lab-specific research questions in cardiomyocytes and other cell types, as the genes to be modified can be curated or whole genomes can be investigated. The use of lentiviral sgRNA delivery followed by high-throughput sequencing allows for rapid comparison and identification of candidate genes and epigenetic modifiers, which can be further validated individually or in sub-pooled libraries following screening.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  CRISPR; Cardiomyocyte; Genetic screen; High-throughput; Knock-out; Maturation; Proliferation; Survival

Mesh:

Year:  2022        PMID: 35618895      PMCID: PMC9274507          DOI: 10.1007/978-1-0716-2261-2_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  35 in total

1.  Lentivirus production.

Authors:  Xiaoyin Wang; Michael McManus
Journal:  J Vis Exp       Date:  2009-10-02       Impact factor: 1.355

2.  Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity.

Authors:  Hui Kwon Kim; Seonwoo Min; Myungjae Song; Soobin Jung; Jae Woo Choi; Younggwang Kim; Sangeun Lee; Sungroh Yoon; Hyongbum Henry Kim
Journal:  Nat Biotechnol       Date:  2018-01-29       Impact factor: 54.908

3.  Pooled Lentiviral CRISPR-Cas9 Screens for Functional Genomics in Mammalian Cells.

Authors:  Michael Aregger; Megha Chandrashekhar; Amy Hin Yan Tong; Katherine Chan; Jason Moffat
Journal:  Methods Mol Biol       Date:  2019

4.  Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.

Authors:  Yunqing Ma; Jiayuan Zhang; Weijie Yin; Zhenchao Zhang; Yan Song; Xing Chang
Journal:  Nat Methods       Date:  2016-10-10       Impact factor: 28.547

5.  Dynamic culture yields engineered myocardium with near-adult functional output.

Authors:  Christopher P Jackman; Aaron L Carlson; Nenad Bursac
Journal:  Biomaterials       Date:  2016-09-30       Impact factor: 12.479

6.  Functional annotation of native enhancers with a Cas9-histone demethylase fusion.

Authors:  Nicola A Kearns; Hannah Pham; Barbara Tabak; Ryan M Genga; Noah J Silverstein; Manuel Garber; René Maehr
Journal:  Nat Methods       Date:  2015-03-16       Impact factor: 28.547

7.  Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.

Authors:  Isaac B Hilton; Anthony M D'Ippolito; Christopher M Vockley; Pratiksha I Thakore; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Biotechnol       Date:  2015-04-06       Impact factor: 54.908

8.  Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities.

Authors:  Kendall R Sanson; Ruth E Hanna; Mudra Hegde; Katherine F Donovan; Christine Strand; Meagan E Sullender; Emma W Vaimberg; Amy Goodale; David E Root; Federica Piccioni; John G Doench
Journal:  Nat Commun       Date:  2018-12-21       Impact factor: 14.919

9.  Optimization of AsCas12a for combinatorial genetic screens in human cells.

Authors:  Peter C DeWeirdt; Kendall R Sanson; Annabel K Sangree; Mudra Hegde; Ruth E Hanna; Marissa N Feeley; Audrey L Griffith; Teng Teng; Samantha M Borys; Christine Strand; J Keith Joung; Benjamin P Kleinstiver; Xuewen Pan; Alan Huang; John G Doench
Journal:  Nat Biotechnol       Date:  2020-07-13       Impact factor: 54.908

10.  The Gene Ontology Resource: 20 years and still GOing strong.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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