Literature DB >> 35613100

Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort-EPICOV.

Josiane Warszawski1,2, Laurence Meyer1,2, Jeanna-Eve Franck3, Delphine Rahib4, Nathalie Lydié4, Anne Gosselin5,6, Emilie Counil5, Robin Kreling1, Sophie Novelli1, Remy Slama7,8, Philippe Raynaud9, Guillaume Bagein9, Vianney Costemalle9, Patrick Sillard10, Toscane Fourie11, Xavier de Lamballerie11, Nathalie Bajos3,12.   

Abstract

BACKGROUND: We aimed to study whether social patterns of exposure to SARS-CoV-2 infection changed in France throughout the year 2020, in light to the easing of social contact restrictions.
METHODS: A population-based cohort of individuals aged 15 years or over was randomly selected from the national tax register to collect socio-economic data, migration history, and living conditions in May and November 2020. Home self-sampling on dried blood was proposed to a 10% random subsample in May and to all in November. A positive anti-SARS-CoV-2 ELISA IgG result against the virus spike protein (ELISA-S) was the primary outcome. The design, including sampling and post-stratification weights, was taken into account in univariate and multivariate analyses.
RESULTS: Of the 134,391 participants in May, 107,759 completed the second questionnaire in November, and respectively 12,114 and 63,524 were tested. The national ELISA-S seroprevalence was 4.5% [95%CI: 4.0%-5.1%] in May and 6.2% [5.9%-6.6%] in November. It increased markedly in 18-24-year-old population from 4.8% to 10.0%, and among second-generation immigrants from outside Europe from 5.9% to 14.4%. This group remained strongly associated with seropositivity in November, after controlling for any contextual or individual variables, with an adjusted OR of 2.1 [1.7-2.7], compared to the majority population. In both periods, seroprevalence remained higher in healthcare professions than in other occupations.
CONCLUSION: The risk of Covid-19 infection increased among young people and second-generation migrants between the first and second epidemic waves, in a context of less strict social restrictions, which seems to have reinforced territorialized socialization among peers.

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Year:  2022        PMID: 35613100      PMCID: PMC9132278          DOI: 10.1371/journal.pone.0267725

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.752


Introduction

Social determinants contribute to socioeconomic, ethno-racial and spatial inequalities in COVID-19 exposure and severity [1, 2]. Their role may change over time according to the stringency or duration of social contact restrictions [3] and vaccination policies. African, Asian, Latin-American and other ethnic minorities were disproportionately affected by SARS-CoV-2 in Europe and North America during the first epidemic wave [4-8]. However, in the UK, the difference in age-standardized COVID-19 mortality between people with black ethnic background and the white population decreased markedly between the first and second waves [9]. France has been severely affected by COVID-19. The first wave peaked two weeks after the first national lockdown initiated on 17th March 2020, in a context of mask shortages and little availability of PCR tests. The first lockdown, which ended on 11th May 2020, after a dramatic decrease to a very low incidence rate, was very strict, with closure of schools, universities, cultural and social venues, shops except for essential supply, teleworking, and limitation of outdoor circulation. The second wave started slowly at the end of August, despite a wide-scale distribution of masks and free access to PCR and antigenic tests. Following a period of mandatory physical-distancing and curfew with territorial variations, a second national lockdown was instated from 30 October to 15 December 2020. Unlike the first lockdown which caused widespread suspension of both social and professional life, the second was less restrictive, with no school closure and extended list of shops authorized to remain open. Between the first and second lockdown, teleworking was encouraged, measures maintaining barriers to extra-professional social life remained, especially face covering and maximum numbers admitted to access attractions, coffees and restaurant, but which let more opportunities to get together, especially during the summer. Most analysis of social and ethnic disparities are based on mortality, hospitalization, and virologic PCR data. Here, we aimed to study the social dynamics of the epidemic between the end of the first lockdown in May and the second in November 2020, using the French national EpiCoV cohort, a large random population-based seroprevalence study [10], enabling identification of changes in factors associated with seropositivity in the context of the easing of social contact restrictions.

Materials and methods

Study design

Individuals aged 15 years or older living in France were randomly selected from the FIDELI administrative sampling frame, covering 96.4% of the population, providing postal addresses for all, and e-mail addresses or telephone numbers for 83%. FIDELI is the national database on housing and individuals issued from tax files, containing demographic information on people and household structure and income, and additional contextual data about the living place of people. The sampling design is detailed elsewhere [10]. Differential sampling was used to ensure oversampling of the less densely populated départements (i.e French administrative districts), and lower-income categories. Residents in nursing homes for elderly persons were excluded, as it was not feasible to obtain help from caregivers to facilitate telephone or web contact with them during the first lockdown. All selected individuals were contacted by post, e-mail and text messages, with up to seven reminders. In the first round in May, computer-assisted-web interviews (CAWI) or computer-assisted-telephone interviews (CATI) were offered to a random 20% subsample. The remaining 80% were assigned to CAWI exclusively. All first-round respondents were eligible for the second in November 2020.

Home capillary blood self-sampling for serological testing

This was proposed during the web/telephone questionnaire to a national random subsample in May, and to all respondents in November. Dried-blood spots were collected on 903Whatman paper (DBS) kits sent to each participant agreeing to blood sampling, mailed to three biobanks (Bordeaux, Amiens, Montpellier) to be punched with a PantheraTM machine (Perkin Elmer). Eluates were processed in a virology laboratory (Unité des virus Emergents, Marseille) with commercial ELISA kits (Euroimmun®, Lübeck, Germany) to detect anti-SARS-CoV-2 antibodies (IgG) against the S1 domain of the viral spike protein (ELISA-S), according to the manufacturer’s instructions.

Outcome

SARS-Cov-2 seroprevalence was estimated as the proportion of individuals tested with an ELISA-S ratio ≥1.1, according to the threshold specified by the manufacturer.

Exposure

Contextual living conditions included administrative geographical area, population density in the municipality of residence, whether the neighbourhood was defined as socially deprived with prioritizing of socio-economic interventions, the number of people in the household, the household per capita income decile, and whether any other household member had had a positive virological PCR or Antigen test since January 2020. Individual characteristics included gender, age, personal and parental migration history, educational level, current occupation (collected with more detail in November), tobacco use, body mass index and comorbidities, number of contacts and face mask use outside home in the week before the second-round interview.

Ethics and regulatory issues

The survey was approved by CNIL (the French data protection authority) (ref: MLD/MFI/AR205138) and the ethics committee (Comité de Protection des Personnes Sud M editerranee III 2020-A01191-38) on April 2020, and by the “Comité du Label de la Statistique Publique”. The serological results were sent to the participants by post with information about interpreting individual test results.

Statistical analyses

We first repeated the same univariate and multivariate analyses on the May and November samples to estimate, for each period, the seroprevalence on national level and by geographical area, contextual variables, housing conditions, and individual characteristics, and to study changes in the strength of their associations with the presence of antibodies between these two periods. We then considered the subsample of people tested negative in May (ELISA-S ratio <0.7), to study associations with positive serology in November, as a measure of the incidence of new infections between the two periods. Finally, we performed an additional multivariate analysis on the November sample, as it was much larger and included more detailed information than in May, that we added step by step in order to study the role of socio-economic and migration status more fully. Final calibrated weights were calculated to correct for non-response, as detailed elsewhere [10], for first and second round. Response homogeneity groups were derived from the sampling weight divided by the probability of response estimated with logit models adjusted for auxiliary variables potentially linked to both the response mechanism and the main variables of interest in the EpiCov survey. The Fideli sampling frame provided a wide range of auxiliary variables, including sociodemographics, income, quality of contact information, and contextual variables at territorial level, such as population density, proportion of people below the poverty line, obtained from geo-referenced information. Variables collected in the first round were added as auxiliary variables to adjust non-response models for the second round. First-step weights estimated from the percentage of respondents in each homogeneity group were calibrated according to the margins of the population census data and population projections for age categories, gender, departement, educational level, and region, to decrease the variance and the residual bias for variables correlated with margins. The unequal probabilities sampling design, and final calibrated weights were taken into account, with the specific design-based “proc survey” procedures of SAS and “svy” procedures of STATA. Prevalences were estimated, using weighted percentages, and logit transformed confidence limits were used to remain within the interval [0,1]. The design-based Pearson chi-squared test statistic developed by Rao was used for multiway contingency tables [11]. Crude and adjusted odds ratios were estimated with logistic regression models based on design-based methods [12]. The significance threshold was 0.05.

Results

Among the 134 391 respondents to the first-round questionnaire in May 2020, 107 759 (80.2%) completed the second-round questionnaire in November 2020 (Fig 1). Serological tests were performed in mainland France on 12 114 participants for the first round (median date: May 21st 2020; IQR: 18th– 28th May), and 63 524 for the second (November 24th 2020; IQR: 18th November– 4th December).
Fig 1

Flowchart: The national EpiCov cohort, round 1 (May 2020) and round 2 (November 2020).

The national seroprevalence (ELISA-S ratio ≥1.1) increased from 4.5% [95%CI: 4.0–5.1%] in May to 6.2% [5.9–6.6%] in November, with wide disparities between départements from under 2% to 13% (Table 1; S1 Table).
Table 1

SARS-Cov-2 SEROPREVALENCE (ELISA-S ≥ 1.11) according to living condition, among people living in mainland France 2: The national EpiCov cohort, rounds 1 & 2.

ELISA ≥ 1.1 (May 2020) 3ELISA ≥ 1.1 (November 2020) 3
Totalcases%CI 95%pTotalcases%CI95%P
All121147854.5[4.0–5.1]6352439436.2[5.9–6.6]
Number of people in household
    11665742.1[1.4–3.1]<0.001103775705.2[4.5–5.9]<0.001
    242662032.7[2.2–3.4]2499413314.9[4.6–5.3]
    322681735.1[4.0–6.6]109027416.5[5.8–7.2]
    425602107.1[5.6–8.9]120408997.9[7.1–8.8]
    5 or more13491258.5[6.1–11.8]518940010.1[8.7–11.8]
≥1 suspected Covid case in household<0.001
    Living alone1665742.1[1.4–3.1]103775705.2[4.5–5.9]<0.001
    No (and not living alone)88224334.0[3.4–4.7]3735514944.1[3.8–4.5]
    Yes before June 2020162127812.9[10.6–15.6]454351412.0[10.4–13.8]
    Yes since June 2020814396613.4[12.2–14.6]
    Yes before and after June 2020308439712.6[11.1–14.3]
Population density in municipality
    Low36662193.4[2.7–4.4]<0.0012364711784.5[4.1–4.8]<0.001
    Medium35621993.3[2.5–4.2]1865010755.4[4.9–6]
    High48863676.4[5.3–7.6]2122716908.5[7.9–9.2]
Socially-deprived neighbourhood
    No115897434.2[3.7–4.8]0.0216184037785.9[5.6–6.2]<0.001
    Yes525428.2[4.7–14]168416511.2[8.9–14]
Geographical area (region)
    11- Ile de France24302149.0[7.3–11.2]<0.00110441102111.0[10;0–12.1]<0.001
    24-Centre Loire23282.4[1.2–5.0]25271074.2[3.1–5.7]
    27-Bourgogne Franche Comté28071.5[0.6–3.4]30561955.6[4.6–6.7]
    28-Normandie26671.5[0.7–3.3]27881153.1[2.5–3.8]
    32-Hauts de France1499663.7[2.2–6.1]58764186.8[5.9–7.9]
    44-Grand Est32393236.7[5.2–8.5]64615016.7[5.9–7.6]
    52-Pays de Loire328112.9[1.6–5.3]38691483.0[2.4–3.8]
    53-Bretagne307124.8[2.3–9.8]35101052.5[1.9–3.2]
    75-Nouvelle Aquitaine538132.0[1.1–3.5]58202023.4[2.8–4.1]
    76-Occitanie560192.2[1.4–3.7]63352684.5[3.7–5.5]
    84-Auvergne716364.0[2.8–5.6]82746438.4[7.4–9.4]
    93-PACA1687695.0[3.2–7.6]42782114.4[3.5–5.4]
    94-Corse3200.028994.8[1.9–11.4]

1. Home sampling by finger prick/Euroimmun ELISA-S test

2. People aged 15 years or over residing in mainland France, outside nursing homes for elderly and prisons.

3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation) and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N.

1. Home sampling by finger prick/Euroimmun ELISA-S test 2. People aged 15 years or over residing in mainland France, outside nursing homes for elderly and prisons. 3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation) and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N. In both periods, seroprevalence was significantly higher among individuals living in highly densely populated municipalities, in socially deprived neighbourhoods and in large households (Table 1). The strength of the association with household size was weaker in November than in May. Seroprevalence, which tended to be higher among women than men in May (5.0% versus 3.9%; p = 0.054), was similar between men and women in November (6.1% and 6.3%; p = 0.52) (Table 2). Seroprevalence increased with higher diploma levels, and was associated with a U-shaped curve with family per capita income, with lowest rates in the central decile especially in May. Prevalence remained nearly twice as high among healthcare professionals as among people with other occupations, whether self-reported as essential or not, respectively 11.3% and 6.4% in November. Detailed analysis of professional occupations in November showed the highest seroprevalences in hospital professions (physicians, nurses and assistant nurses), two to three times higher than for other occupations, including private physicians, pharmacists, teachers and workers in essential stores. Daily smokers were at lower risk of having antibodies than occasional, former or non-smokers.
Table 2

SARS-Cov-2 SEROPREVALENCE (ELISA-S ≥ 1.11) according to individual socio-economic factors, among people living in mainland France 2: The national EpiCov cohort, rounds 1 & 2.

ELISA ≥ 1.1 (May 2020) 3ELISA ≥ 1.1 (November 2020) 3
Totalcases%CI 95%pTotalcases%CI95%P
All121147854.5[4.0–5.1]6352439436.2[5.9–6.6]
Gender
    Men54693213.9[3.1–4.8]0.0522756416656.1[5.7–6.6]0.459
    Women66454645.0[4.3–5.9]3596022786.4[6–6.8]
Age (years)
    15–17418274.5[2.2–8.9]<0.00114381289.8[7.8–12.2]<0.001
    18–241042614.8[3–7.6]491948310.0[8.6–11.5]
    25–3415441185.0[3.7–6.7]68164907.2[6.3–8.3]
    35–4420501988.3[6.7–10.4]103456716.5[5.8–7.4]
    45–5423401764.9[3.9–6.2]125968506.5[5.9–7.2]
    55–6422341224.8[3.3–7.1]128797105.3[4.8–5.8]
    65–741727641.8[1.2–2.7]106114624.3[3.8–4.9]
    75+759190.7[0.4–1.4]39201493.7[2.9–4.7]
Migratory status 4
    No (majority population)97696124.1[3.5–4.7]<0.0015429631725.3[5.1–5.6]<0.001
    Immigrant from Europe
    First- generation345223.8[2–6.9]1577845.2[3.9–6.8]
    Second- generation668393.8[2.4–5.9]31641976.0[4.9–7.3]
    Immigrant from outside Europe
    First- generation606619.2[6.2–13.6]176020713.3[10.7–16.3]
    Second- generation581445.9[3.8–9.2]189423314.4[11.9–17.4]
Detailed Migratory status 4
No (majority population)
    Born in Mainland France96465964.03.4–4.65369731095.3[5.0–5.5]
    Born in FOD 556812.45.3–26.3301327.3[4.8–11.2]
    Parents born in FOD56783.31.2–9.2298317.5[4.7–11.6]
Immigrant from Europe
    First- generation345223.8[2–6.9]1577845.2[3.9–6.8]
    Second- generation668393.8[2.4–5.9]31641976.0[4.9–7.3]
1st generation from outside Europe
    Born in Africa356357.44.5–12.195012615.5[11.9–20.0]
    Born in Asia or elsewhere2502613.47.1–23.7810819.4[6.8–12.8]
2nd generation from outside Europe581445.9[3.8–9.2]189423314.4[11.9–17.4]
    Born in Africa385296.84.0–11.4118115615.6[12.3–19.6]
    Born in Asia or elsewhere196154.11.9–8.47137712.1[8.7–16.5]
Occupation in May 6
    Healthcare profession5787411.4[8.2–15.6]<0.001321933811.3[9.8–13]<0.001
    Other essential profession1219995.2[3.8–7.1]62593816.4[5.3–7.7]
    Non-essential profession49603655.7[4.8–6.8]2498416196.4[5.9–6.9]
    No occupation53562473.0[2.3–3.9]2904616055.7[5.3–6.2]
Educational level
    < High school diploma1908983.2[2.2–4.8]<0.00184964885.6[4.9–6.3]<0.001
High school diploma39222043.3[2.6–4.2]2038411715.7[5.2–6.3]
    Secondary first degree diploma24351846.4[5.0–8.0]135098356.9[6.3–7.6]
    ≥ Bachelor’s degree38492996.2[5.2–7.5]2113514497.3[6.8–7.9]
Family income per capita (deciles)
    D01 (lowest)798525.7[3.2–9.9]0.01636722418.2[6.7–10]<0.001
    D02-D031430864.8[3.5–6.7]64813856.2[5.3–7.3]
    D04-D051718973.3[2.4–4.5]90985235.3[4.7–6.0]
    D06-D0724231282.9[2.2–3.8]132527855.9[5.4–6.5]
    D08-D0933322375.5[4.5–6.7]1872411476.1[5.7–6.6]
    D1021121596.0[4.7–7.6]108807667.0[6.5–7.6]
Tobacco use<0.001
    Daily smoker1995692.8[2.0–4.0]0.03289492662.7[2.3–3.2]
    Occasional smoker470335.1[3.1–8.2]29411967.8[6.2–9.7]
    Ex smoker since epidemic879485.4[3.3–8.6]
    Ex-smoker before epidemic38882534.5[3.5–5.8]158959405.7[5.2–6.3]
    Non-smoker57564305.1[4.3–6.0]3481924927.5[7.1–8]

1. Home sampling by finger prick/Euroimmun ELISA-S test

2. People aged 15 years or over residing in mainland France, outside nursing homes for elderly and prisons.

3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation) and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N.

4. Migratory status: Majority population = persons born in France who are neither first nor second-generation immigrants / First-generation immigrants: born non-French outside France and living permanently in France (including those who subsequently acquired French nationality) / Second-generation immigrants: born and living in France, with at least one parent a first-generation immigrant

5. FOD: French overseas départements

6. Self-reported in round 1: a) Healthcare professions Include medical and paramedical professionals, firefighters, pharmacists and ambulance drivers (but not including hospital cleaners, for example),.; b) Other essential professions included: Home helps or housekeepers, food shop workers, delivery drivers, public transportation drivers, cab drivers, bank customer services or reception staff, petrol station employees, police officers, postal workers, cleaning staff, security guards, construction workers, truck drivers, farmers and social workers), also self-reported.

1. Home sampling by finger prick/Euroimmun ELISA-S test 2. People aged 15 years or over residing in mainland France, outside nursing homes for elderly and prisons. 3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation) and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N. 4. Migratory status: Majority population = persons born in France who are neither first nor second-generation immigrants / First-generation immigrants: born non-French outside France and living permanently in France (including those who subsequently acquired French nationality) / Second-generation immigrants: born and living in France, with at least one parent a first-generation immigrant 5. FOD: French overseas départements 6. Self-reported in round 1: a) Healthcare professions Include medical and paramedical professionals, firefighters, pharmacists and ambulance drivers (but not including hospital cleaners, for example),.; b) Other essential professions included: Home helps or housekeepers, food shop workers, delivery drivers, public transportation drivers, cab drivers, bank customer services or reception staff, petrol station employees, police officers, postal workers, cleaning staff, security guards, construction workers, truck drivers, farmers and social workers), also self-reported. The major changes in seroprevalence between May and November 2020 concerned age and migration status. In May 2020, the highest prevalence was observed among middle-aged people (8.3% in 35–44 years old) while in November 2020, it concerned the youngest (9.6% and 9.9% respectively in the 15–17 and 18–24 age groups). In May 2020, prevalence was significantly higher among immigrants born outside Europe (9.2% compared to 5.9% among second-generation immigrants from outside Europe, and 4.1% in the French-born population), but the increased risk disappeared after adjustment for living conditions (Table 3). In contrast, in November 2020, seroprevalence was higher in both first (13.3%) and second (14.4%) generation immigrants from outside Europe, compared to 5.3% among French-born and 6.0% among European immigrants, and they remained at higher risk even after adjustment for living conditions (adjusted odds ratio respectively: 2.1 [1.7–2.8] and 2.2 [1.8–2.9]).
Table 3

Univariate and multivariate logistic regressions: Factors associated with ELISA-S seropositivity1 among people living in mainland France at the end of first and second lockdown 2: The national EpiCov cohort, rounds 1 & 2.

ELISA ≥ 1.1 (May 2020)ELISA ≥ 1.1 (November 2020)
ORcrude95% CI3ORadj95% CI3ORcrude95% CI3ORadj95% CI3
Individual characteristics
GenderP = 0.053P = 0.085P = 0.45P = 0.88
    Menrefrefrefref
    Women1.3[1.0–1.7]1.3[1.0–1.7]1.0[0 .9–1.2]1.0[0.9–1.1]
Age (years)P<0.001P = 0.003P<0.001P<0.001
    15–176.3[2.3–17.1]3.2[1.0–10.3]2.8[2.0–4.1]2.0[1.4–3.0]
    18–246.9[3.0–15.6]2.9[1.2–6.0]2.9[2.2–3.9]2.2[1.6–3.0]
    25–347.2[3.4–14.9]2.5[1.5–8.2]2.0[1.5–2.7]1.6[1.1–2.3]
    35–4412.3[6.1–25.0]5.4[2.4–12.5]1.8[1.4–2.4]1.3[0.9–1.8]
    45–547.0[3.4–14.2]3.6[1.6–8.4]1.8[1.4–2.4]1.5[1.1–2.1]
    55–646.9[3.1–15.1]4.8[2.0–11.6]1.5[1.1–1.9]1.4[1.0–1.9]
    65–742.5[1.1–5.5]2.3[1.0–5.2]1.2[0.9–1.5]1.2[0.9–1.6]
    75+refrefrefref
Migration status 4P = 0.002P = 0.705P<0.001P<0.001
    No (majority population)refrefrefref
    First- generation from Europe0.9[0.5–1.8]1.1[0.6–2.3]1.0[0.7–1.3]1.1[0.8–1.4]
    Second- generation Europe0.9[0.6–1.5]1.0[0.6–1.7]1.1[0.9–1.4]1.2[1.0–1.5]
    First-generation outside Europe2.4[1.5–3.9]1.6[0.8–3.0]2.7[2.1–3.5]2.0[1.5–2.5]
    Second- generation outside Europe1.5[0.9–2.5]1.1[0.6–1.9]3.0[2.4–3.8]2.1[1.7–2.7]
Occupational status 5P<0.001P = 0.002P<0.001P = 0.001
    Healthcare profession2.1[1.4–3.2]2.1[1.4–3.2]1.9[1.6–2.2]1.9[1.6–2.3]
    Other essential profession0.9[0.6–1.3]1.0[0.7–1.5]1.0[0.8–1.2]0.9[0.8–1.1]
    Non-essential professionrefrefrefref
    No occupation0.5[0.4–0.7]0.8[0.6–1.2]0.9[0.8–1.0]1.0[0.9–1.1]
Educational levelP<0.001P = 0.072P<0.001P = 0.31
    < High school diplomarefrefrefref
    High school diploma1.0[0.6–1.7]1.0[0.6–1.6]1.0[0.9–1.2]1.1[0.9–1.3]
    Secondary first degree diploma2.0[1.3–3.3]1.5[0.9–2.5]1.3[1.1–1.5]1.2[1.0–1.5]
    ≥ Bachelor’s degree2.0[1.3–3.1]1.2[0.7–1.9]1.3[1.1–1.6]1.1[0.9–1.4]
Family income per capita (deciles)P<0.001P = 0.004P<0.001P = 0.009
    D01 (lowest)2.0[1.0–3.9]1.5[0.8–2.9]1.4[1.1–1.8]1.1[0.8–1.3]
    D02-D031.7[1.1–2.6]1.7[1.0–2.6]1.1[0.9–1.3]0.9[0.7–1.1]
    D04-D051.1[0.7–1.7]1.1[0.7–1.7]0.9[0.8–1.0]0.8[0.7–1.0]
    D06-D07refrefrefref
    D08-D091.9[1.4–2.7]1.9[1.3–2.7]1.0[0.9–1.2]1.0[0.9–1.2]
    D102.1[1.5–3.1]1.9[1.3–2.9]1.2[1.1–1.4]1.2[1.0–1.3]
Tobacco useP = 0.035P = 0.025P<0.001P<0.001
    Daily smokerrefrefrefref
    Occasional smoker1.8[1.0–3.5]2.0[1.0–4.0]3.1[2.3–4.2]2.4[1.7–3.3]
    Ex smoker since epidemic2.1[1.2–3.5]1.9[1.1–3.2]
    Ex-smoker before epidemic1.6[1.0–2.6]1.8[1.2–2.9]2.2[1.8–2.7]2.4[2.0–3.0]
    Non-smoker1.8[1.2–2.8]1.9[1.2–2.8]3.0[2.5–3.6]2.8[2.3–3.5]
Living conditions
Population density in municipalityP<0.001P <0.001P<0.001P<0.001
    Lowrefrefrefref
    Medium1.0[0.7–1.4]1.1[0.8–1.6]1.2[1.1–1.4]1.1[1.0–1.3]
    High1.9[1.4–2.7]1.8[1.3–2.5]2.0[1.8–2.2]1.6[1.4–1.8]
Socially deprived neighbourhoodP = 0.024P = 0.35<0.001P = 0.009
    Norefrefrefref
    Yes2.0[1.1–3.7]1.4[0.7–2.6]2.0[1.5–2.6]1.4[1.1–1.9]
Number of people in householdP<0.001P = 0.003P<0.001P<0.001
    1refrefrefref
    21.3[0.8–2.1]1.4[0.9–2.3]1.0[0.8–1.1]1.0[0.8–1.2]
    32.5[1.6–4.1]2.0[1.2–3.6]1.3[1.1–1.5]1.1[1.0–1.4]
    43.6[2.2–5.8]2.5[1.4–4.4]1.6[1.3–1.9]1.4[1.1–1.6]
    5 or more4.4[2.5–7.6]3.4[1.7–6.6]2.1[1.7–2.6]1.4[1.1–1.7]

1. Home sampling by finger prick/Euroimmun ELISA-S test

2. People aged 15 years or over residing in mainland France, outside nursing homes and prisons.

3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation), crude and adjusted odds ratios, confidence intervals and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N.

4. Migratory status: Majority population = persons born in France who are neither first nor second-generation immigrants / First-generation immigrants: born non-French outside France and living permanently in France (including those who subsequently acquired French nationality) / Second-generation immigrants: born and living in France, with at least one parent being a first-generation immigrant

5. Self-Reported in round 1: a) Healthcare professions Included medical and paramedical professionals, firefighters, pharmacists and ambulance drivers (but not including hospital cleaners, for example); b) Other essential professions included: home helps or housekeepers, food shop workers, delivery drivers, public transportation drivers, cab drivers, bank customer service or reception staff, petrol station employees, police officers, postal workers, cleaning staff, security guards, construction workers, truck drivers, farmers and social workers), also self-reported.

1. Home sampling by finger prick/Euroimmun ELISA-S test 2. People aged 15 years or over residing in mainland France, outside nursing homes and prisons. 3. The sampling design is taken into account for the estimation of prevalence, confidence intervals (logit transformation), crude and adjusted odds ratios, confidence intervals and statistical tests, with the SAS procsurvey procedure. The percentages are weighted by sampling weight (the inverse of inclusion probability), corrected for non-response weigts and calibrated on the margin of the census. The prevalences are not equal to n/N. 4. Migratory status: Majority population = persons born in France who are neither first nor second-generation immigrants / First-generation immigrants: born non-French outside France and living permanently in France (including those who subsequently acquired French nationality) / Second-generation immigrants: born and living in France, with at least one parent being a first-generation immigrant 5. Self-Reported in round 1: a) Healthcare professions Included medical and paramedical professionals, firefighters, pharmacists and ambulance drivers (but not including hospital cleaners, for example); b) Other essential professions included: home helps or housekeepers, food shop workers, delivery drivers, public transportation drivers, cab drivers, bank customer service or reception staff, petrol station employees, police officers, postal workers, cleaning staff, security guards, construction workers, truck drivers, farmers and social workers), also self-reported. In order to understand the overexposure of non-European immigrants and their descendants in November 2020, detailed analyses were performed (S2 Table), taking into account behaviours related to social distancing strategies self-reported over the week before the interview (number of prolonged contacts, mask use in the street, family or festive outings) and BMI. Associations with migration status remained unchanged. The analysis was also restricted to highly densely populated areas, and the overexposure of the second generation immigrants from outside Europe remained. Results from the analysis of incidence of new infections between May and November was consistent with changes in seroprevalence (S3 Table). Overall, 3.8% [3.1–4.7%] of 7 515 people with no IgG antibodies in May were positive in November. The proportion of new infections was the highest in the 18–24 age group, among second-generation immigrants from outside Europe, among people living in socially deprived neighbourhoods, and among health-care professionals. Neither household size, diploma nor family income were associated with new infections between May and November.

Discussion

Seroprevalence in France increased slowly from the end of the first lockdown to the second, from 4.5% [95%CI: 4.0–5.1%] in May 2020 to 6.2% [5.9–6.6%] in November 2020. Seroprevalence estimated in November probably underestimates the cumulate incidence from the start of the epidemic, as the level of antibodies wanes with time [13-15]. However only 8.3% [7.3–9.4] of participants tested twice were positive at least once, and the highest prevalence rates were under 20% even in the most affected regions. At the end of 2020, the level of herd immunity in the general population in France remained low. Wide geographical disparities, with continental eastern and central areas the most affected, and western oceanic areas the least, could partly reflect the residual impact of the first strict national lockdown which stopped the spread of the virus from the north-east [16]. Between May and November 2020 seroprevalence increased much more among young people, while the middle-aged population was mainly affected during the first wave. This change is likely to be explained by more infections during the summer holidays and autumn, consistent with the higher positivity rate on PCR and antigenic tests reported to French Si-Dep surveillance systems between June and November 2020, ranging from 4.7% among 20-29-year-olds to 3.1% among 40-59-year-olds and 1.7% among 70-79-year-olds. The second major change was the increased seroprevalence among descendants of non-European immigrants (second-generation immigrants), independently of their younger age. In May 2020, seroprevalence was twice as high among first-generation immigrants from outside Europe as in the majority population, i.e. neither immigrants nor their descendants, and this was mainly explained by residence in a densely-populated area and a large household. In November 2020, prevalence was three times higher among both non-European immigrants and their descendants, reflecting a strong increase in new infections in the second generation between May and November. Adjustment for age accounted for only part of this increase. Mostly, the association remained independent of socio-economic and living conditions, geographical area, mask use and number of prolonged contacts. Nor was this explained by differences in tobacco use, comorbidities or BMI. Similar results were observed when the analysis was restricted to highly-densely populated municipalities, and urban areas where most immigrants reside, or to areas the most affected by Covid-19. African Americans, Hispanics, and other ethnic minority groups were disproportionately affected by SARS-CoV-2, as mostly documented during the first epidemic wave in terms of diagnosed infection, hospitalization [6-8] and mortality [7, 8]. Among potential reasons for higher incidence or severity related to ethnicity, biological susceptibilities have been hypothesized [17-19] but without evidence [20]. Inequalities in mortality could be primarily driven by differences in exposure to infection [21]. In England, there was a marked reduction in the difference in age-standardized COVID-19 mortality between people from black ethnic backgrounds and people from the white group between first and second wave [9]. Some minority ethnic populations have excess risks of testing positive for SARS-CoV-2 and of adverse COVID-19 outcomes compared with the white population, even after taking account of differences in socio-demographic, clinical, and household characteristics [22]. Our study, based on repeated general population seroprevalence measures, showed that while the overexposure to Covid-19 infection of first-generation immigrants was strongly linked to their living conditions at the beginning of the epidemic, the overexposure observed six months later for the first and especially the second generation, who have more social contacts more than their elders, is not the result of a lesser respect for barrier gestures or of more frequent outings than the native-born (S1 Table). It could result from micro-social structural effects, because of the phenomena of socio-spatial segregation [23] and territorialized socialization [24]. Second-generation immigrants are very often grouped together, facilitating the circulation of the virus in social groups where the prevalence is higher. Relationships between seropositivity and population density in the residence area, family income and diploma tended to be weaker in November than in May. This could suggest a protective role of the widespread use of masks in working and public areas, and testing strategies before visiting family. In a national survey in the UK, having patient-facing role and working outside home was an important risk factor in the first but not the second wave [25]. However, despite wide availability of surgical masks after severe shortage during the first epidemic wave, seroprevalence among healthcare professionals remained twice as high as among individuals with other occupations in November, similar to May, with the highest rates among hospital physicians, nurses and assistant nurses. The seroprevalence was similar in May and November while the proportion of new infections was much higher than in other occupations, which could suggest that health-care professionals were infected early during the first wave, with possibly higher proportions of seroreversion in that population because IgG levels decrease with time. This increased risk was not explained by socio-demographic or living conditions, except for medical students where the association was partly explained by their younger age. The 11% seroprevalence found in May is in line with the 8.5% found in Europe during the first wave in a meta-analysis [26], with few studies on the risk of nosocomial transmission among health-care worker [27].

Strengths

The EpiCov cohort is one of the largest socio-epidemiological random population-based cohorts providing Covid-19 seroprevalence estimate among individuals aged 15 years and over. Most seroprevalence surveys were conducted during the first epidemic wave [28-30]. The two other national serological studies based on random general population samples was conducted in Spain [31] and England [21] and reported prevalence of same magnitude than in France. EpiCov identified the population most affected by the spread of the virus in the population since initial spread, providing a basis for evaluating subsequent changes in light with epidemiological context and access to preventive strategies. People living below the poverty line were intentionally over-represented in the sampling, and detailed socio-economic and migration data was obtained. We were therefore able to perform a powerful analysis focusing on social inequalities. The home self-sampling with DBS detection of SARS CoV-2 antibodies was ideally suited to the context of the first lockdown to limit self-selection bias. The estimates provided here were weighted for non-response. Many auxiliary demographic and socio-economic variables were available from the sampling framework, which made it possible to correct a large part of the non-response bias.

Limitations

The EpiCov study had several limitations. It does not cover elderly people living in nursing homes. The Euroimmun ELISA-S test has a sensitivity of 94.4%, according to the manufacturer’s cutoff. It has been evaluated in various studies, which reported specificity ranging from 96.2% to 100% and sensitivity ranging from 86.4% to 100% [32, 33]. Anti-Sars-Cov2 IgG antibody levels have been reported to decline more or less rapidly, particularly among the elderly and subjects with mild or asymptomatic forms [13-15]. However, such decline seems not to be a source of bias to study changes is population exposed to covid between the two epidemic waves: our results were similar when analysing factors associated with new Covid infections between May and November in the subsample tested in both rounds, and changes in factors associated with seroprevalence between these two periods.

Conclusion

The role of living conditions on the risk of SARS-CoV-2 infection decreased between the first and second epidemic waves, possibly partly due to the widespread availability of masks and virological tests at population level. Nevertheless, in November 2020, in a context of less restricted social contacts than during the first lockdown, seroprevalence remained higher among healthcare professionals than among other professionals, and strongly increased among young people and racial minorities. These populations need special attention, especially for adherence to vaccination policies.

Seroprevalence (ELISA-S > 1.11) according to départment in November 2020 among people living in mainland France.

The national EpiCov cohort, 2020 November round. (DOCX) Click here for additional data file.

Factors associated with seropositivity (ELISA-S > 1.1) in November 2020 among people living in mainland France.

The national EpiCov cohort, 2020 November round–Univariate and multivariate analysis including detailed occupation, detailed living conditions and self-reported distancing behaviours over the last 7 days. (DOCX) Click here for additional data file.

Proportion of new infections between May and November 2020: Proportion of positive serologies in November among people seronegative in May—The national EpiCov cohort.

(DOCX) Click here for additional data file. 22 Dec 2021
PONE-D-21-33692
Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort – EPICOV Evidence from the national socio-epidemiological cohort – EPICOV
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Nationwide Results of COVID-19 Contact Tracing in South Korea: Individual Participant Data From an Epidemiological Survey. JMIR Med Inform. 2020 Aug 25;8(8):e20992. doi: 10.2196/20992. PMID: 32784189; PMCID: PMC7470235. 2. Title Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socioepidemiological cohort – EPICOV Evidence from the national socio-epidemiological cohort – EPICOV -> Trends in social exposure to SARS-Cov-2: Results from the French Nationwide Cohort [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socioepidemiological cohort – EPICOV Evidence from the national socio-epidemiological cohort – EPICOV Title is adequate. The abstract is well described and objective. Keywords: I suggest to the authors to exclude some keywords as “random sample” and include keywords that remind the country the study was conducted. Introduction: Very adequate. “African, Asian and other ethnic minorities were disproportionately affected by SARS-CoV-2 in Europe and North America during the first epidemic wave.” Please include “Latin-American individuals”. “France has been severely affected by COVID-19. The first wave peaked two weeks after the first lockdown initiated on 17th March” Please describe here the year. Also please describe in the text if it was a national lockdown or regional lockdown. “The second wave started slowly at the end of August,” Same observation as described above regarding the year. “but leaving more opportunities to get together from the summer.” Please clarify this statement . Aim of the study is adequate and well-described. Methods: Please describe what is “FIDELI administrative sampling framework” ? “Residents in nursing homes for elderly persons were excluded.” Please describe why. Study design is very adequate. In the Exposure section were evaluated medical conditions of the participants? It is not clear for me. Results section is well-described. Tables are adequate too. I would suggest to exclude table 4 and describe its information in the text, due to a lot of tables in the study. Discussion: The discussion section is well argued. I miss other data in the literature on serological surveys in France and in countries that have adopted the lockdown, such as England and Spain. Strenghts and limitations are adequately described. Conclusion is adequate. Reviewer #2: Thanks to extensive and well conducted epidemiological study in France, this work has revealed an increased risk of SARS-CoV-2 transmission in young people and second-generation migrants when restrictions were less stringent between the first two pandemic waves. However, the statistic analysis has not been well detailed in the manuscript. The authors talk about univariate and multivariate analyses, but a much more extensive explanation should be provided. Which statistical tests have been applied, how, and why? Do the data fulfill all requirements to apply these tests? What about the statistical potency? I guess it is high due to the very high sample number. Please, show all details. Please, present the data in an APA format or similar, associating the statistica value to the p-values that appear in tables. I guess the t-test has been applied because the confidence intervals are given, but statistical analysis is of utmost importance here and should be explained very rigorously. I guess that it has been properly performed, but an idea only exist as far as it is written, as Jacques Monod highlighted. The a priori chosen level of statistical significance should be indicated. The same is applicable to correlation and logistic regression analysis and inference. As the authors point out in the "Limitations" section, circulating antibody titles may vary and decay over time, and even they disappear in certain cases. However, memory B cell analysis is not feasible in this context. In lines 385 through 387, the authors highlight consistency between factors associated to incidence and prevalence. However, this does not solve the limitation, and this should be also pointed out. In this sentence, "of new infections" should be removed, because this is included in the "incidence" concept. Please, remove an extra space after period in line 391. There are also some extra spaces to remove in the supplementary file. Please, carefully review this. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Vicente Sperb Antonello Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". 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Please note that Supporting Information files do not need this step. 25 Mar 2022 Editor comments Q2 and 3 Financial disclosure : Role of the funders: Response: The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript Place in the manuscript: Response: the contains is strictly similar to those provided in the online Funding Statement and we removed it from the manuscript, and we will add the above sentence about the role of the funders Added in the cover letter This research was supported by research grants from Inserm (Institut National de la Santé et de la Recherche Médicale) and the French Ministry for Research, by Drees-Direction de la Recherche, des Etudes, de l’Evaluation et des Statistiques, and the French Ministry for Health, and by the Région Ile de France. Dr. Bajos has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. [856478]) This project has also received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 101016167, ORCHESTRA (Connecting European Cohorts to Increase Common and Effective Response to SARS-CoV-2 Pandemic). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Q4 Title : Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical. Response: keep title in the manuscript Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort – EPICOV Q5 Group epicov : One of the noted authors is a group or consortium Epicov Team. In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address Response: Done Q6 “data not shown” in the manuscript : Response: Such data are not necessary for the current paper and they are developed in a submitted paper currently in revision elsewhere. We then suppressed the sentence which referred to it as it is not necessary. Our discussion and conclusion are entirely supported by data included in the paper (line 336 to 341). We suppressed the unnecessary sentence in the discussion “Populations of non-European first and second-generation immigrants were as compliant with barrier measures as others in March and November (data not shown)”. Q7 and 8 Please upload a new copy of Figure 2 as the detail is not clear. We note that Figure 2 in your submission contain [map/satellite] images which may be copyrighted. �  Response: It was too difficult to obtain total copyright. This figure is not needed as the Table 1 and the supplementary table (as referred) bring geographical seroprevalence. �  We suppressed the figure 2 Additional Editor Comments: Minor comments 1. please disucss the paper below. Lee SW, Yuh WT, Yang JM, Cho YS, Yoo IK, Koh HY, Marshall D, Oh D, Ha EK, Han MY, Yon DK. Nationwide Results of COVID-19 Contact Tracing in South Korea: Individual Participant Data From an Epidemiological Survey. JMIR Med Inform. 2020 Aug 25;8(8):e20992. doi: 10.2196/20992. PMID: 32784189; PMCID: PMC7470235. Response : please, can you explain what is expected as discussion? 2.Title Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socioepidemiological cohort – EPICOV Evidence from the national socio-epidemiological cohort – EPICOV-> Trends in social exposure to SARS-Cov-2: Results from the French Nationwide Cohort Response: we retain “Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort – EPICOV” Reviewer #1 I thank the reviewer for the comments and enclose here our responses to proposals or questions. Com1 : Keywords: I suggest to the authors to exclude some keywords as “random sample” and include keywords that remind the country the study was conducted. Response: We think that the specificity of such design is very important to mention in keywords and propose to replace random sample by “probability sample design”. The country is mentioned in the title. Keyword : random sample replaced by “probability sampling design” Com2 : “African, Asian and other ethnic minorities were disproportionately affected by SARS-CoV-2 in Europe and North America during the first epidemic wave.” Please include “Latin-American individuals” Response: Done Added L62: African, Asian, Latin-American and other ethnic minorities were disproportionately affected by SARS-CoV-2 in Europe and North America during the first epidemic wave Com3 : “France has been severely affected by COVID-19. The first wave peaked two weeks after the first lockdown initiated on 17th March” Please describe here the year. Also please describe in the text if it was a national lockdown or regional lockdown. The second wave started slowly at the end of August,” Same observation as described above regarding the year. Response: Done The first national lockdown initiated on 17th March 2020 (line 68) A second national lockdown was instated from 30 October to 15 December 2020 (line 76) Com6 : “ but leaving more opportunities to get together from the summer.” Please clarify this statement Response: I agree that it is not very clear. the paragraph was clarified Change line 77-82 : Unlike the first lockdown which caused widespread suspension of both social and professional life, the second was less restrictive, with no school closure and extended list of shops authorized to remain open. Between the first and second lockdown, teleworking was encouraged, measures maintaining barriers to extra-professional social life remained, especially face covering and maximum numbers admitted to access attractions, coffees and restaurant, but which let more opportunities to get together, especially during the summer. Com7 : Please describe what is “FIDELI administrative sampling framework” ? Response: done 102 to 105 : FIDELI is the national database on housing and individuals issued from tax files, containing demographic information on people and household structure and income, and additional contextual data about the living place of people. Com7 : “Residents in nursing homes for elderly persons were excluded.” Please describe why. Response: done �  Added in lines 107 to 108 : Residents in nursing homes for elderly persons were excluded, as it was not feasible to obtain help from caregivers to facilitate telephone or web contact with them during the first lockdown. Com9: In the Exposure section were evaluated medical conditions of the participants? It is not clear for me. Response: Self reported symptoms and comorbidities were collected in the questionnaire. For this analysis, we did not include data on symptoms. Adjustment for some comorbidities to study the relation of seropositivity with migration status was performed and presented in supplemental material. We added in line 136 : Individual characteristics included …, body max index and comorbidities….. Com9: Results section is well-described. Tables are adequate too. I would suggest to exclude table 4 and describe its information in the text, due to a lot of tables in the study. Response: done �  The Table 4 was removed and added to supplemental data S3 Com11: Discussion: The discussion section is well argued. I miss other data in the literature on serological surveys in France and in countries that have adopted the lockdown, such as England and Spain. Response: done Added in line 424 et 425 (with two added references) : The two other national serological studies based on random general population samples was conducted in Spain (ref Pollan) and England (ref Ward) and reported prevalence of same magnitude than in France. Reviewer #2 I thank the reviewer for the comments and enclose here our responses to proposals or questions. Com1 : The authors talk about univariate and multivariate analyses, but a much more extensive explanation should be provided. Which statistical tests have been applied, how, and why? Do the data fulfill all requirements to apply these tests? What about the statistical potency? I guess it is high due to the very high sample number. Please, show all details. Please, present the data in an APA format or similar, associating the statistical value to the p-values that appear in tables. I guess the t-test has been applied because the confidence intervals are given, but statistical analysis is of utmost importance here and should be explained very rigorously. I guess that it has been properly performed, but an idea only exist as far as it is written, as Jacques Monod highlighted. The a priori chosen level of statistical significance should be indicated. The same is applicable to correlation and logistic regression analysis and inference. Response: I agree with the importance to add more details on the statistical methods used in this paper (that I reduce because of the limits of words). The methodology is adapted to complex sample design, as standard procedures based upon classical SRS (simple random sample) and IID (Independent and identically distributed random variables) are generally not appropriate in such design. There is a large amount of methodological literature and I added two major classical references on the principle of the méthods in that domain, with large discussion on design-based or model-based approach: �  Skinner CJ, Holt D, Smith TMF. Analysis of complex surveys [Internet]. John Wiley & Sons; 1989 [cited 2022 Feb 12]. 328 p. Available from: https://eprints.soton.ac.uk/34690/ �  Rao JN, Scott AJ. On chi-squared tests for multiway contingency tables with cell proportions estimated from survey data. Ann Stat. 1984;46–60. We used here the design-based statistical methods, classically used in many population-based study, using procedure developed and validated in Stata (svy procedures), SAS (proc survey), or R (package survey) I am not used to add the value of the statistics value with the p-value, and which is rarely presented in epidemiologic papers. Statistical value is not interpretable here as it does not correspond to classical tests. Moreover tests and confidence intervals cannot be calculated from frequency presented in the tables as weighting is applied for point estimate, and design is taken into account for variance estimation. I rewrited the methodological paragraph with reference to the two papers, and hope it will be sufficient. Paragraph rewritten (line 171-177): The unequal probabilities sampling design, and final calibrated weights were taken into account, with the specific design-based “proc survey” procedures of SAS and “svy” procedures of STATA. Prevalences were estimated, using weighted percentages, and logit transformed confidence limits were used to remain within the interval [0,1]. The design-based Pearson chi-squared test statistic developed by Rao was used for multiway contingency tables (12). Crude and adjusted odds ratios were estimated with logistic regression models based on design-based methods (11). The significance threshold was 0.05. Com2 : What about the statistical potency? I guess it is high due to the very high sample number. Response: Sample size was initially calculated so as to ensure sufficient precision for the seroprevalence estimate, the goal being to obtain a 95% confidence interval of 2 points for a prevalence of 5% in administrative subdivisions of 600,000 inhabitants (department or metropolitan area). Moreover individuals living in a household below the poverty line were overrepresented to have sufficient powerful to study relation of exposure with social disadvantage (as indicated in line 107-108) Com3 : As the authors point out in the "Limitations" section, circulating antibody titles may vary and decay over time, and even they disappear in certain cases. However, memory B cell analysis is not feasible in this context. In lines 385 through 387, the authors highlight consistency between factors associated to incidence and prevalence. However, this does not solve the limitation, and this should be also pointed out. In this sentence, "of new infections" should be removed, because this is included in the "incidence" concept. Response: We agree that the decline of antibodies should be a limitation to study trends in prevalence. However, our objective was to study whether there were changes in population exposed to Covid between first and second epidemic waves. As our conclusions are very similar when analyzing new infection between May and November and when comparing factors associated with prevalences at each period, we can conclude than decline in antibodies was not a source of bias for our main results. Paragraph changed in 412-16 : However, such decline seems not to be a source of bias to study changes is population exposed to covid between the two epidemic waves: our results were similar when analysing factors associated with new Covid infections between May and November in the subsample tested in both rounds, and changes in factors associated with seroprevalence between these two periods. Submitted filename: 0-Rebutal_letter_24March2022_plosone.docx Click here for additional data file. 14 Apr 2022 Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort – EPICOV PONE-D-21-33692R1 Dear Dr. Warszawski, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Dong Keon Yon, MD, FACAAI Academic Editor PLOS ONE Additional Editor Comments (optional): This is an excellent paper. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I have carefully read the review carried out by the authors. All my questions were answered properly and adjustments were made. Therefore, I recommend this article for publication in Plos One. Reviewer #2: In my opinion, the manuscript is now ready for publication because all isues raised have been adequately addressed and the manuscript improved accordingly. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Vicente Sperb Antonello Reviewer #2: No 28 Apr 2022 PONE-D-21-33692R1 Trends in social exposure to SARS-Cov-2 in France. Evidence from the national socio-epidemiological cohort – EPICOV Dear Dr. Warszawski: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Dong Keon Yon Academic Editor PLOS ONE
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1.  Evolution of antibodies against SARS-CoV-2 over seven months: Experience of the nationwide seroprevalence ENE-COVID study in Spain.

Authors:  Mayte Pérez-Olmeda; José María Saugar; Aurora Fernández-García; Beatriz Pérez-Gómez; Marina Pollán; Ana Avellón; Roberto Pastor-Barriuso; Nerea Fernández-de Larrea; Mariano Martín; Israel Cruz; Jose L Sanmartín; Giovanni Fedele; Jose León Paniagua; Juan F Muñoz-Montalvo; Faustino Blanco; Raquel Yotti; Jesús Oteo-Iglesias
Journal:  J Clin Virol       Date:  2022-03-11       Impact factor: 14.481

2.  African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures.

Authors:  Urminder Singh; Kyle M Hernandez; Bruce J Aronow; Eve Syrkin Wurtele
Journal:  Sci Rep       Date:  2021-05-10       Impact factor: 4.379

3.  Clinical outcomes and risk factors for COVID-19 among migrant populations in high-income countries: A systematic review.

Authors:  Sally E Hayward; Anna Deal; Cherie Cheng; Alison Crawshaw; Miriam Orcutt; Tushna F Vandrevala; Marie Norredam; Manuel Carballo; Yusuf Ciftci; Ana Requena-Méndez; Christina Greenaway; Jessica Carter; Felicity Knights; Anushka Mehrotra; Farah Seedat; Kayvan Bozorgmehr; Apostolos Veizis; Ines Campos-Matos; Fatima Wurie; Martin McKee; Bernadette Kumar; Sally Hargreaves
Journal:  J Migr Health       Date:  2021-04-22

4.  Community prevalence of SARS-CoV-2 in England from April to November, 2020: results from the ONS Coronavirus Infection Survey.

Authors:  Koen B Pouwels; Thomas House; Emma Pritchard; Julie V Robotham; Paul J Birrell; Andrew Gelman; Karina-Doris Vihta; Nikola Bowers; Ian Boreham; Heledd Thomas; James Lewis; Iain Bell; John I Bell; John N Newton; Jeremy Farrar; Ian Diamond; Pete Benton; Ann Sarah Walker
Journal:  Lancet Public Health       Date:  2020-12-10

5.  Ethnic differences in SARS-CoV-2 infection and COVID-19-related hospitalisation, intensive care unit admission, and death in 17 million adults in England: an observational cohort study using the OpenSAFELY platform.

Authors:  Rohini Mathur; Christopher T Rentsch; Caroline E Morton; William J Hulme; Anna Schultze; Brian MacKenna; Rosalind M Eggo; Krishnan Bhaskaran; Angel Y S Wong; Elizabeth J Williamson; Harriet Forbes; Kevin Wing; Helen I McDonald; Chris Bates; Seb Bacon; Alex J Walker; David Evans; Peter Inglesby; Amir Mehrkar; Helen J Curtis; Nicholas J DeVito; Richard Croker; Henry Drysdale; Jonathan Cockburn; John Parry; Frank Hester; Sam Harper; Ian J Douglas; Laurie Tomlinson; Stephen J W Evans; Richard Grieve; David Harrison; Kathy Rowan; Kamlesh Khunti; Nishi Chaturvedi; Liam Smeeth; Ben Goldacre
Journal:  Lancet       Date:  2021-04-30       Impact factor: 202.731

6.  Ethnicity and clinical outcomes in COVID-19: A systematic review and meta-analysis.

Authors:  Shirley Sze; Daniel Pan; Clareece R Nevill; Laura J Gray; Christopher A Martin; Joshua Nazareth; Jatinder S Minhas; Pip Divall; Kamlesh Khunti; Keith R Abrams; Laura B Nellums; Manish Pareek
Journal:  EClinicalMedicine       Date:  2020-11-12

7.  Ethnicity and COVID-19: an urgent public health research priority.

Authors:  Manish Pareek; Mansoor N Bangash; Nilesh Pareek; Daniel Pan; Shirley Sze; Jatinder S Minhas; Wasim Hanif; Kamlesh Khunti
Journal:  Lancet       Date:  2020-04-21       Impact factor: 79.321

Review 8.  Do free radical NETwork and oxidative stress disparities in African Americans enhance their vulnerability to SARS-CoV-2 infection and COVID-19 severity?

Authors:  Balaraman Kalyanaraman
Journal:  Redox Biol       Date:  2020-09-15       Impact factor: 11.799

9.  Lockdown impact on COVID-19 epidemics in regions across metropolitan France.

Authors:  Simon Cauchemez; Cécile Tran Kiem; Juliette Paireau; Patrick Rolland; Arnaud Fontanet
Journal:  Lancet       Date:  2020-09-29       Impact factor: 79.321

10.  SARS-CoV-2 antibody prevalence in England following the first peak of the pandemic.

Authors:  Helen Ward; Christina Atchison; Matthew Whitaker; Kylie E C Ainslie; Joshua Elliott; Lucy Okell; Rozlyn Redd; Deborah Ashby; Christl A Donnelly; Wendy Barclay; Ara Darzi; Graham Cooke; Steven Riley; Paul Elliott
Journal:  Nat Commun       Date:  2021-02-10       Impact factor: 14.919

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1.  Infection fatality rate of COVID-19 in community-dwelling elderly populations.

Authors:  Cathrine Axfors; John P A Ioannidis
Journal:  Eur J Epidemiol       Date:  2022-03-20       Impact factor: 12.434

2.  Comparison of a Blood Self-Collection System with Routine Phlebotomy for SARS-CoV-2 Antibody Testing.

Authors:  Douglas Wixted; Coralei E Neighbors; Carl F Pieper; Angie Wu; Carla Kingsbury; Heidi Register; Elizabeth Petzold; L Kristin Newby; Christopher W Woods
Journal:  Diagnostics (Basel)       Date:  2022-07-31
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